Nucleotide Global Alignment

Description

• Query: ccsbBroad304_14564
• Subject: NM_001039139.2
• Aligned Length: 1538
• Identities: 1182
• Gaps: 82

Alignment

Query    1  ATGGCCACCACGGTGACCTGCACCCGCTTCACCGACGAGTACCAGCTCTACGAGGATATTGGCAAGGGGGCTTT  74
            |||||||||||.|..|||||||||||||||||||||||.||||||||.|.||||||..|.||||||||.||.||
Sbjct    1  ATGGCCACCACCGCCACCTGCACCCGCTTCACCGACGACTACCAGCTTTTCGAGGAGCTCGGCAAGGGTGCCTT  74

Query   75  CTCTGTGGTCCGACGCTGTGTCAAG-----CTCTGCACCGGCCATGAGTATGCAGCCAAGATCATCAACACCAA  143
            |||.||||||||..|.|||||.|||     .|||.|     .||.||.|||||.||.||.||||||||.|||||
Sbjct   75  CTCAGTGGTCCGGAGGTGTGTAAAGAAAACATCTAC-----GCAGGAATATGCTGCAAAAATCATCAATACCAA  143

Query  144  GAAGCTGTCAGCCAGAGATCACCAGAAGCTGGAGAGAGAGGCTCGGATCTGCCGCCTTCTGAAGCATTCCAACA  217
            ||||.||||.|||.|||||||.|||||.||.||..|||||||.|||||.|||||.||||||||.|||.|.||||
Sbjct  144  GAAGTTGTCCGCCCGAGATCATCAGAAACTAGAACGAGAGGCCCGGATATGCCGACTTCTGAAACATCCAAACA  217

Query  218  TCGTGCGTCTCCACGACAGCATCTCCGAGGAGGGCTTCCACTACCTGGTCTTCGATCTGGTCACTGGTGGGGAG  291
            |.|||||||||||.|||||.||.||.||.||.||.||.||||||||.||.||.||.||.||.||.||.||||||
Sbjct  218  TTGTGCGTCTCCATGACAGTATTTCTGAAGAAGGGTTTCACTACCTCGTGTTTGACCTTGTTACCGGAGGGGAG  291

Query  292  CTCTTTGAAGACATTGTGGCGAGAGAGTACTACAGCGAGGCTGATGCCAGTCACTGTATCCAGCAGATCCTGGA  365
            .|.|||||||||||||||||.||||||||||||||.||.|||||||||||.||||||||.||.|||||||||||
Sbjct  292  TTGTTTGAAGACATTGTGGCCAGAGAGTACTACAGTGAAGCTGATGCCAGCCACTGTATACATCAGATCCTGGA  365

Query  366  GGCCGTTCTCCATTGTCACCA-AATGGGGGTCGTCCACAGAGACCTCAAGCCGGAGAACCTGCTTCTGGCCAGC  438
            |...|||..|||....||||| .|| |...||||||||.|.||.||.|||||.||||||.||||.|||||.||.
Sbjct  366  GAGTGTTAACCACATCCACCAGCAT-GACATCGTCCACCGGGATCTGAAGCCTGAGAACTTGCTGCTGGCGAGT  438

Query  439  AAGTGCAAAGGGGCTGCAGTGAAGCTGGCAGACTTCGGCCTAGCTATCGAGGTGCAGGGGGACCAGCAGGCATG  512
            ||.|||||.||.|||||.||.|||||.||.||.||.|||||.||.|||||.||.|||||.||.||||||||.||
Sbjct  439  AAATGCAAGGGTGCTGCGGTCAAGCTAGCTGATTTTGGCCTGGCCATCGAAGTACAGGGAGAGCAGCAGGCTTG  512

Query  513  GTTTGGTTTCGCTGGCACACCAGGCTACCTGTCCCCTGAGGTCCTTCGCAAAGAGGCGTATGGCAAGCCTGTGG  586
            |||||||||.||.|||||.|||||.|||.||||||||||||||.|..|.|||||..|.|||||.||.|||||||
Sbjct  513  GTTTGGTTTTGCCGGCACCCCAGGTTACTTGTCCCCTGAGGTCTTGAGGAAAGATCCCTATGGAAAACCTGTGG  586

Query  587  ACATCTGGGCATGTGGGGTGATCCTGTACATCCTGCTCGTGGGCTACCCACCCTTCTGGGACGAGGACCAGCAC  660
            ||||||||||.||.|||||.||||||||.|||||.||.|||||||||||.|||||||||||.|||||.||||||
Sbjct  587  ACATCTGGGCCTGCGGGGTCATCCTGTATATCCTCCTGGTGGGCTACCCTCCCTTCTGGGATGAGGATCAGCAC  660

Query  661  AAGCTGTACCAGCAGATCAAGGCTGGTGCCTATGACTTCCCGTCCCCTGAGTGGGACACCGTCACTCCTGAAGC  734
            ||||||||.|||||||||||.|||||.|||||.||.|||||.||.||.||.||||||||.||||||||||||||
Sbjct  661  AAGCTGTATCAGCAGATCAAAGCTGGAGCCTACGATTTCCCATCACCAGAATGGGACACAGTCACTCCTGAAGC  734

Query  735  CAAAAACCTCATCAACCAGATGCTGACCATCAACCCTGCCAAGCGCATCACAGCCCATGAGGCCCTGAAGCACC  808
            .||.|||.|.||||||||||||||||||||.||||||||.|||||||||||.|||.|..||||.||.|||||||
Sbjct  735  TAAGAACTTGATCAACCAGATGCTGACCATAAACCCTGCAAAGCGCATCACGGCCGACCAGGCTCTCAAGCACC  808

Query  809  CGTGGGTCTGCCAACGCTCCACGGTAGCATCCATGATGCACAGACAGGAGACTGTGGAGTGTCT---GAAAAAG  879
            |.||||||||.|||||.||.|||||.||||||||||||||..|.||.|||||.||.||||| ||   |.|||  
Sbjct  809  CATGGGTCTGTCAACGGTCTACGGTGGCATCCATGATGCATCGCCAAGAGACGGTAGAGTG-CTTACGCAAA--  879

Query  880  TTCAATGCCAGGAGAAAGCTCAAGGGAGCCATCCTCACCACCATGCTGGCCACACGGAATTTCTCAGCAGCCAA  953
            |||||.|||.|||||||.||.|||||.|||||||||||.||||||||.|.|.|..||||.||.|||||.|||||
Sbjct  880  TTCAACGCCCGGAGAAAACTGAAGGGTGCCATCCTCACAACCATGCTTGTCTCCAGGAACTTTTCAGCTGCCAA  953

Query  954  GAGTTTACTCAACAAGAAAGCAGAT---GGAGTCAAGCCCCAGACGAATAGCACCAAAAACAGTG---------  1015
            .||..||.|.||||||||..|||||   ||.||||||     ||     |.|||.||..||.|||         
Sbjct  954  AAGCCTATTGAACAAGAAGTCAGATGGCGGTGTCAAG-----GA-----ACCACAAACCACCGTGGTACATAAT  1017

Query 1016  ----CAGCCGCCACCA---GCCCCAAAGGGACGCTTCCTCCTGCCGCCCTGGAGTCTTCTGACAGTGCCAATAC  1082
                |||..|..|.||   ||.|||.||.|| |||                  ||              ||.||
Sbjct 1018  GCTACAGATGGGATCAAGGGCTCCACAGAGA-GCT------------------GT--------------AACAC  1058

Query 1083  CACCATAGAGGATGAAGACGCT-AAAGCCCGGAAGCAGGAGATCATTAAGACCACGGAGCAGCTCATCGAGGCC  1155
            |||.|.|||.||.||||| .|| ||||...|.||.||.||.||||||||||.|||.||.||.||.|||||.|||
Sbjct 1059  CACTACAGAAGACGAAGA-TCTCAAAGTGAGAAAACAAGAAATCATTAAGATCACAGAACAACTGATCGAAGCC  1131

Query 1156  GTCAACAACGGTGACTTTGAGGCCTACGCGAAAATCTGTGACCCAGGGCTGACCTCGTTTGAGCCTGAAGCACT  1229
            .|||||||.||.|||||||||||||||.||||.||.||||||||.||.||.||.||.||||||||.|||||.||
Sbjct 1132  ATCAACAATGGGGACTTTGAGGCCTACACGAAGATTTGTGACCCGGGCCTCACATCCTTTGAGCCAGAAGCCCT  1205

Query 1230  GGGCAACCTGGTTGAAGGGATGGACTTCCACAGATTCTACTTCGAGAACCTGCTGGCCAAGAACAGCAAGCCGA  1303
            .||.|||||.||.|||||.|||||.|||||.|..||.|||||.|||||.||.|||.||||||||||||||||.|
Sbjct 1206  TGGTAACCTCGTGGAAGGAATGGATTTCCATAAGTTTTACTTTGAGAATCTCCTGTCCAAGAACAGCAAGCCTA  1279

Query 1304  TCCACACGACCATCCTGAACCCACACGTGCACGTCATTGGAGAGGATGCCGCCTGCATCGCTTACATCCGGCTC  1377
            |||||||.||||||||.|||||.|||||.|||||.|||||.|||||.||.||.||||||||.||.|||||||||
Sbjct 1280  TCCACACCACCATCCTAAACCCTCACGTCCACGTGATTGGGGAGGACGCAGCTTGCATCGCCTATATCCGGCTC  1353

Query 1378  ACGCAGTACATTGACGGGCAGGGCCGGCCCCGCACCAGCCAGTCTGAGGAGACCCGCGTGTGGCACCGCCGCGA  1451
            ||.||||||||.|||||||||||.|||||.||||||||.|||||.|||||||||||.||||||||||||||.||
Sbjct 1354  ACTCAGTACATCGACGGGCAGGGTCGGCCTCGCACCAGTCAGTCAGAGGAGACCCGGGTGTGGCACCGCCGGGA  1427

Query 1452  CGGCAAGTGGCAGAACGTGCACTTCCACTGCTCGGGCGCGCCTGTGGCCCCGCTGCAG  1509
            .||||||||||..||.||.||||..||||||||.||.||.||||..||.|||||.|||
Sbjct 1428  TGGCAAGTGGCTCAATGTCCACTATCACTGCTCAGGGGCCCCTGCCGCACCGCTACAG  1485