Nucleotide Global Alignment

Description

• Query: ccsbBroad304_14564
• Subject: NM_001367536.1
• Aligned Length: 1624
• Identities: 1226
• Gaps: 134

Alignment

Query    1  ATGGCCACCACGGTGACCTGCACCCGCTTCACCGACGAGTACCAGCTCTACGAGGATATTGGCAAGGGGGCTTT  74
            |||||||||||.|..|||||||||||.|||||||||||.||||||||||.||||||..||||||||||.|||||
Sbjct    1  ATGGCCACCACCGCCACCTGCACCCGTTTCACCGACGACTACCAGCTCTTCGAGGAGCTTGGCAAGGGTGCTTT  74

Query   75  CTCTGTGGTCCGACGCTGTGTCAAG-----CTCTGCACCGGCCATGAGTATGCAGCCAAGATCATCAACACCAA  143
            ||||||||||||..|.|||||.|||     |||  |||   .||.|||||.|||||.||.||||||||.|||||
Sbjct   75  CTCTGTGGTCCGCAGGTGTGTGAAGAAAACCTC--CAC---GCAGGAGTACGCAGCAAAAATCATCAATACCAA  143

Query  144  GAAGCTGTCAGCCAGAGATCACCAGAAGCTGGAGAGAGAGGCTCGGATCTGCCGCCTTCTGAAGCATTCCAACA  217
            ||||.||||.|||.|.|||||||||||.||.||..|.|||||||||||.||.||.||||||||.|||.|.||||
Sbjct  144  GAAGTTGTCTGCCCGGGATCACCAGAAACTAGAACGTGAGGCTCGGATATGTCGACTTCTGAAACATCCAAACA  217

Query  218  TCGTGCGTCTCCACGACAGCATCTCCGAGGAGGGCTTCCACTACCTGGTCTTCGATCTGGTCACTGGTGGGGAG  291
            |||||||.|||||.|||||.||.||.||.||.||.||.||||||||.||.||.||.||.||.||.||.||||||
Sbjct  218  TCGTGCGCCTCCATGACAGTATTTCTGAAGAAGGGTTTCACTACCTCGTGTTTGACCTTGTTACCGGCGGGGAG  291

Query  292  CTCTTTGAAGACATTGTGGCGAGAGAGTACTACAGCGAGGCTGATGCCAGTCACTGTATCCAGCAGATCCTGGA  365
            ||.|||||||||||||||||.||||||||||||||.||.||.||||||||.||||||||.||.|||||.|||||
Sbjct  292  CTGTTTGAAGACATTGTGGCCAGAGAGTACTACAGTGAAGCAGATGCCAGCCACTGTATACATCAGATTCTGGA  365

Query  366  GGCCGTTCTCCATTGTCACCA-AATGGGGGTCGTCCACAGAGACCTCAAGCCGGAGAACCTGCTTCTGGCCAGC  438
            |...|||..|||....||||| .|| |...||||||||||.|||||.|||||.|||||||||||.|||||.||.
Sbjct  366  GAGTGTTAACCACATCCACCAGCAT-GACATCGTCCACAGGGACCTGAAGCCTGAGAACCTGCTGCTGGCGAGT  438

Query  439  AAGTGCAAAGGGGCTGCAGTGAAGCTGGCAGACTTCGGCCTAGCTATCGAGGTGCAGGGGGACCAGCAGGCATG  512
            ||.|||||.||.||.||.||.||||||||.||.||.||||||||.|||||.||.|||||.||.||||||||.||
Sbjct  439  AAATGCAAGGGTGCCGCCGTCAAGCTGGCTGATTTTGGCCTAGCCATCGAAGTACAGGGAGAGCAGCAGGCTTG  512

Query  513  GTTTGGTTTCGCTGGCACACCAGGCTACCTGTCCCCTGAGGTCCTTCGCAAAGAGGCGTATGGCAAGCCTGTGG  586
            |||||||||.||||||||.|||||.|||.||||||||||||||.|..|.|||||..|.|||||.||.|||||||
Sbjct  513  GTTTGGTTTTGCTGGCACCCCAGGTTACTTGTCCCCTGAGGTCTTGAGGAAAGATCCCTATGGAAAACCTGTGG  586

Query  587  ACATCTGGGCATGTGGGGTGATCCTGTACATCCTGCTCGTGGGCTACCCACCCTTCTGGGACGAGGACCAGCAC  660
            |.||||||||.||.|||||.||||||||.|||||.||.||||||||.||.|||||||||||.|||||.||||||
Sbjct  587  ATATCTGGGCCTGCGGGGTCATCCTGTATATCCTCCTGGTGGGCTATCCTCCCTTCTGGGATGAGGATCAGCAC  660

Query  661  AAGCTGTACCAGCAGATCAAGGCTGGTGCCTATGACTTCCCGTCCCCTGAGTGGGACACCGTCACTCCTGAAGC  734
            ||||||||.|||||||||||||||||.||||||||.|||||.||.||.||.||||||||.||.|||||||||||
Sbjct  661  AAGCTGTATCAGCAGATCAAGGCTGGAGCCTATGATTTCCCATCACCAGAATGGGACACGGTAACTCCTGAAGC  734

Query  735  CAAAAACCTCATCAACCAGATGCTGACCATCAACCCTGCCAAGCGCATCACAGCCCATGAGGCCCTGAAGCACC  808
            |||.|||.|.||||||||||||||||||||.|||||.||.|||||||||||.||..|..||||.||.|||||||
Sbjct  735  CAAGAACTTGATCAACCAGATGCTGACCATAAACCCAGCAAAGCGCATCACGGCTGACCAGGCTCTCAAGCACC  808

Query  809  CGTGGGTCTGCCAACGCTCCACGGTAGCATCCATGATGCACAGACAGGAGACTGTGGAGTGTCTGAAAAAGTTC  882
            ||||||||||.|||||.||||||||.||||||||||||||..|.||||||||||||||||||.||...||||||
Sbjct  809  CGTGGGTCTGTCAACGATCCACGGTGGCATCCATGATGCATCGTCAGGAGACTGTGGAGTGTTTGCGCAAGTTC  882

Query  883  AATGCCAGGAGAAAGCTCAAGGGAGCCATCCTCACCACCATGCTGGCCACACGGAATTTCTC------------  944
            ||||||.|||||||.||.|||||.|||||||||||.||||||||.|.|.|..||||.|||||            
Sbjct  883  AATGCCCGGAGAAAACTGAAGGGTGCCATCCTCACGACCATGCTTGTCTCCAGGAACTTCTCAGTTGGCAGGCA  956

Query  945  ---------------------------------------------------AGCAGCCAAGAGTTTACTCAACA  967
                                                               |||.|||||.||..||.|.||||
Sbjct  957  GAGCTCCGCCCCCGCCTCGCCTGCCGCGAGCGCCGCCGGCCTGGCCGGGCAAGCTGCCAAAAGCCTATTGAACA  1030

Query  968  AGAAAGCAGATGG-----------------AGTCAAGCCCCAGACG-------AAT----------AGCACCAA  1007
            ||||..|.|||||                 ||||.||..|||| ||       |||          |.||.|||
Sbjct 1031  AGAAGTCGGATGGCGGTGTCAAGAAAAGGAAGTCGAGTTCCAG-CGTGCACCTAATGCCACAGAGCAACAACAA  1103

Query 1008  AAACAGTGC-----AGCCGCCACCAGCCCCAAAG-GGACGCTTCCTCCTG----CCGCCCTGGAGTCTTCTGAC  1071
            ||||||| |     |||     |||||||  ||| |..|||..|||  ||    |.|||.|||..||..|.||.
Sbjct 1104  AAACAGT-CTCGTAAGC-----CCAGCCC--AAGAGCCCGCGCCCT--TGCAGACGGCCATGGGCTCCACAGAG  1167

Query 1072  AG-TGCCAATACCACCATAGAGGATGAAGACGCT-AAAGCCCGGAAGCAGGAGATCATTAAGACCACGGAGCAG  1143
            || || |||.|||||||.|||.|||||.||| || ||||..||.||.||||||||||||||||..||.||.|||
Sbjct 1168  AGCTG-CAACACCACCACAGAAGATGAGGAC-CTCAAAGTGCGAAAACAGGAGATCATTAAGATTACAGAACAG  1239

Query 1144  CTCATCGAGGCCGTCAACAACGGTGACTTTGAGGCCTACGCGAAAATCTGTGACCCAGGGCTGACCTCGTTTGA  1217
            ||.||.||.|||.|||||||.||.|||||||||||||||.||||.||.|||||.|||||.||.||.||.|||||
Sbjct 1240  CTGATTGAAGCCATCAACAATGGGGACTTTGAGGCCTACACGAAGATTTGTGATCCAGGCCTCACTTCCTTTGA  1313

Query 1218  GCCTGAAGCACTGGGCAACCTGGTTGAAGGGATGGACTTCCACAGATTCTACTTCGAGAACCTGCTGGCCAAGA  1291
            ||||||.||.||.||.|||||.||.||.||||||||.|||||.|..||.|||||.|||||.||.|||.||||||
Sbjct 1314  GCCTGAGGCCCTTGGTAACCTCGTGGAGGGGATGGATTTCCATAAGTTTTACTTTGAGAATCTCCTGTCCAAGA  1387

Query 1292  ACAGCAAGCCGATCCACACGACCATCCTGAACCCACACGTGCACGTCATTGGAGAGGATGCCGCCTGCATCGCT  1365
            ||||||||||.|||||.||.||||||||.|||||||||||.|||||.|||||.|||||.||.||.||||||||.
Sbjct 1388  ACAGCAAGCCTATCCATACCACCATCCTAAACCCACACGTCCACGTGATTGGGGAGGACGCAGCGTGCATCGCC  1461

Query 1366  TACATCCGGCTCACGCAGTACATTGACGGGCAGGGCCGGCCCCGCACCAGCCAGTCTGAGGAGACCCGCGTGTG  1439
            ||||||||.|||||.||||||||.|||||||||||.|||||.||||||||||||||.||.||||||||.||.||
Sbjct 1462  TACATCCGCCTCACCCAGTACATCGACGGGCAGGGTCGGCCTCGCACCAGCCAGTCAGAAGAGACCCGGGTCTG  1535

Query 1440  GCACCGCCGCGACGGCAAGTGGCAGAACGTGCACTTCCACTGCTCGGGCGCGCCTGTGGCCCCGCTGCAG  1509
            ||||||.||.||.||||||||||..||.||.||||..||||||||.||.||.||||..||.|||||||||
Sbjct 1536  GCACCGTCGGGATGGCAAGTGGCTCAATGTCCACTATCACTGCTCAGGGGCCCCTGCCGCACCGCTGCAG  1605