Nucleotide Global Alignment

Description

• Query: ccsbBroad304_14564
• Subject: NM_171825.2
• Aligned Length: 1524
• Identities: 1162
• Gaps: 105

Alignment

Query    1  ATGGCCACCACGGTGACCTGCACCCGCTTCACCGACGAGTACCAGCTCTACGAGGATATT-GGCAAGGGGGCTT  73
            ||||||||||   |.|||||||||||||||||.||.|||||||||||||.|||||| ||| ||||||||.||.|
Sbjct    1  ATGGCCACCA---TCACCTGCACCCGCTTCACGGAAGAGTACCAGCTCTTCGAGGA-ATTGGGCAAGGGAGCCT  70

Query   74  TCTCTGTGGTCCGACGCTGTGTCAAGCT-CTGCACCGGCCATGAGTATGCAGCCAAGATCATCAACACCAAGAA  146
            ||||.|||||.|||.|.|||||.|||.| ||| .|.|||||.||||||||.|||||||||||||||||.|||||
Sbjct   71  TCTCGGTGGTGCGAAGGTGTGTGAAGGTGCTG-GCTGGCCAGGAGTATGCTGCCAAGATCATCAACACAAAGAA  143

Query  147  GCTGTCAGCCAGAGATCACCAGAAGCTGGAGAGAGAGGCTCGGATCTGCCGCCTTCTGAAGCATTCCAACATCG  220
            |||||||||||||||.||.||||||||||||.|.||.||.||.|||||||||||.||||||||..|||||||||
Sbjct  144  GCTGTCAGCCAGAGACCATCAGAAGCTGGAGCGTGAAGCCCGCATCTGCCGCCTGCTGAAGCACCCCAACATCG  217

Query  221  TGCGTCTCCACGACAGCATCTCCGAGGAGGGCTTCCACTACCTGGTCTTCGATCTGGTCACTGGTGGGGAGCTC  294
            |.||.||.||.|||||||||||.||||||||...||||||||||.|||||||.|||||||||||||||||.||.
Sbjct  218  TCCGACTACATGACAGCATCTCAGAGGAGGGACACCACTACCTGATCTTCGACCTGGTCACTGGTGGGGAACTG  291

Query  295  TTTGAAGACATTGTGGCGAGAGAGTACTACAGCGAGGCTGATGCCAGTCACTGTATCCAGCAGATCCTGGAGGC  368
            ||||||||.||.|||||..|.|||||.|||||.|||||.|||||||||||||||||||||||||||||||||||
Sbjct  292  TTTGAAGATATCGTGGCCCGGGAGTATTACAGTGAGGCGGATGCCAGTCACTGTATCCAGCAGATCCTGGAGGC  365

Query  369  CGTTCTCCATTGTCACCAAATGGGGGTCGTCCACAGAGACCTCAAGCCGGAGAACCTGCTTCTGGCCAGCAAGT  442
            .||.||.||.||.|||||.||||||||.||.|||.|.|||||.|||||.|||||.|||.|.||||||..||||.
Sbjct  366  TGTGCTGCACTGCCACCAGATGGGGGTGGTGCACCGGGACCTGAAGCCTGAGAATCTGTTGCTGGCCTCCAAGC  439

Query  443  GCAAAGGGGCTGCAGTGAAGCTGGCAGACTTCGGCCTAGCTATCGAGGTGCAGGGGGACCAGCAGGCATGGTTT  516
            .|||.||.||.||||||||||||||||||||.|||||.||.||.||||||.|||||||.|||||||||||||||
Sbjct  440  TCAAGGGTGCCGCAGTGAAGCTGGCAGACTTTGGCCTGGCCATAGAGGTGGAGGGGGAGCAGCAGGCATGGTTT  513

Query  517  GGTTTCGCTGGCACACCAGGCTACCTGTCCCCTGAGGTCCTTCGCAAAGAGGCGTATGGCAAGCCTGTGGACAT  590
            ||.||.||.||.||.||.||.||.||.|||||.||.||.||.||.||.||..||||.||.||||||||||||.|
Sbjct  514  GGGTTTGCAGGGACTCCTGGATATCTCTCCCCAGAAGTGCTGCGGAAGGACCCGTACGGGAAGCCTGTGGACCT  587

Query  591  CTGGGCATGTGGGGTGATCCTGTACATCCTGCTCGTGGGCTACCCACCCTTCTGGGACGAGGACCAGCACAAGC  664
            .|||||.||||||||.|||||||||||||||||.||.||.|||||.||.||||||||.||||||||||||...|
Sbjct  588  GTGGGCTTGTGGGGTCATCCTGTACATCCTGCTGGTTGGGTACCCCCCGTTCTGGGATGAGGACCAGCACCGCC  661

Query  665  TGTACCAGCAGATCAAGGCTGGTGCCTATGACTTCCCGTCCCCTGAGTGGGACACCGTCACTCCTGAAGCCAAA  738
            ||||||||||||||||.||.||.||||||||.|||||.||.||.||.||||||||.|||||.||.||||||||.
Sbjct  662  TGTACCAGCAGATCAAAGCCGGCGCCTATGATTTCCCATCGCCGGAATGGGACACTGTCACCCCGGAAGCCAAG  735

Query  739  AACCTCATCAACCAGATGCTGACCATCAACCCTGCCAAGCGCATCACAGC--CCATGAGGCCCTGAAGCACCCG  810
            .|.||.|||||..|||||||||||||.|||||..||||.|||||||||||  ||  ||.|||||.||||||||.
Sbjct  736  GATCTGATCAATAAGATGCTGACCATTAACCCATCCAAACGCATCACAGCTGCC--GAAGCCCTTAAGCACCCC  807

Query  811  TGGGTCTGCCAACGCTCCACGGTAGCATCCATG-ATGCACAGACAGGAGACTGTGGAGTGTCTGAAAAAGTTCA  883
            |||.|||..||.||||||||.||.|||||| || |||||||||||||||||.|||||.||.|||||.|||||||
Sbjct  808  TGGATCTCGCACCGCTCCACCGTGGCATCC-TGCATGCACAGACAGGAGACCGTGGACTGCCTGAAGAAGTTCA  880

Query  884  ATGCCAGGAGAAAGCTCAAGGGAGCCATCCTCACCACCATGCTGGCCACACGGAATTTCTCAGCAGCCAAGAGT  957
            ||||||||||.||.||.|||||||||||.||||||||.|||||||||||..||||.|||||.|.||..||||||
Sbjct  881  ATGCCAGGAGGAAACTGAAGGGAGCCATTCTCACCACGATGCTGGCCACCAGGAACTTCTCCGGAGGGAAGAGT  954

Query  958  TTACTCAACAAGAA-AGCAGATGGAGTCAAGCCCCAGACGAATAGCACCAAAAACAGTGCAGCCGCCACCAGCC  1030
            ......|||||||| ||| |||||.||.||                                            
Sbjct  955  GGGGGAAACAAGAAGAGC-GATGGTGTGAA--------------------------------------------  983

Query 1031  CCAAAGGGACGCTTCCTCCTGCCGCCCTGGAGTCTTCTGACAGTGCCAATACCACCATAGAGGATGAAGACGCT  1104
                                        |||.||.||.||.||..||||.||||||||.||||||||||||.|.
Sbjct  984  ----------------------------GGAATCCTCAGAGAGCACCAACACCACCATCGAGGATGAAGACACC  1029

Query 1105  AAAGCCCGGAAGCAGGAGATCATTAAGACCACGGAGCAGCTCATCGAGGCCGTCAACAACGGTGACTTTGAGGC  1178
            ||||..|||||.|||||.||.||.||....||.||||||||.||.||.|||.|.|.|||.||.||.||||||.|
Sbjct 1030  AAAGTGCGGAAACAGGAAATTATAAAAGTGACAGAGCAGCTGATTGAAGCCATAAGCAATGGAGATTTTGAGTC  1103

Query 1179  CTACGCGAAAATCTGTGACCCAGGGCTGACCTCGTTTGAGCCTGAAGCACTGGGCAACCTGGTTGAAGGGATGG  1252
            ||||.||||.||.||.|||||.||..||||..|.||.||.|||||.||.|||||.|||||||||||.||..|||
Sbjct 1104  CTACACGAAGATGTGCGACCCTGGCATGACAGCCTTCGAACCTGAGGCCCTGGGGAACCTGGTTGAGGGCCTGG  1177

Query 1253  ACTTCCACAGATTCTACTTCGAGAACCTGCTGG-CCAAGAACAGCAAGCCGATCCACACGACCATCCTGAACCC  1325
            |||||||..|||||||.||.||.|||||| ||| ||..||||||||||||..|.|||||.|||||||||||.||
Sbjct 1178  ACTTCCATCGATTCTATTTTGAAAACCTG-TGGTCCCGGAACAGCAAGCCCGTGCACACCACCATCCTGAATCC  1250

Query 1326  ACACGTGCACGTCATTGGAGAGGATGCCGCCTGCATCGCTTACATCCGGCTCACGCAGTACATTGACG--GGCA  1397
            .|||.|.|||.|.||.||.||.||..|.|||||||||||.||||||||..|||||||||||.|.||||  ||| 
Sbjct 1251  CCACATCCACCTGATGGGCGACGAGTCAGCCTGCATCGCCTACATCCGCATCACGCAGTACCTGGACGCTGGC-  1323

Query 1398  GGGCCGGCCCCGCACCAGCCAGTCTGAGGAGACCCGCGTGTGGCACCGCCGCGACGGCAAGTGGCAGAACGTGC  1471
             |||...||.||||||..||||||.|||||||||||.||.|||||||||||.||.|||||.|||||||.|||.|
Sbjct 1324  -GGCATCCCACGCACCGCCCAGTCGGAGGAGACCCGTGTCTGGCACCGCCGGGATGGCAAATGGCAGATCGTCC  1396

Query 1472  ACTTCCACTG--CTCGGGCGCGCCTGTG----GCCCCGCTGCAG  1509
            ||||||||.|  ||.|||||| |||..|    |||||.|     
Sbjct 1397  ACTTCCACAGATCTGGGGCGC-CCTCCGTCCTGCCCCAC-----  1434