Nucleotide Global Alignment

Description

Query:
ccsbBroad304_14615
Subject:
NM_001366222.1
Aligned Length:
2767
Identities:
2305
Gaps:
390

Alignment

Query    1  ATG-----CCGGTCCGGAAGCAAGATAC---------CCAGAGAGCATTGCACCTTTTGGAGGAATATCGTTCA  60
            |||     |...|.|||||.|||.|.||         |..|.| |||.|..|      |||||         ||
Sbjct    1  ATGAATTACATTTTCGGAAACAACACACTTCTATACTCTCGCG-GCAGTCGA------GGAGG---------CA  58

Query   61  AAACTA-----AGCCAAACTGAAGACAGACAGCTCAGAAGTTCCATAGAACGGGTTATTAACATATTTCAGAGC  129
            |.||||     |||||   ||          ||||||.||..|||.||                    ||||  
Sbjct   59  ATACTAGCTCTAGCCA---TG----------GCTCAGCAGGCCCAAAG--------------------CAGA--  97

Query  130  AACCTCTTTCAGGCTTTAATAGATATTCAAGAATTTTATGAAGTGACCTTACTGGATAATCCAAAATGTATAGA  203
            |||                                               |||||..||   ||||.|    |.
Sbjct   98  AAC-----------------------------------------------ACTGGGCAA---AAAAGG----GC  117

Query  204  TCGTTCAAAGCCGTCTGAACCAATTCAACCTGTGAATACTTGGGAGATTTCCAG--CCTTCCAAGCTCTACTGT  275
            ||| |||.|      |||||   |.|||.|||.|                ||||  |||||        ||..|
Sbjct  118  TCG-TCAGA------TGAAC---TGCAAGCTGAG----------------CCAGAACCTTC--------ACGCT  157

Query  276  GACTTCAGAGA-----------CACTGCCAAG---CAGCCTTAGCCCTAGTGTAGAGAAATACA----GGTATC  331
            |.|..||||.|           |||| |.|||   ||||.|||    |.|        |.|.||    ||||.|
Sbjct  158  GGCAGCAGATAGTTGCATTTTTCACT-CGAAGACACAGCTTTA----TTG--------ACTGCATCTCGGTAGC  218

Query  332  AGGATGAAGATACACCTCCTCAAGAGCATATTTCCCCA--CAAATCACAAATGAAGTGATAGGTCCAGAATTGG  403
                        ||||..|||.|           ||||  |||                      |||||...|
Sbjct  219  ------------CACCAGCTCCA-----------CCCAGCCAA----------------------CAGAAGCTG  247

Query  404  TTCAT--GTCTCAGAGAAGAACT-------TATCAGAGAT--------TGAGAATGTCCATG----GATT--TG  454
            |||.|  .||||         ||       |..|.|.|||        ||..|  ||||.||    ||.|  ||
Sbjct  248  TTCTTCCCTCTC---------CTCCCACTGTCCCTGTGATCCCTGTCCTGCCA--GTCCCTGCTGAGAATACTG  310

Query  455  TTTCTCATTCT------CATATTTCACCAATAAAGGCAAATCCTCCCCCAGTACTGGTCAACACAGATAGCTTG  522
                ||||.||      |||     |||   |.|||||||||||||||||||||||||||||||||||||||||
Sbjct  311  ----TCATCCTACCCACCAT-----ACC---ACAGGCAAATCCTCCCCCAGTACTGGTCAACACAGATAGCTTG  372

Query  523  AAAACACCAACTTACGTTAATGGCACAGATGCAGATTATGAATATGAAGAAATCACACTTGAAAGGGGAAATTC  596
            .|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  373  GAAACACCAACTTACGTTAATGGCACAGATGCAGATTATGAATATGAAGAAATCACACTTGAAAGGGGAAATTC  446

Query  597  AGGGCTTGGTTTCAGCATTGCAG--AGTACGGACAACCCACACATTGGAGATGACTCAAGTATTTTCATTACCA  668
            |||||||||||||||||||||||  .||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  447  AGGGCTTGGTTTCAGCATTGCAGGAGGTACGGACAACCCACACATTGGAGATGACTCAAGTATTTTCATTACCA  520

Query  669  AAATTATCACA-GGGGAGCAGCCGCCCAAGATGGGAAGATTGCGGGTCAATGACTGTATATTACAAGTAAATGA  741
            ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||.|||||||||
Sbjct  521  AAATTATCACAGGGGGAGCAGCCGCCCAAGAT-GGAAGATTGCGGGTCAATGACTGTATATTACGAGTAAATGA  593

Query  742  AGTAGATGTTCGTGATGTAACACATAGCAAAGCAGTTGAAGCGTTGAAAGAAGCAGGGTCTATTGTACGCTTGT  815
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  594  AGTAGATGTTCGTGATGTAACACATAGCAAAGCAGTTGAAGCGTTGAAAGAAGCAGGGTCTATTGTACGCTTGT  667

Query  816  ATGTAAAAAGAAGGAAACCAGTGTCAGAAAAAATAATGGAAATAAAGCTCATTAAAGGTCCTAAAGGTCTTGGG  889
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  668  ATGTAAAAAGAAGGAAACCAGTGTCAGAAAAAATAATGGAAATAAAGCTCATTAAAGGTCCTAAAGGTCTTGGG  741

Query  890  TTTAGCATTGCTGGAGGTGTTGGAAATCAGCATATTCCTGGGGATAATAGCATCTATGTAACCAAAATAATTGA  963
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  742  TTTAGCATTGCTGGAGGTGTTGGAAATCAGCATATTCCTGGGGATAATAGCATCTATGTAACCAAAATAATTGA  815

Query  964  AGGAGGTGCAGCACATAAGGATGGCAAACTTCAGATTGGAGATAAACTTTTAGCAGTGAATAACGTATGTTTAG  1037
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  816  AGGAGGTGCAGCACATAAGGATGGCAAACTTCAGATTGGAGATAAACTTTTAGCAGTGAATAACGTATGTTTAG  889

Query 1038  AAGAAGTTACTCATGAAGAAGCAGTAACTGCCTTAAAGAACACATCTGATTTTGTTTATTTGAAAGTGGCAAAA  1111
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  890  AAGAAGTTACTCATGAAGAAGCAGTAACTGCCTTAAAGAACACATCTGATTTTGTTTATTTGAAAGTGGCAAAA  963

Query 1112  CCCACAAGTATGTATATGAATGATGGCTATGCACCACCTGATATCACCAACTCTTCTTCTCAGCCTGTTGATAA  1185
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  964  CCCACAAGTATGTATATGAATGATGGCTATGCACCACCTGATATCACCAACTCTTCTTCTCAGCCTGTTGATAA  1037

Query 1186  CCATGTTAGCCCATCTTCCTTCTTGGGCCAGACACCAGCATCTCCAGCCAGATACTCCCCAGTTTCTAAAGCAG  1259
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1038  CCATGTTAGCCCATCTTCCTTCTTGGGCCAGACACCAGCATCTCCAGCCAGATACTCCCCAGTTTCTAAAGCAG  1111

Query 1260  TACTTGGAGATGATGAAATTACAAGGGAACCTAGAAAAGTTGTTCTTCATCGTGGCTCAACGGGCCTTGGTTTC  1333
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1112  TACTTGGAGATGATGAAATTACAAGGGAACCTAGAAAAGTTGTTCTTCATCGTGGCTCAACGGGCCTTGGTTTC  1185

Query 1334  AACATTGTAGGAGGAGAAGATGGAGAAGGAATATTTATTTCCTTTATCTTAGCCGGAGGACCTGCTGATCTAAG  1407
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1186  AACATTGTAGGAGGAGAAGATGGAGAAGGAATATTTATTTCCTTTATCTTAGCCGGAGGACCTGCTGATCTAAG  1259

Query 1408  TGGAGAGCTCAGAAAAGGAGATCGTATTATATCGGTAAACAGTGTTGACCTCAGAGCTGCTAGTCATGAGCAGG  1481
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260  TGGAGAGCTCAGAAAAGGAGATCGTATTATATCGGTAAACAGTGTTGACCTCAGAGCTGCTAGTCATGAGCAGG  1333

Query 1482  CAGCAGCTGCATTGAAAAATGCTGGCCAGGCTGTCACAATTGTTGCACAATATCGACCTGAAGAATACAGTCGT  1555
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1334  CAGCAGCTGCATTGAAAAATGCTGGCCAGGCTGTCACAATTGTTGCACAATATCGACCTGAAGAATACAGTCGT  1407

Query 1556  TTTGAAGCTAAAATACATGATTTACGGGAGCAGATGATGAATAGTAGTATTAGTTCAGGGTCAGGTTCTCTTCG  1629
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1408  TTTGAAGCTAAAATACATGATTTACGGGAGCAGATGATGAATAGTAGTATTAGTTCAGGGTCAGGTTCTCTTCG  1481

Query 1630  AACTAGCCAGAAGCGATCCCTCTATGTCAGAGCCCTTTTTGATTATGACAAGACTAAAGACAGTGGGCTTCCCA  1703
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1482  AACTAGCCAGAAGCGATCCCTCTATGTCAGAGCCCTTTTTGATTATGACAAGACTAAAGACAGTGGGCTTCCCA  1555

Query 1704  GTCAGGGACTGAACTTCAAATTTGGAGATATCCTCCATGTTATTAATGCTTCTGATGATGAATGGTGGCAAGCC  1777
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1556  GTCAGGGACTGAACTTCAAATTTGGAGATATCCTCCATGTTATTAATGCTTCTGATGATGAATGGTGGCAAGCC  1629

Query 1778  AGGCAGGTTACACCAGATGGTGAGAGCGATGAGGTCGGAGTGATTCCCAGTAAACGCAGAGTTGAGAAGAAAGA  1851
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1630  AGGCAGGTTACACCAGATGGTGAGAGCGATGAGGTCGGAGTGATTCCCAGTAAACGCAGAGTTGAGAAGAAAGA  1703

Query 1852  ACGAGCCCGATTAAAAACAGTGAAATTCAATTCTAAAACGAGAGATAAAGGGCAGTCATTC--AATGACAAGCG  1923
            ||||||||||||||||||||||||||||||||||||||||||||||||||||.||  ||.|  .|.||||.|.|
Sbjct 1704  ACGAGCCCGATTAAAAACAGTGAAATTCAATTCTAAAACGAGAGATAAAGGGGAG--ATCCCTGACGACATGGG  1775

Query 1924  -TAAAAAGAACCTCTTTTCCCGAA------AATTCCCCTTCTACAAGAACAAGGACCAG----AGTGAGCAGGA  1986
             |.|||||         .||.|||      ||     |||||| |.|        ||||    |||||      
Sbjct 1776  ATCAAAAG---------GCCTGAAGCATGTAA-----CTTCTA-ATG--------CCAGCGATAGTGA------  1820

Query 1987  AACAAGTGATGCTCACAAGTATGTATATGAATGATGGCTATGCACCACCTGATATCACCAACTGTGGTCAAGAA  2060
                            |||||..|                                    ||.|||||||||||
Sbjct 1821  ----------------AAGTAGTT------------------------------------ACCGTGGTCAAGAA  1842

Query 2061  GAATACGTCTTATCTTATGAACCAGTGAATCAACAAGAAGTTAATTATACTCGACCAGTGATCATATTGGGACC  2134
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1843  GAATACGTCTTATCTTATGAACCAGTGAATCAACAAGAAGTTAATTATACTCGACCAGTGATCATATTGGGACC  1916

Query 2135  TATGAAAGACAGGATAAATGATGACTTGATCTCAGAATTTCCTGACAAATTTGGATCCTGTGTTCCTCATACAA  2208
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1917  TATGAAAGACAGGATAAATGATGACTTGATCTCAGAATTTCCTGACAAATTTGGATCCTGTGTTCCTCATACAA  1990

Query 2209  CTAGACCAAAACGAGATTATGAGGTAGATGGAAGAGATTATCATTTTGTGACTTCAAGAGAGCAGATGGAAAAA  2282
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1991  CTAGACCAAAACGAGATTATGAGGTAGATGGAAGAGATTATCATTTTGTGACTTCAAGAGAGCAGATGGAAAAA  2064

Query 2283  GATATCCAGGAACATAAATTCATTGAAGCTGGCCAGTATAACAATCATCTATATGGAACAAGTGTTCAGTCTGT  2356
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2065  GATATCCAGGAACATAAATTCATTGAAGCTGGCCAGTATAACAATCATCTATATGGAACAAGTGTTCAGTCTGT  2138

Query 2357  ACGAGAAGTAGCAGAAAAGGGCAAACACTGTATCCTTGATGTGTCTGGAAATGCCATAAAGAGATTACAGATTG  2430
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2139  ACGAGAAGTAGCAGAAAAGGGCAAACACTGTATCCTTGATGTGTCTGGAAATGCCATAAAGAGATTACAGATTG  2212

Query 2431  CACAGCTTTACCCTATCTCCATTTTTATTAAACCCAAATCCATGGAAAATATCATGGAAATGAATAAGCGTCTA  2504
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2213  CACAGCTTTACCCTATCTCCATTTTTATTAAACCCAAATCCATGGAAAATATCATGGAAATGAATAAGCGTCTA  2286

Query 2505  ACAGAAGAACAAGCCAGAAAAACATTTGAGAGAGCCATGAAACTGGAACAGGAGTTTACTGAACATTTCACAGC  2578
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2287  ACAGAAGAACAAGCCAGAAAAACATTTGAGAGAGCCATGAAACTGGAACAGGAGTTTACTGAACATTTCACAGC  2360

Query 2579  TATTGTACAGGGGGATACGCTGGAAGACATTTACAACCAAGTGAAACAGATCATAGAAGAACAATCTGGTTCTT  2652
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2361  TATTGTACAGGGGGATACGCTGGAAGACATTTACAACCAAGTGAAACAGATCATAGAAGAACAATCTGGTTCTT  2434

Query 2653  ACATCTGGGTTCCGGCAAAAGAAAAGCTA  2681
            |||||||||||||||||||||||||||||
Sbjct 2435  ACATCTGGGTTCCGGCAAAAGAAAAGCTA  2463

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