Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_14615
- Subject:
- NR_045516.1
- Aligned Length:
- 4702
- Identities:
- 2293
- Gaps:
- 2151
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GCGAGGTTCCGGGGGTGGGGCGGCCCGGAGGCGAGCGGACGAGCAGGGGCCGCGGGCCGCGGCGAGCGGGCGAG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CGGCGGCGGCCGAGGCGGAGAGAGCGGCGCGGGGGTGCGGCCGCCGAAGGGGGAGCTCCTCCCCCGTCCCCTCA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CCCCCTCAGCTGAGCTCGGGGCGGGGCGGGGTACGTGGAGCGGGGCCGGGCGGGGAAGCTGCTCCGAGTCCGGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CGGAGCGCACCCGGGGCGCCCGCGTACGCCGCTCGCGGGAACTTTGCGGCGGAGCCGCAGGTGTGGAGGCCGCG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GAGGGGGGTGCATGAGCGGCGCGGAGAGCGGCGGCTGTCCGGTCCGGCCCCTGCTGGAGTCGCCGCCGGGAGGA 370
Query 1 ------------------------------------------------ATGCCGGTCCGGAAGCAAGATACCCA 26
||||||||||||||||||||||||||
Sbjct 371 GACGAACGAGGAACCAGGTGTGTGCCGCCTTCCTGATTCTGGAGAAAAATGCCGGTCCGGAAGCAAGATACCCA 444
Query 27 GAGAGCATTGCACCTTTTGGAGGAATATCGTTCAAAACTAAGCCAAACTGAAGACAGACAGCTCAGAAGTTCCA 100
||||||||||||.||.|||||.||||||||.||.||||||||||||||||||||||||||.|||||||||||||
Sbjct 445 GAGAGCATTGCATCTGTTGGAAGAATATCGATCGAAACTAAGCCAAACTGAAGACAGACAACTCAGAAGTTCCA 518
Query 101 TAGAACGGGTTATTAACATATTTCAGAGCAACCTCTTTCAGGCTTTAATAGATATTCAAGAATTTTATGAAGTG 174
||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TAGAGCGGGTTATTAACATATTTCAGAGCAACCTCTTTCAGGCTTTAATAGATATTCAAGAATTTTATGAAGTG 592
Query 175 ACCTTACTGGATAATCCAAAATGTATAGATCGTTCAAAGCCGTCTGAACCAATTCAACCTGTGAATACTTGGGA 248
||||||||.|||||||||||||||.|.||||.||||||||.||.|||||||.||||.|||||||.|||||||||
Sbjct 593 ACCTTACTTGATAATCCAAAATGTGTGGATCATTCAAAGCAGTGTGAACCAGTTCAGCCTGTGACTACTTGGGA 666
Query 249 GATTTCCAGCCTTCCAAGCTCTACTGTGACTTCAGAGACACTGCCAAGCAGCCTTAGCCCTAGTGTAGAGAAAT 322
||||.||||||||||||||.||.|.|||||.|||||.||.|||||..||||||||||||||...||||||||||
Sbjct 667 GATTGCCAGCCTTCCAAGCACTGCCGTGACGTCAGAAACCCTGCCCGGCAGCCTTAGCCCTCCAGTAGAGAAAT 740
Query 323 ACAGGTATCAGGATGAAGATACACCTCCTCAAGAGCATATTTCCCCACAAATCACAAATGAAGTGATAGGTCCA 396
||.||||||||||||||||...||.|||||..|||||||||||.||||||.||||||||||.|||.||||||||
Sbjct 741 ACCGGTATCAGGATGAAGAGGTACTTCCTCCTGAGCATATTTCTCCACAAGTCACAAATGAGGTGCTAGGTCCA 814
Query 397 GAATTGGTTCATGTCTCAGAGAAGAACTTATCAGAGATTGAGAATGTCCATGGATTTGTTTCTCATTCTCATAT 470
|||.||||.||||||||||||||||||.|.||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 GAACTGGTCCATGTCTCAGAGAAGAACCTGTCAGAGATTGAGAATGTCCATGGATTTGTTTCTCATTCTCATAT 888
Query 471 TTCACCAATAAAGGCAAATCCTCCCCCAGTACTGGTCAACACAGATAGCTTGAAAACACCAACTTACGTTAATG 544
.|||||||||||||||||||||||.|||||.||||||||||||||.|||||..|.|||||||||||.|||||||
Sbjct 889 CTCACCAATAAAGGCAAATCCTCCTCCAGTGCTGGTCAACACAGACAGCTTAGAGACACCAACTTATGTTAATG 962
Query 545 GCACAGATGCAGATTATGAATATGAAGAAATCACACTTGAAAGGGGAAATTCAGGGCTTGGTTTCAGCATTGCA 618
||||.||||||||||||||||||||.||||||||||||||||||||||||||.||.||||||||||||||||||
Sbjct 963 GCACTGATGCAGATTATGAATATGAGGAAATCACACTTGAAAGGGGAAATTCGGGTCTTGGTTTCAGCATTGCA 1036
Query 619 G--AGTACGGACAACCCACACATTGGAGATGACTCAAGTATTTTCATTACCAAAATTATCACAGG-GGAGCAGC 689
| .||||.||||||||||||||||||||||||||||||||||||||.||||||||||||||||| |||||.||
Sbjct 1037 GGAGGTACAGACAACCCACACATTGGAGATGACTCAAGTATTTTCATCACCAAAATTATCACAGGCGGAGCGGC 1110
Query 690 CGCCCAAGATGGGAAGATTGCGGGTCAATGACTGTATATTACAAGTAAATGAAGTAGATGTTCGTGATGTAACA 763
.|||||.||| ||||||||||||||.||||||||||||.|...|||||||||||.|||.||||||||||||||.
Sbjct 1111 TGCCCAGGAT-GGAAGATTGCGGGTAAATGACTGTATACTGAGAGTAAATGAAGCAGACGTTCGTGATGTAACC 1183
Query 764 CATAGCAAAGCAGTTGAAGCGTTGAAAGAAGCAGGGTCTATTGTACGCTTGTATGTAAAAAGAAGGAAACCAGT 837
||.|||||||||||.||.||.||.||||||||.||.||||||||.||.||||||||.|||||..||||.||||.
Sbjct 1184 CACAGCAAAGCAGTGGAGGCATTAAAAGAAGCTGGATCTATTGTGCGATTGTATGTGAAAAGGCGGAAGCCAGC 1257
Query 838 GTCAGAAAAAATAATGGAAATAAAGCTCATTAAAGGTCCTAAAGGTCTTGGGTTTAGCATTGCTGGAGGTGTTG 911
.|||||||||||.|||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||
Sbjct 1258 ATCAGAAAAAATCATGGAAATAAAGCTCATTAAAGGTCCTAAAGGTCTTGGGTTCAGCATTGCTGGAGGTGTTG 1331
Query 912 GAAATCAGCATATTCCTGGGGATAATAGCATCTATGTAACCAAAATAATTGAAGGAGGTGCAGCACATAAGGAT 985
||||||||||.||||||||.|||||.|||||||||||||||||||||||||||||||||||||||||.||||||
Sbjct 1332 GAAATCAGCACATTCCTGGTGATAACAGCATCTATGTAACCAAAATAATTGAAGGAGGTGCAGCACACAAGGAT 1405
Query 986 GGCAAACTTCAGATTGGAGATAAACTTTTAGCAGTGAATAACGTATGTTTAGAAGAAGTTACTCATGAAGAAGC 1059
|||||.|||||||||||||||||.|||.||||||||||.|..||.|||||||||||||||||||||||||||||
Sbjct 1406 GGCAAGCTTCAGATTGGAGATAAGCTTCTAGCAGTGAACAGTGTGTGTTTAGAAGAAGTTACTCATGAAGAAGC 1479
Query 1060 AGTAACTGCCTTAAAGAACACATCTGATTTTGTTTATTTGAAAGTGGCAAAACCCACAAGTATGTATATGAATG 1133
|||.||||||||||||||.|||||||||||||||||||||||||||||||||||.||||
Sbjct 1480 AGTGACTGCCTTAAAGAATACATCTGATTTTGTTTATTTGAAAGTGGCAAAACCAACAA--------------- 1538
Query 1134 ATGGCTATGCACCACCTGATATCACCAACTCTTCTTCTCAGCCTGTTGATAACCATGTTAGCCCATCTTCCTTC 1207
||||||||||..|||||||.||||||||.|||||.||.||||.|
Sbjct 1539 ------------------------------CTTCTTCTCAATCTGTTGACAACCATGTCAGCCCGTCCTCCTGC 1582
Query 1208 TTGGGCCAGACACCAGCATCTCCAGCCAGATACTC-CCCAGTTTCTAAAGCAGTACTTGGAGATGATGAAATTA 1280
|||||||||||.|||.|.||.||||||||.||||| |||| ||||||||||.||.||.||||||||.||.||.|
Sbjct 1583 TTGGGCCAGACGCCAACGTCACCAGCCAGGTACTCACCCA-TTTCTAAAGCTGTGCTCGGAGATGACGAGATCA 1655
Query 1281 CAAGGGAACCTAGAAAAGTTGTTCTTCATCGTGGCTCAACGGGCCTTGGTTTCAACATTGTAGGAGGAGAAGAT 1354
|.||||||||||||||||||||||||||||||||||||||.||.||||||||.||||||||.|||||.||||||
Sbjct 1656 CTAGGGAACCTAGAAAAGTTGTTCTTCATCGTGGCTCAACAGGACTTGGTTTTAACATTGTGGGAGGTGAAGAT 1729
Query 1355 GGAGAAGGAATATTTATTTCCTTTATCTTAGCCGGAGGACCTGCTGATCTAAGTGGAGAGCTCAGAAAAGGAGA 1428
||||||||.||.|||||.|||||.|||.|.||.||.||||||||||||||||||||||||||||||||||||||
Sbjct 1730 GGAGAAGGGATTTTTATCTCCTTCATCCTTGCTGGCGGACCTGCTGATCTAAGTGGAGAGCTCAGAAAAGGAGA 1803
Query 1429 TCGTATTATATCGGTAAACAGTGTTGACCTCAGAGCTGCTAGTCATGAGCAGGCAGCAGCTGCATTGAAAAATG 1502
|||.||.||||||||.|||||||||||||||||||||||.|||||.||.||.||||||||||||.|.||.||.|
Sbjct 1804 TCGCATCATATCGGTGAACAGTGTTGACCTCAGAGCTGCAAGTCACGAACAAGCAGCAGCTGCACTAAAGAACG 1877
Query 1503 CTGGCCAGGCTGTCACAATTGTTGCACAATATCGACCTGAAGAATACAGTCGTTTTGAAGCTAAAATACATGAT 1576
|.|||||.||.|||||.||.|||||.|||||||||||.|||||.|||||||||||||||||||||||.|||||.
Sbjct 1878 CAGGCCAAGCCGTCACCATCGTTGCGCAATATCGACCCGAAGAGTACAGTCGTTTTGAAGCTAAAATCCATGAC 1951
Query 1577 TTACGGGAGCAGATGATGAATAGTAGTATTAGTTCAGGGTCAGGTTCTCTTCGAACTAGCCAGAAGCGATCCCT 1650
|||||||||||||||||||||||.|||.|.||||||||||||||.|||||||||||.|||||||||||.|||||
Sbjct 1952 TTACGGGAGCAGATGATGAATAGCAGTGTCAGTTCAGGGTCAGGGTCTCTTCGAACCAGCCAGAAGCGCTCCCT 2025
Query 1651 CTATGTC-----AGAGCCCTTTTTGATTATGACAAGACTAAAGACAGTGGGCTTCCCAGTCAGGGACTGAACTT 1719
||||||| ||||||||.||||||||||||||||||||.|||||.||||||||||||||.|||||||||||
Sbjct 2026 CTATGTCAGTCTAGAGCCCTCTTTGATTATGACAAGACTAAGGACAGCGGGCTTCCCAGTCAAGGACTGAACTT 2099
Query 1720 CAAATTTGGAGATATCCTCCATGTTATTAATGCTTCTGATGATGAATGGTGGCAAGCCAGGCAGGTTACACCAG 1793
|...||||||||.|||||||||||.||.|||||||||||.||.||.||||||||||||||||||||.||.||||
Sbjct 2100 CCGCTTTGGAGACATCCTCCATGTCATCAATGCTTCTGACGACGAGTGGTGGCAAGCCAGGCAGGTCACCCCAG 2173
Query 1794 ATGGTGAGAGCGATGAGGTCGGAGTGATTCCCAGTAAACGCAGAGTTGAGAAGAAAGAACGAGCCCGATTAAAA 1867
|.||.|||||.||.||.||||||||||||||.||||||||.||||||||||||||.||||||||||||||||||
Sbjct 2174 ACGGGGAGAGTGACGAAGTCGGAGTGATTCCTAGTAAACGAAGAGTTGAGAAGAAGGAACGAGCCCGATTAAAA 2247
Query 1868 ACAGTGAAATTCAATTCTAAAACGA---GAGATAAAGGGCAGTCATTC--AATGACAAGCG-TAAAAAGAACCT 1935
||.||.|||||||||||||||||.| |||||||||||.|| ||.| .|.||||.|.| |.|||||
Sbjct 2248 ACGGTCAAATTCAATTCTAAAACAAGAGGAGATAAAGGGGAG--ATCCCTGACGACATGGGATCAAAAG----- 2314
Query 1936 CTTTTCCCGAA------AATTCCCCTTCTACAAGAACAAGGACCAG----AGTGAGCAGGAAACAAGTGATGCT 1999
.||.||| || |||||| |.| |||| |||||
Sbjct 2315 ----GCCTGAAGCACGTAA-----CTTCTA-ATG--------CCAGCGATAGTGA------------------- 2351
Query 2000 CACAAGTATGTATATGAATGATGGCTATGCACCACCTGATATCACCAACTGTGGTCAAGAAGAATACGTCTTAT 2073
|||||..| ||.||||||||||||||||.||.||||
Sbjct 2352 ---AAGTAGTT------------------------------------ACCGTGGTCAAGAAGAATATGTTTTAT 2386
Query 2074 CTTATGAACCAGTGAATCAACAAGAAGTTAATTATACTCGACCAGTGATCATATTGGGACCTATGAAAGACAGG 2147
|||||||.|||||||||||||||||||||||||||||.||||||||.||||||||.|||||||||||||||||.
Sbjct 2387 CTTATGAGCCAGTGAATCAACAAGAAGTTAATTATACCCGACCAGTCATCATATTAGGACCTATGAAAGACAGA 2460
Query 2148 ATAAATGATGACTTGATCTCAGAATTTCCTGACAAATTTGGATCCTGTGTTCCTCATACAACTAGACCAAAACG 2221
.|||||||||||||.|||||||||||||||||||||||||||||||||||.|||||||||||||||||.||.||
Sbjct 2461 GTAAATGATGACTTAATCTCAGAATTTCCTGACAAATTTGGATCCTGTGTCCCTCATACAACTAGACCGAAGCG 2534
Query 2222 AGATTATGAGGTAGATGGAAGAGATTATCATTTTGTGACTTCAAGAGAGCAGATGGAAAAAGATATCCAGGAAC 2295
.||.||||||||.||||||.|||||||||||||||||||||||||.||.|||||||||||.|||||.|||||.|
Sbjct 2535 TGACTATGAGGTGGATGGACGAGATTATCATTTTGTGACTTCAAGGGAACAGATGGAAAAGGATATTCAGGAGC 2608
Query 2296 ATAAATTCATTGAAGCTGGCCAGTATAACAATCATCTATATGGAACAAGTGTTCAGTCTGTACGAGAAGTAGCA 2369
||||.|||||||||||.||||||||||||||.|||||.|||||.||.||.||.|||||.||.||||.|||.|||
Sbjct 2609 ATAAGTTCATTGAAGCCGGCCAGTATAACAACCATCTGTATGGGACGAGCGTGCAGTCCGTGCGAGCAGTGGCA 2682
Query 2370 GAAAAGGGCAAACACTGTATCCTTGATGTGTCTGGAAATGCCATAAAGAGATTACAGATTGCACAGCTTTACCC 2443
||.|||||||||||.|||||||||||||||||||||||||||||||||||.||.|||||||||||||||||.||
Sbjct 2683 GAGAAGGGCAAACATTGTATCCTTGATGTGTCTGGAAATGCCATAAAGAGGTTGCAGATTGCACAGCTTTATCC 2756
Query 2444 TATCTCCATTTTTATTAAACCCAAATCCATGGAAAATATCATGGAAATGAATAAGCGTCTAACAGAAGAACAAG 2517
.||.||.||||||||||||||||||||||||||||||||||||||||||||.|||||.|||||||||||.||.|
Sbjct 2757 AATATCTATTTTTATTAAACCCAAATCCATGGAAAATATCATGGAAATGAACAAGCGCCTAACAGAAGAGCAGG 2830
Query 2518 CCAGAAAAACATTTGAGAGAGCCATGAAACTGGAACAGGAGTTTACTGAACATTTCACAGCTATTGTACAGGGG 2591
||||||||||||||||||||||||||||.|||||.||||||||.|||||.|||||||||||||||||.|||||.
Sbjct 2831 CCAGAAAAACATTTGAGAGAGCCATGAAGCTGGAGCAGGAGTTCACTGAGCATTTCACAGCTATTGTCCAGGGA 2904
Query 2592 GATACGCTGGAAGACATTTACAACCAAGTGAAACAGATCATAGAAGAACAATCTGGTTCTTACATCTGGGTTCC 2665
||.||||||||.|||||||||||||||||||||||||||||.||||||||.|||||..|||||||||||||.||
Sbjct 2905 GACACGCTGGAGGACATTTACAACCAAGTGAAACAGATCATCGAAGAACAGTCTGGGCCTTACATCTGGGTCCC 2978
Query 2666 GGCAAAAGAAAAGCTA---------------------------------------------------------- 2681
.||.||||||||||||
Sbjct 2979 AGCGAAAGAAAAGCTATGAAGACGGATGTTGTTCTTTCTTTTTTCCATGGTCTCATCTCTTGCCCTGTTGTGGA 3052
Query 2682 -------------------------------------------------------------------------- 2681
Sbjct 3053 GTCTGTCTTCGGTGTCCTCCACACTGACACAGATCCCCTCCTCATGGTCGGCAGTTGTGCCCGTTTTTTGACAT 3126
Query 2682 -------------------------------------------------------------------------- 2681
Sbjct 3127 CTGTGTCCCTTCATGTTGCATCATCTGTACTATTCTGTGTTACTCTTGGTTTCTGGCCACTTTTCAGAATGAAG 3200
Query 2682 -------------------------------------------------------------------------- 2681
Sbjct 3201 ATGAATGGCCTGACCAGCTATCTAGGGTTTGGGGAGATGCAAAATTGTAAAATTCCTTAATGTTTAAGGGAAAG 3274
Query 2682 -------------------------------------------------------------------------- 2681
Sbjct 3275 TTAACTTTAAGAGATTTTCAGAAAAGCTTTATATACATTCTTTTCCAATTTCAGTACAAATGAAAGAAAAGTGG 3348
Query 2682 -------------------------------------------------------------------------- 2681
Sbjct 3349 TTTTAATCAGTGATTTAGTGGACCTTGAGCAACTGTGCACGCTTCACTCTAATAGCATGGTTTGGCCAGTGTAT 3422
Query 2682 -------------------------------------------------------------------------- 2681
Sbjct 3423 TAGCTCTCAAGTTCTTTCCTCAATTGACTTCTGCTATTAAAGTAATGATTTCATTAAAAACAAATAAGAAAAAT 3496
Query 2682 -------------------------------------------------------------------------- 2681
Sbjct 3497 AGGGATTTATTTCAAAATTAATGTCTGAGTTAACTCATAATTTCAGGAGTTGTTTGTTATTCGTGGCAGGTCTT 3570
Query 2682 -------------------------------------------------------------------------- 2681
Sbjct 3571 TATTGTGTGCCCTCCCATGGGACACGTGCCAGGACTAACCATGGAGGTGTGCAGCTCTGTGGGAAGTGAGTGGC 3644
Query 2682 -------------------------------------------------------------------------- 2681
Sbjct 3645 TCTCGAGCCTTGTCCGTACACTGTGGTTACGGCTCTGTCGCGGTCAAAGAACTCACTTTACACACAGAACTGCA 3718
Query 2682 -------------------------------------------------------------------------- 2681
Sbjct 3719 GACAAGAAAGGGTTTCGGTGGACTTGTAGCAATCATGGCAGTGGGAAGGAGTCCAATTCATAGCCTAAAATTTT 3792
Query 2682 -------------------------------------------------------------------------- 2681
Sbjct 3793 AATGTATGCTTAGGGAGGGGTCAGATTTTAATGACTATTTTACCCACAATAACTGCCTATTTTGTTATAATAAA 3866
Query 2682 -------------------------------------------------------------------------- 2681
Sbjct 3867 ATATATATAAATATATATAAAACTTTCTTTAACTAAACTCTGTAACTATGGGAATTATTTTCTTTACATAGTTG 3940
Query 2682 -------------------------------------------------------------------------- 2681
Sbjct 3941 CACACACAAACATATATATATATATTTAAAATATATTTTTCTTTTGCCACCTACTTCTAACTTTTTGTTTGGTT 4014
Query 2682 -------------------------------------------------------------------------- 2681
Sbjct 4015 TTTAAATTAAATATTAATTGATGAGACTTACCGTCCTTAATCATGTGAACTGAAGACAAGTGTCCGGTGGCGGT 4088
Query 2682 -------------------------------------------------------------------------- 2681
Sbjct 4089 GAGGAGAAACCTCTAGGAGATTAGGTTGTGAGTAGGCGCCAAGCCTGTTCTCCTCTTTCCTACAGAAGTTCCAG 4162
Query 2682 -------------------------------------------------------------------------- 2681
Sbjct 4163 AAGGTTCCTAGGTTTCCTGTCAGTGTTGTGTTCTTGTCATGGAGTTTGATTTCGGTCCTCTGCCTTTCCTCCTA 4236
Query 2682 -------------------------------------------------------------------------- 2681
Sbjct 4237 GTTCTCCTCATTTTATTAATAGACAGACAAACTCCATTTTTGCGACTCCCCGAGACACTTCATCTTGCGTAGCT 4310
Query 2682 -------------------------------------------------------------------------- 2681
Sbjct 4311 GCGCTGAACTAGAATTGCACAGGTGTTAAGTAAACGACTTGAGAAAGGTTAGTGAGAGGCAGATGCCTTCAGAA 4384
Query 2682 -------------------------------------------------------------------------- 2681
Sbjct 4385 GTCACTTTCTCTAGTCCATTATTAATATCATTTGGCTTCCCTTTGCTCTTTGGAACTGTTTATTCGATACGTGA 4458
Query 2682 -------------------------------------------------------------------------- 2681
Sbjct 4459 TTTTGGCAACTCTTTAAAATTTCCTAAATGAGTACTGGGTTGTAAAGAATTATCCATTCCATTTATGAGAAAGA 4532
Query 2682 ---------------------------------------- 2681
Sbjct 4533 GGAGAACAGCTAATAAACTTTATTGTAAAATCCATATGTT 4572
