Nucleotide Global Alignment

Description

Query:
ccsbBroad304_14615
Subject:
XM_017316870.1
Aligned Length:
2702
Identities:
2086
Gaps:
374

Alignment

Query    1  ATGCCGGTCCGGAAGCAAGATACCCAGAGAGCATTGCACCTTTTGGAGGAATATCGTTCAAAACTAAGCCAAAC  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  TGAAGACAGACAGCTCAGAAGTTCCATAGAACGGGTTATTAACATATTTCAGAGCAACCTCTTTCAGGCTTTAA  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  TAGATATTCAAGAATTTTATGAAGTGACCTTACTGGATAATCCAAAATGTATAGATCGTTCAAAGCCGTCTGAA  222
                                                              ||.|||.|                
Sbjct    1  --------------------------------------------------ATGGATTG----------------  8

Query  223  CCAATTCAACCTGTGAATACTTGGGAGATTTCCAGCCTTCCAAGCTCTACTGTGACTTCAGAGACACTGCCAAG  296
                     ||||||.||                                |||.|||.|               
Sbjct    9  ---------CCTGTGCAT--------------------------------TGTAACTAC---------------  26

Query  297  CAGCCTTAGCCCTAGTGTAGAGAAATACAGGTATCAGGATGAAGATACACCTCCTCAAGAGCATATTTCCCCAC  370
                              |.||||||||.||||||||||||||||...||.|||||..|||||||||||.||||
Sbjct   27  ------------------AAAGAAATACCGGTATCAGGATGAAGAGGTACTTCCTCCTGAGCATATTTCTCCAC  82

Query  371  AAATCACAAATGAAGTGATAGGTCCAGAATTGGTTCATGTCTCAGAGAAGAACTTATCAGAGATTGAGAATGTC  444
            ||.||||||||||.|||.|||||||||||.||||.||||||||||||||||||.|.||||||||||||||||||
Sbjct   83  AAGTCACAAATGAGGTGCTAGGTCCAGAACTGGTCCATGTCTCAGAGAAGAACCTGTCAGAGATTGAGAATGTC  156

Query  445  CATGGATTTGTTTCTCATTCTCATATTTCACCAATAAAGGCAAATCCTCCCCCAGTACTGGTCAACACAGATAG  518
            ||||||||||||||||||||||||||.|||||||||||||||||||||||.|||||.||||||||||||||.||
Sbjct  157  CATGGATTTGTTTCTCATTCTCATATCTCACCAATAAAGGCAAATCCTCCTCCAGTGCTGGTCAACACAGACAG  230

Query  519  CTTGAAAACACCAACTTACGTTAATGGCACAGATGCAGATTATGAATATGAAGAAATCACACTTGAAAGGGGAA  592
            |||..|.|||||||||||.|||||||||||.||||||||||||||||||||.||||||||||||||||||||||
Sbjct  231  CTTAGAGACACCAACTTATGTTAATGGCACTGATGCAGATTATGAATATGAGGAAATCACACTTGAAAGGGGAA  304

Query  593  ATTCAGGGCTTGGTTTCAGCATTGCAG--AGTACGGACAACCCACACATTGGAGATGACTCAAGTATTTTCATT  664
            ||||.||.|||||||||||||||||||  .||||.||||||||||||||||||||||||||||||||||||||.
Sbjct  305  ATTCGGGTCTTGGTTTCAGCATTGCAGGAGGTACAGACAACCCACACATTGGAGATGACTCAAGTATTTTCATC  378

Query  665  ACCAAAATTATCACAGG-GGAGCAGCCGCCCAAGATGGGAAGATTGCGGGTCAATGACTGTATATTACAAGTAA  737
            ||||||||||||||||| |||||.||.|||||.||| ||||||||||||||.||||||||||||.|...|||||
Sbjct  379  ACCAAAATTATCACAGGCGGAGCGGCTGCCCAGGAT-GGAAGATTGCGGGTAAATGACTGTATACTGAGAGTAA  451

Query  738  ATGAAGTAGATGTTCGTGATGTAACACATAGCAAAGCAGTTGAAGCGTTGAAAGAAGCAGGGTCTATTGTACGC  811
            ||||||.|||.||||||||||||||.||.|||||||||||.||.||.||.||||||||.||.||||||||.||.
Sbjct  452  ATGAAGCAGACGTTCGTGATGTAACCCACAGCAAAGCAGTGGAGGCATTAAAAGAAGCTGGATCTATTGTGCGA  525

Query  812  TTGTATGTAAAAAGAAGGAAACCAGTGTCAGAAAAAATAATGGAAATAAAGCTCATTAAAGGTCCTAAAGGTCT  885
            ||||||||.|||||..||||.||||..|||||||||||.|||||||||||||||||||||||||||||||||||
Sbjct  526  TTGTATGTGAAAAGGCGGAAGCCAGCATCAGAAAAAATCATGGAAATAAAGCTCATTAAAGGTCCTAAAGGTCT  599

Query  886  TGGGTTTAGCATTGCTGGAGGTGTTGGAAATCAGCATATTCCTGGGGATAATAGCATCTATGTAACCAAAATAA  959
            ||||||.|||||||||||||||||||||||||||||.||||||||.|||||.||||||||||||||||||||||
Sbjct  600  TGGGTTCAGCATTGCTGGAGGTGTTGGAAATCAGCACATTCCTGGTGATAACAGCATCTATGTAACCAAAATAA  673

Query  960  TTGAAGGAGGTGCAGCACATAAGGATGGCAAACTTCAGATTGGAGATAAACTTTTAGCAGTGAATAACGTATGT  1033
            |||||||||||||||||||.|||||||||||.|||||||||||||||||.|||.||||||||||.|..||.|||
Sbjct  674  TTGAAGGAGGTGCAGCACACAAGGATGGCAAGCTTCAGATTGGAGATAAGCTTCTAGCAGTGAACAGTGTGTGT  747

Query 1034  TTAGAAGAAGTTACTCATGAAGAAGCAGTAACTGCCTTAAAGAACACATCTGATTTTGTTTATTTGAAAGTGGC  1107
            |||||||||||||||||||||||||||||.||||||||||||||.|||||||||||||||||||||||||||||
Sbjct  748  TTAGAAGAAGTTACTCATGAAGAAGCAGTGACTGCCTTAAAGAATACATCTGATTTTGTTTATTTGAAAGTGGC  821

Query 1108  AAAACCCACAAGTATGTATATGAATGATGGCTATGCACCACCTGATATCACCAACTCTTCTTCTCAGCCTGTTG  1181
            ||||||.||||||||||||||.|||||||||||||||||||||||.|||||.||.|||||||||||..||||||
Sbjct  822  AAAACCAACAAGTATGTATATAAATGATGGCTATGCACCACCTGACATCACTAATTCTTCTTCTCAATCTGTTG  895

Query 1182  ATAACCATGTTAGCCCATCTTCCTTCTTGGGCCAGACACCAGCATCTCCAGCCAGATACTC-CCCAGTTTCTAA  1254
            |.||||||||.|||||.||.||||.||||||||||||.|||.|.||.||||||||.||||| |||| |||||||
Sbjct  896  ACAACCATGTCAGCCCGTCCTCCTGCTTGGGCCAGACGCCAACGTCACCAGCCAGGTACTCACCCA-TTTCTAA  968

Query 1255  AGCAGTACTTGGAGATGATGAAATTACAAGGGAACCTAGAAAAGTTGTTCTTCATCGTGGCTCAACGGGCCTTG  1328
            |||.||.||.||||||||.||.||.||.||||||||||||||||||||||||||||||||||||||.||.||||
Sbjct  969  AGCTGTGCTCGGAGATGACGAGATCACTAGGGAACCTAGAAAAGTTGTTCTTCATCGTGGCTCAACAGGACTTG  1042

Query 1329  GTTTCAACATTGTAGGAGGAGAAGATGGAGAAGGAATATTTATTTCCTTTATCTTAGCCGGAGGACCTGCTGAT  1402
            ||||.||||||||.|||||.||||||||||||||.||.|||||.|||||.|||.|.||.||.||||||||||||
Sbjct 1043  GTTTTAACATTGTGGGAGGTGAAGATGGAGAAGGGATTTTTATCTCCTTCATCCTTGCTGGCGGACCTGCTGAT  1116

Query 1403  CTAAGTGGAGAGCTCAGAAAAGGAGATCGTATTATATCGGTAAACAGTGTTGACCTCAGAGCTGCTAGTCATGA  1476
            |||||||||||||||||||||||||||||.||.||||||||.|||||||||||||||||||||||.|||||.||
Sbjct 1117  CTAAGTGGAGAGCTCAGAAAAGGAGATCGCATCATATCGGTGAACAGTGTTGACCTCAGAGCTGCAAGTCACGA  1190

Query 1477  GCAGGCAGCAGCTGCATTGAAAAATGCTGGCCAGGCTGTCACAATTGTTGCACAATATCGACCTGAAGAATACA  1550
            .||.||||||||||||.|.||.||.||.|||||.||.|||||.||.|||||.|||||||||||.|||||.||||
Sbjct 1191  ACAAGCAGCAGCTGCACTAAAGAACGCAGGCCAAGCCGTCACCATCGTTGCGCAATATCGACCCGAAGAGTACA  1264

Query 1551  GTCGTTTTGAAGCTAAAATACATGATTTACGGGAGCAGATGATGAATAGTAGTATTAGTTCAGGGTCAGGTTCT  1624
            |||||||||||||||||||.|||||.|||||||||||||||||||||||.|||.|.||||||||||||||.|||
Sbjct 1265  GTCGTTTTGAAGCTAAAATCCATGACTTACGGGAGCAGATGATGAATAGCAGTGTCAGTTCAGGGTCAGGGTCT  1338

Query 1625  CTTCGAACTAGCCAGAAGCGATCCCTCTATGTCAGAGCCCTTTTTGATTATGACAAGACTAAAGACAGTGGGCT  1698
            ||||||||.|||||||||||.||||||||||||||||||||.||||||||||||||||||||.|||||.|||||
Sbjct 1339  CTTCGAACCAGCCAGAAGCGCTCCCTCTATGTCAGAGCCCTCTTTGATTATGACAAGACTAAGGACAGCGGGCT  1412

Query 1699  TCCCAGTCAGGGACTGAACTTCAAATTTGGAGATATCCTCCATGTTATTAATGCTTCTGATGATGAATGGTGGC  1772
            |||||||||.||||||||||||...||||||||.|||||||||||.||.|||||||||||.||.||.|||||||
Sbjct 1413  TCCCAGTCAAGGACTGAACTTCCGCTTTGGAGACATCCTCCATGTCATCAATGCTTCTGACGACGAGTGGTGGC  1486

Query 1773  AAGCCAGGCAGGTTACACCAGATGGTGAGAGCGATGAGGTCGGAGTGATTCCCAGTAAACGCAGAGTTGAGAAG  1846
            |||||||||||||.||.|||||.||.|||||.||.||.||||||||||||||.||||||||.||||||||||||
Sbjct 1487  AAGCCAGGCAGGTCACCCCAGACGGGGAGAGTGACGAAGTCGGAGTGATTCCTAGTAAACGAAGAGTTGAGAAG  1560

Query 1847  AAAGAACGAGCCCGATTAAAAACAGTGAAATTCAATTCTAAAACGA---GAGATAAAGGGCAGTCATTC--AAT  1915
            ||.||||||||||||||||||||.||.|||||||||||||||||.|   |||||||||||.||  ||.|  .|.
Sbjct 1561  AAGGAACGAGCCCGATTAAAAACGGTCAAATTCAATTCTAAAACAAGAGGAGATAAAGGGGAG--ATCCCTGAC  1632

Query 1916  GACAAGCG-TAAAAAGAACCTCTTTTCCCGAA------AATTCCCCTTCTACAAGAACAAGGACCAG----AGT  1978
            ||||.|.| |.|||||         .||.|||      ||     |||||| |.|        ||||    |||
Sbjct 1633  GACATGGGATCAAAAG---------GCCTGAAGCACGTAA-----CTTCTA-ATG--------CCAGCGATAGT  1683

Query 1979  GAGCAGGAAACAAGTGATGCTCACAAGTATGTA-TATGAATGATGGCTATGCACCACCTGATATCACCAACTGT  2051
            ||                      |||||..|| .|||||| |||||  |||           |||  ||..||
Sbjct 1684  GA----------------------AAGTAGTTACCATGAAT-ATGGC--TGC-----------TCA--AAAGGT  1719

Query 2052  GGTCAAGAAGAATACGTCTTATCTTATGAACCAGTGAATCAACAAGAAGTTAATTATACTCGACCAGTGATCAT  2125
            ||||||||||||||.||.|||||||||||.|||||||||||||||||||||||||||||.||||||||.|||||
Sbjct 1720  GGTCAAGAAGAATATGTTTTATCTTATGAGCCAGTGAATCAACAAGAAGTTAATTATACCCGACCAGTCATCAT  1793

Query 2126  ATTGGGACCTATGAAAGACAGGATAAATGATGACTTGATCTCAGAATTTCCTGACAAATTTGGATCCTGTGTTC  2199
            |||.|||||||||||||||||..|||||||||||||.|||||||||||||||||||||||||||||||||||.|
Sbjct 1794  ATTAGGACCTATGAAAGACAGAGTAAATGATGACTTAATCTCAGAATTTCCTGACAAATTTGGATCCTGTGTCC  1867

Query 2200  CTCATACAACTAGACCAAAACGAGATTATGAGGTAGATGGAAGAGATTATCATTTTGTGACTTCAAGAGAGCAG  2273
            ||||||||||||||||.||.||.||.||||||||.||||||.|||||||||||||||||||||||||.||.|||
Sbjct 1868  CTCATACAACTAGACCGAAGCGTGACTATGAGGTGGATGGACGAGATTATCATTTTGTGACTTCAAGGGAACAG  1941

Query 2274  ATGGAAAAAGATATCCAGGAACATAAATTCATTGAAGCTGGCCAGTATAACAATCATCTATATGGAACAAGTGT  2347
            ||||||||.|||||.|||||.|||||.|||||||||||.||||||||||||||.|||||.|||||.||.||.||
Sbjct 1942  ATGGAAAAGGATATTCAGGAGCATAAGTTCATTGAAGCCGGCCAGTATAACAACCATCTGTATGGGACGAGCGT  2015

Query 2348  TCAGTCTGTACGAGAAGTAGCAGAAAAGGGCAAACACTGTATCCTTGATGTGTCTGGAAATGCCATAAAGAGAT  2421
            .|||||.||.||||.|||.|||||.|||||||||||.|||||||||||||||||||||||||||||||||||.|
Sbjct 2016  GCAGTCCGTGCGAGCAGTGGCAGAGAAGGGCAAACATTGTATCCTTGATGTGTCTGGAAATGCCATAAAGAGGT  2089

Query 2422  TACAGATTGCACAGCTTTACCCTATCTCCATTTTTATTAAACCCAAATCCATGGAAAATATCATGGAAATGAAT  2495
            |.|||||||||||||||||.||.||.||.||||||||||||||||||||||||||||||||||||||||||||.
Sbjct 2090  TGCAGATTGCACAGCTTTATCCAATATCTATTTTTATTAAACCCAAATCCATGGAAAATATCATGGAAATGAAC  2163

Query 2496  AAGCGTCTAACAGAAGAACAAGCCAGAAAAACATTTGAGAGAGCCATGAAACTGGAACAGGAGTTTACTGAACA  2569
            |||||.|||||||||||.||.|||||||||||||||||||||||||||||.|||||.||||||||.|||||.||
Sbjct 2164  AAGCGCCTAACAGAAGAGCAGGCCAGAAAAACATTTGAGAGAGCCATGAAGCTGGAGCAGGAGTTCACTGAGCA  2237

Query 2570  TTTCACAGCTATTGTACAGGGGGATACGCTGGAAGACATTTACAACCAAGTGAAACAGATCATAGAAGAACAAT  2643
            |||||||||||||||.|||||.||.||||||||.|||||||||||||||||||||||||||||.||||||||.|
Sbjct 2238  TTTCACAGCTATTGTCCAGGGAGACACGCTGGAGGACATTTACAACCAAGTGAAACAGATCATCGAAGAACAGT  2311

Query 2644  CTGGTTCTTACATCTGGGTTCCGGCAAAAGAAAAGCTA  2681
            ||||..|||||||||||||.||.||.||||||||||||
Sbjct 2312  CTGGGCCTTACATCTGGGTCCCAGCGAAAGAAAAGCTA  2349

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