Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_14615
- Subject:
- XR_924108.3
- Aligned Length:
- 3354
- Identities:
- 1987
- Gaps:
- 1364
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TGGCGGAAAGTTTCGGGGGAGAGCGGTTGGGGGCGCGGAAGGAGGCGAGGTTCCGGGGGTGGGGCGTGCGGCAG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CAACTGGGCGAGCGGGCCGGGGGGCCGCGGCGAGCGAGGAGGCGGCGCGGCCGAGAAGGAGGACGAGGCCGCGG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GGGTGCGGCGGCCCAGGGGAGCTCCTCCCCCGTCCCTTCGCCCCCTCCGCTCGGCTCCGCGGGCCCCGGGCGGG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GCGGGGGTACGTGGAGCGGGGCCGGGCTGGGGAGCTGCTCCGAGTCTGGCCGGGGCGCACCCCAGTTCCGAGCG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CACGCCGCTCACCGGAACTTTGTGGCGGCGCCGCAGGTGTGGGGGCCCGCGGAGGTGTGCATGCGGGGCGCGAG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GGCGTCGCGGAGAGCGGCCGCTGCCCTGTCCGGCCCCCGCTGGAGCAGCCCGGAGGCAGCGAGCAAGGAGAAAG 444
Query 1 -------------------------------ATGCCGGTCCGGAAGCAAGATACCCAGAGAGCATTGCACCTTT 43
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GTGTGTGCCCTCTTCCTGATTCTGGAGAAAAATGCCGGTCCGGAAGCAAGATACCCAGAGAGCATTGCACCTTT 518
Query 44 TGGAGGAATATCGTTCAAAACTAAGCCAAACTGAAGACAGACAGCTCAGAAGTTCCATAGAACGGGTTATTAAC 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TGGAGGAATATCGTTCAAAACTAAGCCAAACTGAAGACAGACAGCTCAGAAGTTCCATAGAACGGGTTATTAAC 592
Query 118 ATATTTCAGAGCAACCTCTTTCAGGCTTTAATAGATATTCAAGAATTTTATGAAGTGACCTTACTGGATAATCC 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 ATATTTCAGAGCAACCTCTTTCAGGCTTTAATAGATATTCAAGAATTTTATGAAGTGACCTTACTGGATAATCC 666
Query 192 AAAATGTATAGATCGTTCAAAGCCGTCTGAACCAATTCAACCTGTGAATACTTGGGAGATTTCCAGCCTTCCAA 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 AAAATGTATAGATCGTTCAAAGCCGTCTGAACCAATTCAACCTGTGAATACTTGGGAGATTTCCAGCCTTCCAA 740
Query 266 GCTCTACTGTGACTTCAGAGACACTGCCAAGCAGCCTTAGCCCTAGTGTAGAGAAATACAGGTATCAGGATGAA 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 GCTCTACTGTGACTTCAGAGACACTGCCAAGCAGCCTTAGCCCTAGTGTAGAGAAATACAGGTATCAGGATGAA 814
Query 340 GATACACCTCCTCAAGAGCATATTTCCCCACAAATCACAAATGAAGTGATAGGTCCAGAATTGGTTCATGTCTC 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 GATACACCTCCTCAAGAGCATATTTCCCCACAAATCACAAATGAAGTGATAGGTCCAGAATTGGTTCATGTCTC 888
Query 414 AGAGAAGAACTTATCAGAGATTGAGAATGTCCATGGATTTGTTTCTCATTCTCATATTTCACCAATAA------ 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 AGAGAAGAACTTATCAGAGATTGAGAATGTCCATGGATTTGTTTCTCATTCTCATATTTCACCAATAAAGCCAA 962
Query 482 -------------------------------------------------------------------------- 481
Sbjct 963 CAGAAGCTGTTCTTCCCTCTCCTCCCACTGTCCCTGTGATCCCTGTCCTGCCAGTCCCTGCTGAGAATACTGTC 1036
Query 482 -------------------AGGCAAATCCTCCCCCAGTACTGGTCAACACAGATAGCTTGAAAACACCAACTTA 536
|||||||||||||||||||||||||||||||||||||||||.|||||||||||||
Sbjct 1037 ATCCTACCCACCATACCACAGGCAAATCCTCCCCCAGTACTGGTCAACACAGATAGCTTGGAAACACCAACTTA 1110
Query 537 CGTTAATGGCACAGATGCAGATTATGAATATGAAGAAATCACACTTGAAAGGGGAAATTCAGGGCTTGGTTTCA 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 CGTTAATGGCACAGATGCAGATTATGAATATGAAGAAATCACACTTGAAAGGGGAAATTCAGGGCTTGGTTTCA 1184
Query 611 GCATTGCAG--AGTACGGACAACCCACACATTGGAGATGACTCAAGTATTTTCATTACCAAAATTATCACA-GG 681
||||||||| .||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1185 GCATTGCAGGAGGTACGGACAACCCACACATTGGAGATGACTCAAGTATTTTCATTACCAAAATTATCACAGGG 1258
Query 682 GGAGCAGCCGCCCAAGATGGGAAGATTGCGGGTCAATGACTGTATATTACAAGTAAATGAAGTAGATGTTCGTG 755
|||||||||||||||||| |||||||||||||||||||||||||||||||.|||||||||||||||||||||||
Sbjct 1259 GGAGCAGCCGCCCAAGAT-GGAAGATTGCGGGTCAATGACTGTATATTACGAGTAAATGAAGTAGATGTTCGTG 1331
Query 756 ATGTAACACATAGCAAAGCAGTTGAAGCGTTGAAAGAAGCAGGGTCTATTGTACGCTTGTATGTAAAAAGAAGG 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1332 ATGTAACACATAGCAAAGCAGTTGAAGCGTTGAAAGAAGCAGGGTCTATTGTACGCTTGTATGTAAAAAGAAGG 1405
Query 830 AAACCAGTGTCAGAAAAAATAATGGAAATAAAGCTCATTAAAGGTCCTAAAGGTCTTGGGTTTAGCATTGCTGG 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1406 AAACCAGTGTCAGAAAAAATAATGGAAATAAAGCTCATTAAAGGTCCTAAAGGTCTTGGGTTTAGCATTGCTGG 1479
Query 904 AGGTGTTGGAAATCAGCATATTCCTGGGGATAATAGCATCTATGTAACCAAAATAATTGAAGGAGGTGCAGCAC 977
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1480 AGGTGTTGGAAATCAGCATATTCCTGGGGATAATAGCATCTATGTAACCAAAATAATTGAAGGAGGTGCAGCAC 1553
Query 978 ATAAGGATGGCAAACTTCAGATTGGAGATAAACTTTTAGCAGTGAATAACGTATGTTTAGAAGAAGTTACTCAT 1051
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1554 ATAAGGATGGCAAACTTCAGATTGGAGATAAACTTTTAGCAGTGAATAACGTATGTTTAGAAGAAGTTACTCAT 1627
Query 1052 GAAGAAGCAGTAACTGCCTTAAAGAACACATCTGATTTTGTTTATTTGAAAGTGGCAAAACCCACAAGTATGTA 1125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1628 GAAGAAGCAGTAACTGCCTTAAAGAACACATCTGATTTTGTTTATTTGAAAGTGGCAAAACCCACAAGTATGTA 1701
Query 1126 TATGAATGATGGCTATGCACCACCTGATATCACCAACTCTTCTTCTCAGCCTGTTGATAACCATGTTAGCCCAT 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1702 TATGAATGATGGCTATGCACCACCTGATATCACCAACTCTTCTTCTCAGCCTGTTGATAACCATGTTAGCCCAT 1775
Query 1200 CTTCCTTCTTGGGCCAGACACCAGCATCTCCAGCCAGATACTCCCCAGTTTCTAAAGCAGTACTTGGAGATGAT 1273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1776 CTTCCTTCTTGGGCCAGACACCAGCATCTCCAGCCAGATACTCCCCAGTTTCTAAAGCAGTACTTGGAGATGAT 1849
Query 1274 GAAATTACAAGGGAACCTAGAAAAGTTGTTCTTCATCGTGGCTCAACGGGCCTTGGTTTCAACATTGTAGGAGG 1347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1850 GAAATTACAAGGGAACCTAGAAAAGTTGTTCTTCATCGTGGCTCAACGGGCCTTGGTTTCAACATTGTAGGAGG 1923
Query 1348 AGAAGATGGAGAAGGAATATTTATTTCCTTTATCTTAGCCGGAGGACCTGCTGATCTAAGTGGAGAGCTCAGAA 1421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1924 AGAAGATGGAGAAGGAATATTTATTTCCTTTATCTTAGCCGGAGGACCTGCTGATCTAAGTGGAGAGCTCAGAA 1997
Query 1422 AAGGAGATCGTATTATATCGGTAAACAGTGTTGACCTCAGAGCTGCTAGTCATGAGCAGGCAGCAGCTGCATTG 1495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1998 AAGGAGATCGTATTATATCGGTAAACAGTGTTGACCTCAGAGCTGCTAGTCATGAGCAGGCAGCAGCTGCATTG 2071
Query 1496 AAAAATGCTGGCCAGGCTGTCACAATTGTTGCACAATATCGACCTGAAGAATACAGTCGTTTTGAAGCTAAAAT 1569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2072 AAAAATGCTGGCCAGGCTGTCACAATTGTTGCACAATATCGACCTGAAGAATACAGTCGTTTTGAAGCTAAAAT 2145
Query 1570 ACATGATTTACGGGAGCAGATGATGAATAGTAGTATTAGTTCAGGGTCAGGTTCTCTTCGAACTAGCCAGAAGC 1643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2146 ACATGATTTACGGGAGCAGATGATGAATAGTAGTATTAGTTCAGGGTCAGGTTCTCTTCGAACTAGCCAGAAGC 2219
Query 1644 GATCCCTCTATGTCAGAGCCCTTTTTGATTATGACAAGACTAAAGACAGTGGGCTTCCCAGTCAGGGACTGAAC 1717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2220 GATCCCTCTATGTCAGAGCCCTTTTTGATTATGACAAGACTAAAGACAGTGGGCTTCCCAGTCAGGGACTGAAC 2293
Query 1718 TTCAAATTTGGAGATATCCTCCATGTTATTAATGCTTCTGATGATGAATGGTGGCAAGCCAGGCAGGTTACACC 1791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2294 TTCAAATTTGGAGATATCCTCCATGTTATTAATGCTTCTGATGATGAATGGTGGCAAGCCAGGCAGGTTACACC 2367
Query 1792 AGATGGTGAGAGCGATGAGGTCGGAGTGATTCCCAGTAAACGCAGAGTTGAGAAGAAAGAACGAGCCCGATTAA 1865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2368 AGATGGTGAGAGCGATGAGGTCGGAGTGATTCCCAGTAAACGCAGAGTTGAGAAGAAAGAACGAGCCCGATTAA 2441
Query 1866 AAACAGTGAAATTCAATTCTAAAACGAGAGATAAAGG------------------------------------- 1902
|||||||||||||||||||||||||||||||||||||
Sbjct 2442 AAACAGTGAAATTCAATTCTAAAACGAGAGATAAAGGGTTCCTCAGAGCCTTCAAACTTTAAGATTGAAATCAA 2515
Query 1903 -----------------------------------------------------------GCAGTCATTCAATGA 1917
|||||||||||||||
Sbjct 2516 GACAGTCTGCTTGGCTAATGAACTGTGAACTTATTAATCCTGAATTAATTATATGAAAAGCAGTCATTCAATGA 2589
Query 1918 CAAGCGTAAAAAGAACCTCTTTTCCCGAAAATTCCCCTTCTACAAGAACAAGGACCAGAGTGAGCAGGAAACAA 1991
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2590 CAAGCGTAAAAAGAACCTCTTTTCCCGAAAATTCCCCTTCTACAAGAACAAGGACCAGAGTGAGCAGGAAACAA 2663
Query 1992 GTGATGCTCACAAGTATGTATATGAATGATGGCTATGCACCACCTGATATCACCAACTGTGGTCAAGAAGAATA 2065
Sbjct 2664 -------------------------------------------------------------------------- 2663
Query 2066 CGTCTTATCTTATGAACCAGTGAATCAACAAGAAGTTAATTATACTCGACCAGTGATCATATTGGGACCTATGA 2139
Sbjct 2664 -------------------------------------------------------------------------- 2663
Query 2140 AAGACAGGATAAATGATGACTTGATCTCAGAATTTCCTGACAAATTTGGATCCTGTGTTCCTCATACAACTAGA 2213
Sbjct 2664 -------------------------------------------------------------------------- 2663
Query 2214 CCAAAACGAGATTATGAGGTAGATGGAAGAGATTATCATTTTGTGACTTCAAGAGAGCAGATGGAAAAAGATAT 2287
Sbjct 2664 -------------------------------------------------------------------------- 2663
Query 2288 CCAGGAACATAAATTCATTGAAGCTGGCCAGTATAACAATCATCTATATGGAACAAGTGTTCAGTCTGTACGAG 2361
Sbjct 2664 -------------------------------------------------------------------------- 2663
Query 2362 AAGTAGCAGAAAAGGGCAAACACTGTATCCTTGATGTGTCTGGAAATGCCATAAAGAGATTACAGATTGCACAG 2435
Sbjct 2664 -------------------------------------------------------------------------- 2663
Query 2436 CTTTACCCTATCTCCATTTTTATTAAACCCAAATCCATGGAAAATATCATGGAAATGAATAAGCGTCTAACAGA 2509
Sbjct 2664 -------------------------------------------------------------------------- 2663
Query 2510 AGAACAAGCCAGAAAAACATTTGAGAGAGCCATGAAACTGGAACAGGAGTTTACTGAACATTTCACAGCTATTG 2583
Sbjct 2664 -------------------------------------------------------------------------- 2663
Query 2584 TACAGGGGGATACGCTGGAAGACATTTACAACCAAGTGAAACAGATCATAGAAGAACAATCTGGTTCTTACATC 2657
Sbjct 2664 -------------------------------------------------------------------------- 2663
Query 2658 TGGGTTCCGGCAAAAGAAAAGCTA 2681
Sbjct 2664 ------------------------ 2663
