Nucleotide Global Alignment

Description

Query:
ccsbBroad304_14720
Subject:
NM_001033124.1
Aligned Length:
2410
Identities:
2028
Gaps:
53

Alignment

Query    1  ATGCTGCGAGGCGGACGGCGCGGGCAGCTTGGCTGGCACAGCTGGGCTGCGGGGCCGGGCAGCCTGCTGGCTTG  74
            ||||||||||||...||||.|||||||||.||||||||..||..|||.|||||||..|||||.|||.||.|||.
Sbjct    1  ATGCTGCGAGGCCAGCGGCTCGGGCAGCTGGGCTGGCATCGCCCGGCCGCGGGGCTAGGCAGTCTGATGACTTC  74

Query   75  GCTGATACTGGCATCTGCGGGCGCCGCACCCTGCCCCGATGCCTGCTGCCCCCACGGCTCCTCGGGACTGCGAT  148
            |.||||.|||||.|.|||...|||||||.||||.|.|||.|.||||||.|||...|||.|||||||.|||||.|
Sbjct   75  GTTGATGCTGGCCTGTGCCTCCGCCGCATCCTGTCGCGAGGTCTGCTGTCCCGTGGGCCCCTCGGGGCTGCGCT  148

Query  149  GCACCCGGGATGGGGCCCTGGATAGCCTCCACCACCTGCCCGGCGCAGAGAACCTGACTGAGCTCTACATCGAG  222
            |||||.|||..|||.|||||||||.|||||.|..|||||..|||||.|.|||||||||.|||||||||.|.||.
Sbjct  149  GCACCAGGGCAGGGTCCCTGGATACCCTCCGCGGCCTGCGGGGCGCCGGGAACCTGACGGAGCTCTACGTGGAA  222

Query  223  AACCAGCAGCATCTGCAGCATCTGGAGCTCCGTGATCTGAGGGGCCTGGGGGAGCTGAGAAACCTCACCATCGT  296
            |||||||||||.|||||.|...|||||.|....||.|||..|||||||||||||.||||||.|||.||||||||
Sbjct  223  AACCAGCAGCACCTGCAACGCTTGGAGTTTGAGGACCTGCAGGGCCTGGGGGAGTTGAGAAGCCTAACCATCGT  296

Query  297  GAAGAGTGGTCTCCGTTTCGTGGCGCCAGATGCCTTCCATTTCACTCCTCGGCTCAGTCGCCTGAATCTCTCCT  370
            |||||||||.|||||.||.|||||.|||||||||||||.||||||.|||||||||||||.|||||||||.||||
Sbjct  297  GAAGAGTGGCCTCCGCTTTGTGGCCCCAGATGCCTTCCGTTTCACCCCTCGGCTCAGTCACCTGAATCTGTCCT  370

Query  371  TCAACGCTCTGGAGTCTCTCTCCTGGAAAACTGTGCAGGGCCTCTCCTTACAGGAACTGGTCCTGTCGGGGAAC  444
            .|||.||..|||||||.||||||||||||||||||||||||||||||.|||||||.|||..||||||.||||||
Sbjct  371  CCAATGCGTTGGAGTCCCTCTCCTGGAAAACTGTGCAGGGCCTCTCCCTACAGGACCTGACCCTGTCAGGGAAC  444

Query  445  CCTCTGCACTGTTCTTGTGCCCTGCGCTGGCTACAGCGCTGGGAGGAGGAGGGACTGGGCGGAGTGCCTGAACA  518
            ||.|||||.|||||.|||||||||..||||||.|||||.||||||.||||.||.|||.|.||.||||.|..|||
Sbjct  445  CCACTGCATTGTTCCTGTGCCCTGTTCTGGCTCCAGCGTTGGGAGCAGGAAGGGCTGTGTGGTGTGCATACACA  518

Query  519  GAAGCTGCAGTG--TCATGGGCAAGGGCCCCTGG------------CCCACATG---CCCAATGCCAGCTGTGG  575
            ||.|||.|| ||  || ||||        |||||            ||||| ||   |.|||..||||.|||||
Sbjct  519  GACGCTTCA-TGACTC-TGGG--------CCTGGAGACCAGTTCCTCCCAC-TGGGACACAACACCAGTTGTGG  581

Query  576  TGTGCCCACGCTGAAGGTCCAGGTGCCCAATGCCTCGGTGGATGTGGGGGACGACGTGCTGCTGCGGTGCCAGG  649
            |||.|||||..|||||.|||||.|||||||||.|||.|||||.|||||.||.||||||.|.||||.||||||||
Sbjct  582  TGTACCCACAGTGAAGATCCAGATGCCCAATGACTCTGTGGAAGTGGGCGATGACGTGTTTCTGCAGTGCCAGG  655

Query  650  TGGAGGGGCGGGGCCTGGAGCAGGCCGGCTGGATCCTCACAGAGCTGGAGCAGTCAGCCACGGTGATGAAATCT  723
            |||||||||.||.|||..|||||||.|.|||||||||||||||||||||...|.|||||||.||||.|||||.|
Sbjct  656  TGGAGGGGCTGGCCCTACAGCAGGCTGACTGGATCCTCACAGAGCTGGAAGGGGCAGCCACCGTGAAGAAATTT  729

Query  724  GGGGGTCTGCCATCCCTGGGGCTGACCCTGGCCAATGTCACCAGTGACCTCAACAGGAAGAACGTGACGTGCTG  797
            ||.|.||||||||||||||||||||..||||.|||||||||||||||.|||||||.||||||.|||||||||||
Sbjct  730  GGAGATCTGCCATCCCTGGGGCTGATTCTGGTCAATGTCACCAGTGATCTCAACAAGAAGAATGTGACGTGCTG  803

Query  798  GGCAGAGAACGATGTGGGCCGGGCAGAGGTCTCTGTTCAGGTCAACGTCTCCTTCCCGGCCAGTGTGCAGCTGC  871
            |||||||||.||||||||||||||.|||||||||||.||.||||.||||||||||||.|||||||||||.|||.
Sbjct  804  GGCAGAGAATGATGTGGGCCGGGCCGAGGTCTCTGTCCAAGTCAGCGTCTCCTTCCCAGCCAGTGTGCACCTGG  877

Query  872  ACACGGCGGTGGAGATGCACCACTGGTGCATCCCCTTCTCTGTGGATGGGCAGCCGGCACCGTCTCTGCGCTGG  945
            .|...|||||||||..|||.||.|||||||||||||||||.|||||.||||||||.||||||||||||||||||
Sbjct  878  GCCTAGCGGTGGAGCAGCATCATTGGTGCATCCCCTTCTCGGTGGACGGGCAGCCAGCACCGTCTCTGCGCTGG  951

Query  946  CTCTTCAATGGCTCCGTGCTCAATGAGACCAGCTTCATCTTCACTGAGTTCCTGGAGCCGGCAG----CCAATG  1015
            .|.|||||.|||||.||||||||.||||||||.||||||||||||.|||||.|||||.|.|| |    |.||||
Sbjct  952  TTGTTCAACGGCTCTGTGCTCAACGAGACCAGTTTCATCTTCACTCAGTTCTTGGAGTCTGC-GCTGACTAATG  1024

Query 1016  AGACCGTGCGGCACGGGTGTCTGCGCCTCAACCAGCCCACCCACGTCAACAACGGCAACTACACGCTGCTGGCT  1089
            |||||.||||||||||.||.|||||||||||.||||||||.||.|||||||||||.||||||||.||||||||.
Sbjct 1025  AGACCATGCGGCACGGCTGCCTGCGCCTCAATCAGCCCACGCATGTCAACAACGGGAACTACACCCTGCTGGCG  1098

Query 1090  GCCAACCCCTTCGGCCAGGCCTCCGCCTCCATCATGGCTGCCTTCATGGACAACCCTTTCGAGTTCAACCCCGA  1163
            ||||||||||.|||||||||..||||||||.||||||||||.||.||||||||||||||.|||||||||||.||
Sbjct 1099  GCCAACCCCTACGGCCAGGCTGCCGCCTCCGTCATGGCTGCTTTTATGGACAACCCTTTTGAGTTCAACCCTGA  1172

Query 1164  GGACCCCATCCCT------------------GACACTAACAGCACATCTGGAGACCCGGTGGAGAAGAAGGACG  1219
            |||||||||||||                  |||..||||||||||||..|||||||.|||||||||||.||.|
Sbjct 1173  GGACCCCATCCCTGTCTCCTTCTCGCCAGTGGACGGTAACAGCACATCAAGAGACCCAGTGGAGAAGAAAGATG  1246

Query 1220  AAACACCTTTTGGGGTCTCGGTGGCTGTGGGCCTGGCCGTCTTTGCCTGCCTCTTCCTTTCTACGCTGCTCCTT  1293
            ||||.||||||||||||||.||||||||||||||.|||||||.||||..|||||||||||||.|.||.||.|||
Sbjct 1247  AAACCCCTTTTGGGGTCTCTGTGGCTGTGGGCCTAGCCGTCTCTGCCGCCCTCTTCCTTTCTGCCCTCCTTCTT  1320

Query 1294  GTGCTCAACAAATGTGGACGGAGAAACAAGTTTGGGATCAACCGCCCGGCTGTGCTGGCTCCAGAGGATGGGCT  1367
            |||||||||||||||||||.|||.|.|||.|||||||||||||||||.|||||..|.|||||||||||||||||
Sbjct 1321  GTGCTCAACAAATGTGGACAGAGGAGCAAATTTGGGATCAACCGCCCTGCTGTATTAGCTCCAGAGGATGGGCT  1394

Query 1368  GGCCATGTCCCTGCATTTCATGACATTGGGTGGCAGCTCCCTGTCCCCCACCGAGGGCAAAGGCTCTGGGCTCC  1441
            ||||||||||||.||.|||||||||.||||||||||.||.||.|||||.||.||||||||||||||.||.||||
Sbjct 1395  GGCCATGTCCCTACACTTCATGACACTGGGTGGCAGTTCTCTTTCCCCTACTGAGGGCAAAGGCTCCGGACTCC  1468

Query 1442  AAGGCCACATCATCGAGAACCCACAATACTTCAGTGATGCCTGTGTTCACCACATCAAGCGCCGGGACATCGTG  1515
            |.|||||||||||.|||||||||||.||||||||||||.|||||||.||.|||||||||||||.|||||||.|.
Sbjct 1469  AGGGCCACATCATGGAGAACCCACAGTACTTCAGTGATACCTGTGTCCATCACATCAAGCGCCAGGACATCATT  1542

Query 1516  CTCAAGTGGGAGCTGGGGGAGGGCGCCTTTGGGAAGGTCTTCCTTGCTGAGTGCCACAACCTCCTGCCTGAGCA  1589
            ||||||||||||||.||||||||.||||||||.||||||||.||.|||||||||.|||||||.|||..|||.||
Sbjct 1543  CTCAAGTGGGAGCTAGGGGAGGGAGCCTTTGGAAAGGTCTTTCTCGCTGAGTGCTACAACCTTCTGAATGATCA  1616

Query 1590  GGACAAGATGCTGGTGGCTGTCAAGGCACTGAAGGAGGCGTCCGAGAGTGCTCGGCAGGACTTCCAGCGTGAGG  1663
            ||||||||||||.||||||||||||||||||||||||||.|||||||.|||||||||||||||.||||||||||
Sbjct 1617  GGACAAGATGCTCGTGGCTGTCAAGGCACTGAAGGAGGCATCCGAGAATGCTCGGCAGGACTTTCAGCGTGAGG  1690

Query 1664  CTGAGCTGCTCACCATGCTGCAGCACCAGCACATCGTGCGCTTCTTCGGCGTCTGCACCGAGGGCCGCCCCCTG  1737
            |.|||||||||||||||||.||||||||||||||||||||||||||.||.||||||||||||||..||||..||
Sbjct 1691  CCGAGCTGCTCACCATGCTACAGCACCAGCACATCGTGCGCTTCTTTGGAGTCTGCACCGAGGGTGGCCCGTTG  1764

Query 1738  CTCATGGTCTTTGAGTATATGCGGCACGGGGACCTCAACCGCTTCCTCCGATCCCATGGACCTGATGCCAAGCT  1811
            |||||||||||||||||.|||||.|||||||||||||||||.||||||||.|||||.|||||||||||.|||||
Sbjct 1765  CTCATGGTCTTTGAGTACATGCGCCACGGGGACCTCAACCGTTTCCTCCGGTCCCACGGACCTGATGCAAAGCT  1838

Query 1812  GCTGGCTGGTGGGGAGGATGTGGCTCCAGGCCCCCTGGGTCTGGGGCAGCTGCTGGCCGTGGCTAGCCAGGTCG  1885
            ||||||||||||.||||||||||||||.||.||.|||||.||.||||||||.|||||.||||||||||||||.|
Sbjct 1839  GCTGGCTGGTGGTGAGGATGTGGCTCCTGGTCCTCTGGGCCTTGGGCAGCTTCTGGCTGTGGCTAGCCAGGTGG  1912

Query 1886  CTGCGGGGATGGTGTACCTGGCGGGTCTGCATTTTGTGCACCGGGACCTGGCCACACGCAACTGTCTAGTGGGC  1959
            ||||.||.|||||.||.||.||..|.|||||.||||||||||||||.||||||||||||||||||||.|||||.
Sbjct 1913  CTGCTGGTATGGTATATCTAGCCAGCCTGCACTTTGTGCACCGGGATCTGGCCACACGCAACTGTCTGGTGGGT  1986

Query 1960  CAGGGACTGGTGGTCAAGATTGGTGATTTTGGCATGAGCAGGGATATCTACAGCACCGACTATTACCGTGTGGG  2033
            ||||||||.|||||.||||||||.||.||||||||||||||.||.|||||.|||||.|||||||||||.|||||
Sbjct 1987  CAGGGACTAGTGGTGAAGATTGGAGACTTTGGCATGAGCAGAGACATCTATAGCACAGACTATTACCGAGTGGG  2060

Query 2034  AGGCCGCACCATGCTGCCCATTCGCTGGATGCCGCCCGAGAGCATCCTGTACCGTAAGTTCACCACCGAGAGCG  2107
            |||.||.||||||||||||||.|||||||||||.||||||||||||||.|||||.|||||||.|||||||||||
Sbjct 2061  AGGTCGGACCATGCTGCCCATCCGCTGGATGCCACCCGAGAGCATCCTCTACCGCAAGTTCAGCACCGAGAGCG  2134

Query 2108  ACGTGTGGAGCTTCGGCGTGGTGCTCTGGGAGATCTTCACCTACGGCAAGCAGCCCTGGTACCAGCTCTCCAAC  2181
            |.|||||||||||.||.||||||||||||||||||||||||||.||.|||||||||||||||||||||||||||
Sbjct 2135  ATGTGTGGAGCTTTGGGGTGGTGCTCTGGGAGATCTTCACCTATGGAAAGCAGCCCTGGTACCAGCTCTCCAAC  2208

Query 2182  ACGGAGGCAATCGACTGCATCACGCAGGGACGTGAGTTGGAGCGGCCACGTGCCTGCCCACCAGAGGTCTACGC  2255
            ||.|||||.|||||.||.|||||||||||.||.|||.||||||||||.||.||||||||.||.||.||||||||
Sbjct 2209  ACTGAGGCGATCGAGTGTATCACGCAGGGCCGGGAGCTGGAGCGGCCGCGCGCCTGCCCTCCTGATGTCTACGC  2282

Query 2256  CATCATGCGGGGCTGCTGGCAGCGGGAGCCCCAGCAACGCCACAGCATCAAGGATGTGCACGCCCGGCTGCAAG  2329
            |||||||||.||||||||||||||.||.||.||||||||||.||||||.||||||||||||||.||.|||||.|
Sbjct 2283  CATCATGCGAGGCTGCTGGCAGCGAGAACCGCAGCAACGCCTCAGCATGAAGGATGTGCACGCGCGTCTGCAGG  2356

Query 2330  CCCTGGCCCAGGCACC-TCCTGTCTACCTGGATGTCCTGGGC  2370
            |||||||.|||||.|| .||.|| ||||||||.||.||||||
Sbjct 2357  CCCTGGCACAGGCGCCACCCAGT-TACCTGGACGTTCTGGGC  2397

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.