Nucleotide Global Alignment

Description

• Query: ccsbBroad304_14722
• Subject: XR_002957645.1
• Aligned Length: 3237
• Identities: 1659
• Gaps: 1498

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GGAGGGAGCCGAGGAAGACGCTCCGATAACCCGTGCGTTTCGTAAGGCTCGGAGCACTTGTACATTTCTGCAGC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CGCGCGGCGAGCCATTCGCGGCGGCTGCTGCAGCTCCTACTGCATCTTCCTTCTCTTCCTTTCCTCGGGCTCCG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GGTGTGTGTATGTGTGAGAGTGAGTGTGTGTGTTTTGCAGGTGCGTGGTGTGTCCGTTTTAATTCTGCCCAGTA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GGTGGGACTTGGTGACTTTAGCACCATTTTTTCCTTTTCCTTTTTTTTTTTTGCCTCCCCACCGTCTGTTGCAA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CCCTGCAAAGTCTCGGAGTCGGAGAGCGCGCCTCGCTTCCAGAGCCCCCGGACCCGGCGAGTCAGCGATCGCCG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  AGCCGGCCACCATGCCCGGCAGACCGCGCCACTAGGCGCTCCTCGCGGCTCCCACCCGGCGGCGGCGGCGGCGG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CGGCGGCGTCCGCGATGGTTTCAGACGCTGAAGGATTTTGCATCTGATCGCTCGGCGTTTCAAAGGCAGAGGCC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CCCCCTCCCCCTTCCCCCCTCCCTCGCCGTCTTTGTTTCCTTCCCCCCCTGCTCTCCCCACTCCCCCCACCCCA  592

Query    1  -----------------------------------------------ATGGATGTCTCTCTTTGCCCAGCCAAG  27
                                                           |||||||||||||||||||||||||||
Sbjct  593  CCCCCCTCTCCTCTCCTCCTCCTCTTTTTTAGAAGCAGCGATCGGAGATGGATGTCTCTCTTTGCCCAGCCAAG  666

Query   28  TGTAGTTTCTGGCGGATTTTCTTGCTGGGAAGCGTCTGGCTGGACTATGTGGGCTCCGTGCTGGCTTGCCCTGC  101
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  TGTAGTTTCTGGCGGATTTTCTTGCTGGGAAGCGTCTGGCTGGACTATGTGGGCTCCGTGCTGGCTTGCCCTGC  740

Query  102  AAATTGTGTCTGCAGCAAGACTGAGATCAATTGCCGGCGGCCGGACGATGGGAACCTCTTCCCCCTCCTGGAAG  175
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  AAATTGTGTCTGCAGCAAGACTGAGATCAATTGCCGGCGGCCGGACGATGGGAACCTCTTCCCCCTCCTGGAAG  814

Query  176  GGCAGGATTCAGGGAACAGCAATGGGAACGCCAGTATCAACATCACGGACATCTCAAGGAATATCACTTCCATA  249
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  GGCAGGATTCAGGGAACAGCAATGGGAACGCCAGTATCAACATCACGGACATCTCAAGGAATATCACTTCCATA  888

Query  250  CACATAGAGAACTGGCGCAGTCTTCACACGCTCAACGCCGTGGACATGGAGCTCTACACCGGACTTCAAAAGCT  323
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  CACATAGAGAACTGGCGCAGTCTTCACACGCTCAACGCCGTGGACATGGAGCTCTACACCGGACTTCAAAAGCT  962

Query  324  GACCATCAAGAACTCAGGACTTCGGAGCATTCAGCCCAGAGCCTTTGCCAAGAACCCCCATTTGCGTTATATAA  397
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  GACCATCAAGAACTCAGGACTTCGGAGCATTCAGCCCAGAGCCTTTGCCAAGAACCCCCATTTGCGTTATATAA  1036

Query  398  ACCTGTCAAGTAACCGGCTCACCACACTCTCGTGGCAGCTCTTCCAGACGCTGAGTCTTCGGGAATTGCAGTTG  471
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  ACCTGTCAAGTAACCGGCTCACCACACTCTCGTGGCAGCTCTTCCAGACGCTGAGTCTTCGGGAATTGCAGTTG  1110

Query  472  GAGCAGAACTTTTTCAACTGCAGCTGTGACATCCGCTGGATGCAGCTCTGGCAGGAGCAGGGGGAGGCCAAGCT  545
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  GAGCAGAACTTTTTCAACTGCAGCTGTGACATCCGCTGGATGCAGCTCTGGCAGGAGCAGGGGGAGGCCAAGCT  1184

Query  546  CAACAGCCAGAACCTCTACTGCATCAACGCTGATGGCTCCCAGCTTCCTCTCTTCCGCATGAACATCAGTCAGT  619
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  CAACAGCCAGAACCTCTACTGCATCAACGCTGATGGCTCCCAGCTTCCTCTCTTCCGCATGAACATCAGTCAGT  1258

Query  620  GTGACCTTCCTGAGATCAGCGTGAGCCACGTCAACCTGACCGTACGAGAGGGTGACAATGCTGTTATCACTTGC  693
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||
Sbjct 1259  GTGACCTTCCTGAGATCAGCGTGAGCCACGTCAACCTGACCGTACGAGAGGGTGACAACGCTGTTATCACTTGC  1332

Query  694  AATGGCTCTGGATCACCCCTTCCTGATGTGGACTGGATAGTCACTGGGCTGCAGTCCATCAACACTCACCAGAC  767
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  AATGGCTCTGGATCACCCCTTCCTGATGTGGACTGGATAGTCACTGGGCTGCAGTCCATCAACACTCACCAGAC  1406

Query  768  CAATCTGAACTGGACCAATGTTCATGCCATCAACTTGACGCTGGTGAATGTGACGAGTGAGGACAATGGCTTCA  841
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  CAATCTGAACTGGACCAATGTTCATGCCATCAACTTGACGCTGGTGAATGTGACGAGTGAGGACAATGGCTTCA  1480

Query  842  CCCTGACGTGCATTGCAGAGAACGTGGTGGGCATGAGCAATGCCAGTGTTGCCCTCACTGTCTACTATCCCCCA  915
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  CCCTGACGTGCATTGCAGAGAACGTGGTGGGCATGAGCAATGCCAGTGTTGCCCTCACTGTCTACTATCCCCCA  1554

Query  916  CGTGTGGTGAGCCTGGAGGAGCCTGAGCTGCGCCTGGAGCACTGCATCGAGTTTGTGGTGCGTGGCAACCCCCC  989
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  CGTGTGGTGAGCCTGGAGGAGCCTGAGCTGCGCCTGGAGCACTGCATCGAGTTTGTGGTGCGTGGCAACCCCCC  1628

Query  990  ACCAACGCTGCACTGGCTGCACAATGGGCAGCCTCTGCGGGAGTCCAAGATCATCCATGTGGAATACTACCAAG  1063
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  ACCAACGCTGCACTGGCTGCACAATGGGCAGCCTCTGCGGGAGTCCAAGATCATCCATGTGGAATACTACCAAG  1702

Query 1064  AGGGAGAGATTTCCGAGGGCTGCCTGCTCTTCAACAAGCCCACCCACTACAACAATGGCAACTATACCCTCATT  1137
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  AGGGAGAGATTTCCGAGGGCTGCCTGCTCTTCAACAAGCCCACCCACTACAACAATGGCAACTATACCCTCATT  1776

Query 1138  GCCAAAAACCCACTGGGCACAGCCAACCAGACCATCAATGGCCACTTCCTCAAGGAGCCCTTTCCAGAGAGCAC  1211
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
Sbjct 1777  GCCAAAAACCCACTGGGCACAGCCAACCAGACCATCAATGGCCACTTCCTCAAGGAGCCCTTTCCAG-------  1843

Query 1212  GGATAACTTTATCTTGTTTGACGAAGTGAGTCCCACACCTCCTATCACTGTGACCCACAAACCAGAAGAAGACA  1285
                             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1844  -----------------TTGACGAAGTGAGTCCCACACCTCCTATCACTGTGACCCACAAACCAGAAGAAGACA  1900

Query 1286  CTTTTGGGGTATCCATAGCAGTTGGACTTGCTGCTTTTGCCTGTGTCCTGTTGGTGGTTCTCTTCGTCATGATC  1359
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1901  CTTTTGGGGTATCCATAGCAGTTGGACTTGCTGCTTTTGCCTGTGTCCTGTTGGTGGTTCTCTTCGTCATGATC  1974

Query 1360  AACAAATATGGTCGACGGTCCAAATTTGGAATGAAGG--GTCCCGTG-----------GCTGTCA---TCAGTG  1417
            |||||||||||||||||||||||||||||||||||||  |..||.||           .||..||   |||||.
Sbjct 1975  AACAAATATGGTCGACGGTCCAAATTTGGAATGAAGGCTGGACCATGTTTTCCTTTTCCCTTCCAAAGTCAGTC  2048

Query 1418  GTGAGGAGGACTCAGCCAGCCCACTGCACCACATCAACC----ACGGCATCACCACGCCCTCGTCACTGGATGC  1487
            |                       |||.||||||         |||||.|             ||.||||.|  
Sbjct 2049  G-----------------------TGCTCCACAT-----TTTGACGGCTT-------------TCCCTGGTT--  2079

Query 1488  CGGGCCCGACACTGTG--GTCATTGGCA---TGACTCGCATCCCTGTC-ATTGAGAACC--CCCAGTACTTCCG  1553
                       |||||  .||.|| .||   || ||..|||  ||.|| |.|.|.||.|  ||||.|||     
Sbjct 2080  -----------CTGTGAATTCCTT-CCAAGTTG-CTGCCAT--CTTTCTACTAATAAGCTGCCCAATAC-----  2133

Query 1554  TCAGGGACACAACTGCCACAAGCCGGACACGTATGTGCAGCACATTAAGAGGAGAGACATCGTGCTGAAGCGAG  1627
                       ||||     ..||||.|||.|...||.||| |..|.|.||      |.||             
Sbjct 2134  -----------ACTG-----TACCGGTCACCTCCCTGGAGC-CTCTCACAG------CCTC-------------  2171

Query 1628  AACTGGGTGAGGGAGCCTTTGGAAAGGTCTTC----------CTGG-----CCGAGTGC-TACA-ACCTCAGCC  1684
              ||||.|||                 |||||          ||||     ||.|| || |||| |||      
Sbjct 2172  --CTGGATGA-----------------TCTTCAGCCTCTATTCTGGAAAAACCAAG-GCTTACACACC------  2219

Query 1685  CGACCAAGGACAAGATGCTTGTGGCTGTGAAGGCCCTGAAGGATCCCACCCTGGCTGCCCGGAAGGATTTCCAG  1758
              |||.|..|||  |||||     ||.|.|  ||||||                 |||         |.|||| 
Sbjct 2220  --ACCCACTACA--ATGCT-----CTTTCA--GCCCTG-----------------TGC---------TCTCCA-  2255

Query 1759  AGGGAGGCC--GAGCTGCTCACCAACCTGCAGCATGAGCACA--TTGTCAAGTTCTATGGAGTGTGCGGCGATG  1828
              ||.||||  | ||||.|                    |||  |||||  |||| ||                
Sbjct 2256  --GGTGGCCTTG-GCTGTT--------------------ACATCTTGTC--GTTC-AT----------------  2287

Query 1829  GGGAC-CCCCTCATCATGGTCTTTGAATACATGAAGCATGG-------AGACCTGAATAAGTTCCTCAGGGCCC  1894
                | ||||| |.||   .|||||.| |.||.||| ||.|       |||..|.||.|.||| |||..|||| 
Sbjct 2288  ----CACCCCT-ACCA---CCTTTGCA-AGATTAAG-ATTGTTAATAAAGATGTTAACACGTT-CTCTAGGCC-  2349

Query 1895  ATGGGCCAGATGCAATGATC-CTTGTGGATGGACAGCCACGCCA-----GGCCAAGGGTGAGCTGGGGCTCTCC  1962
                              || ||         .||.||.|||||     ||||   .|..|.|||||||.||| 
Sbjct 2350  ------------------TCACT---------CCAACCTCGCCATAGCTGGCC---CGCTATCTGGGGCCCTC-  2392

Query 1963  CAAATGCTC--------------CACATTGCCAGTCAGATCGCCTCGGGTATGGTGTACCTGGCCTCC----CA  2018
                |||||              ||..||..|| |.||.||        |.|.||.||||  |.||||    .|
Sbjct 2393  ----TGCTCAAGAAAAGAAACTGCATTTTATCA-TAAGTTC--------TGTTGTTTACC--GTCTCCTGGTGA  2451

Query 2019  GCACTTTGTGCACCGAGACCTGGCCACCAGGAACTGCCTGGTTGGAGCGAATCTGCTAGTGAAGATTGGGGACT  2092
            |.|.||      ||                                                            
Sbjct 2452  GTATTT------CC------------------------------------------------------------  2459

Query 2093  TCGGCATGTCCAGAGATGTCTACAGCACGGATTATTACAGGCTCTTTAATCCATCTGGAAATGATTTTTGTATA  2166
                                                                                      
Sbjct 2460  --------------------------------------------------------------------------  2459

Query 2167  TGGTGTGAGGTGGGAGGACACACCATGCTCCCCATTCGCTGGATGCCTCCTGAAAGCATCATGTACCGGAAGTT  2240
                                                                                      
Sbjct 2460  --------------------------------------------------------------------------  2459

Query 2241  CACTACAGAGAGTGATGTATGGAGCTTCGGGGTGATCCTCTGGGAGATCTTCACCTATGGAAAGCAGCCATGGT  2314
                                                                                      
Sbjct 2460  --------------------------------------------------------------------------  2459

Query 2315  TCCAACTCTCAAACACGGAGGTCATTGAGTGCATTACCCAAGGTCGTGTTTTGGAGCGGCCCCGAGTCTGCCCC  2388
                                                                                      
Sbjct 2460  --------------------------------------------------------------------------  2459

Query 2389  AAAGAGGTGTACGATGTCATGCTGGGGTGCTGGCAGAGGGAACCACAGCAGCGGTTGAACATCAAGGAGATCTA  2462
                                                                                      
Sbjct 2460  --------------------------------------------------------------------------  2459

Query 2463  CAAAATCCTCCATGCTTTGGGGAAGGCCACCCCAATCTACCTGGACATTCTTGGC  2517
                                                                   
Sbjct 2460  -------------------------------------------------------  2459