Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_14763
- Subject:
- NM_001077495.2
- Aligned Length:
- 2189
- Identities:
- 1201
- Gaps:
- 844
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGAGTGCAGAGGGCTACCAGTACAGAGCACTGTACGACTACAAGAAGGAGCGAGAGGAAGACATTGACCTACA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CCTGGGGGACATACTGACTGTGAATAAAGGCTCCTTAGTGGCACTTGGATTCAGTGATGGCCAGGAAGCCCGGC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CTGAAGATATTGGCTGGTTAAATGGCTACAATGAAACCACTGGGGAGAGGGGAGACTTTCCAGGAACTTACGTT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GAATACATTGGAAGGAAAAGAATTTCACCCCCTACTCCCAAGCCTCGGCCCCCTCGACCGCTTCCTGTTGCTCC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GGGTTCTTCAAAAACTGAAGCTGACACGGAGCAGCAAGCGTTGCCCCTTCCTGACCTGGCCGAGCAGTTTGCCC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CTCCTGATGTTGCCCCGCCTCTCCTTATAAAGCTCCTGGAAGCCATTGAGAAGAAAGGACTGGAATGTTCGACT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CTATACAGAACACAAAGCTCCAGCAACCCTGCAGAATTACGACAGCTTCTTGATTGTGATGCCGCGTCAGTGGA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CTTGGAGATGATCGACGTACACGTCTTAGCAGATGCTTTCAAACGCTATCTCGCCGACTTACCAAATCCTGTCA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TTCCTGTAGCTGTTTACAATGAGATGATGTCTTTAGCCCAAGAACTACAGAGCCCTGAAGACTGCATCCAGCTG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TTGAAGAAGCTCATTAGATTGCCTAATATACCTCATCAGTGTTGGCTTACGCTTCAGTATTTGCTCAAGCATTT 740
Query 1 -------------------------ATGTACAATACTGTTTGGAATATGGAAGA--CCT-----GGATTT---- 38
| ||.||..|||| .|||.|||| ||| .|||||
Sbjct 741 TTTCAAGCTCTCTCAAGCCTCCAGCA-----AAAACCTTTTG---AATGCAAGAGTCCTCTCTGAGATTTTCAG 806
Query 39 -------------AGAATAT------GCCAAGACAGAT---------------ATAAATTGTGGC-ACAGACTT 77
|| ||.| ||||...|.||| ||||| .|| |.|||
Sbjct 807 CCCCGTGCTTTTCAG-ATTTCCAGCCGCCAGCTCTGATAATACTGAACACCTCATAAA----AGCGATAGA--- 872
Query 78 GATGTTTTAT---ATAGAAATGGA-----------CC--CACCAGCACTGCCTCCTAAACCACCAAAACCTACT 135
||| |||.|| |..|.|||||| || |||||||||||||.||.||||||||.||.||.|||
Sbjct 873 GAT-TTTAATCTCAACGGAATGGAATGAGAGACAGCCAGCACCAGCACTGCCCCCCAAACCACCCAAGCCCACT 945
Query 136 ACTGTAGCCAACAACGGTATGAATAACAATATGTCCTTACAAGATGCTGAATGGTACTGGGGAGATATCTCGAG 209
|||||||||||||||.|.|||||.||||||||||||||.||.|||||||||||||||||||||||.|||||.||
Sbjct 946 ACTGTAGCCAACAACAGCATGAACAACAATATGTCCTTGCAGGATGCTGAATGGTACTGGGGAGACATCTCAAG 1019
Query 210 GGAAGAAGTGAATGAAAAACTTCGAGATACAGCAGACGGGACCTTTTTGGTACGAGATGCGTCTACTAAAATGC 283
|||||||||||||||||||||.|||||.||.||.||.||||||||||||||||||||.||.|||||||||||||
Sbjct 1020 GGAAGAAGTGAATGAAAAACTCCGAGACACTGCTGATGGGACCTTTTTGGTACGAGACGCATCTACTAAAATGC 1093
Query 284 ATGGTGATTATACTCTTACACTAAGGAAAGGGGGAAATAACAAATTAATCAAAATATTTCATCGAGATGGGAAA 357
|.||.|||||.||||||||||||||||||||.|||||||||||||||||||||||.|||||.||.|||||.|||
Sbjct 1094 ACGGCGATTACACTCTTACACTAAGGAAAGGAGGAAATAACAAATTAATCAAAATCTTTCACCGTGATGGAAAA 1167
Query 358 TATGGCTTCTCTGACCCATTAACCTTCAGTTCTGTGGTTGAATTAATAAACCACTACCGGAATGAATCTCTAGC 431
||||||||||||||.|||||||||||||..|||||||||||.|||||||||||||||||||||||.|||.||||
Sbjct 1168 TATGGCTTCTCTGATCCATTAACCTTCAACTCTGTGGTTGAGTTAATAAACCACTACCGGAATGAGTCTTTAGC 1241
Query 432 TCAGTATAATCCCAAATTGGATGTGAAATTACTTTATCCAGTATCCAAATACCAACAGGATCAAGTTGTCAAAG 505
||||||.||.|||||..||||||||||.||.||.||.|||||.|||||||||||.|||||||||||||||||||
Sbjct 1242 TCAGTACAACCCCAAGCTGGATGTGAAGTTGCTCTACCCAGTGTCCAAATACCAGCAGGATCAAGTTGTCAAAG 1315
Query 506 AAGATAATATTGAAGCTGTAGGGAAAAAATTACATAAATATAACACTCAGTTTCAAGAAAAAAGTCGAGAATAT 579
|||||||||||||||||||||||||||||||||||.|||||||.|||||.|||||||||||||||||.||||||
Sbjct 1316 AAGATAATATTGAAGCTGTAGGGAAAAAATTACATGAATATAATACTCAATTTCAAGAAAAAAGTCGGGAATAT 1389
Query 580 GATAGATTATATGAAGAATATACCCGCACATCCCAGGAAATCCAAATGAAAAGGACAGCTATTGAAGCATTTAA 653
||||||||||||||.||.||.|||||.||.|||||||||||||||||||||||.||.|||||.|||||||||||
Sbjct 1390 GATAGATTATATGAGGAGTACACCCGTACTTCCCAGGAAATCCAAATGAAAAGAACGGCTATCGAAGCATTTAA 1463
Query 654 TGAAACCATAAAAATATTTGAAGAACAGTGCCAGACCCAAGAGCGGTACAGCAAAGAATACATAGAAAAGTTTA 727
|||||||||||||||||||||||||||.|||||.|||||.||||||||||||||||||||||||||.|||||||
Sbjct 1464 TGAAACCATAAAAATATTTGAAGAACAATGCCAAACCCAGGAGCGGTACAGCAAAGAATACATAGAGAAGTTTA 1537
Query 728 AACGTGAAGGCAATGAGAAAGAAATACAAAGGATTATGCATAATTATGATAAGTTGAAGTCTCGAATCAGTGAA 801
||||.||||||||.|||||||||||.|||||||||||||||||..||||||||.|||||||.||.||||||||.
Sbjct 1538 AACGCGAAGGCAACGAGAAAGAAATTCAAAGGATTATGCATAACCATGATAAGCTGAAGTCGCGTATCAGTGAG 1611
Query 802 ATTATTGACAGTAGAAGAAGATTGGAAGAAGACTTGAAGAAGCAGGCAGCTGAGTATCGAGAAATTGACAAACG 875
||.|||||||||||.||.||.|||||||||||||||||||||||||||||||||||.|||||.||.||||||||
Sbjct 1612 ATCATTGACAGTAGGAGGAGGTTGGAAGAAGACTTGAAGAAGCAGGCAGCTGAGTACCGAGAGATCGACAAACG 1685
Query 876 TATGAACAGCATTAAACCAGACCTTATCCAGCTGAGAAAGACGAGAGACCAATACTTGATGTGGTTGACTCAAA 949
.||||||||.|||||.||.|||||.||||||.||||||||||.|||||||||||||||||||||.||||.||.|
Sbjct 1686 CATGAACAGTATTAAGCCGGACCTCATCCAGTTGAGAAAGACAAGAGACCAATACTTGATGTGGCTGACGCAGA 1759
Query 950 AAGGTGTTCGGCAAAAGAAGTTGAACGAGTGGTTGGGCAATGAAAACACTGAAGACCAATATTCACTGGTGGAA 1023
|||||||.|||||.||||||.|||||||||||.||||.||||||||.||.|||||.|||||.||.|||||.|||
Sbjct 1760 AAGGTGTGCGGCAGAAGAAGCTGAACGAGTGGCTGGGGAATGAAAATACCGAAGATCAATACTCCCTGGTAGAA 1833
Query 1024 GATGATGAAGATTTGCCCCATCATGATGAGAAGACATGGAATGTTGGAAGCAGCAACCGAAACAAAGCTGAAAA 1097
||||||||.|||||||||||.|||||.||||||||.||||||||.||.||||||||||||||||||||.||.||
Sbjct 1834 GATGATGAGGATTTGCCCCACCATGACGAGAAGACGTGGAATGTCGGGAGCAGCAACCGAAACAAAGCGGAGAA 1907
Query 1098 CCTGTTGCGAGGGAAGCGAGATGGCACTTTTCTTGTCCGGGAGAGCAGTAAACAGGGCTGCTATGCCTGCTCTG 1171
|||.|||||||||||||||||.||||||||.||||||||||||||||||||.||||||||||||||||||||.|
Sbjct 1908 CCTATTGCGAGGGAAGCGAGACGGCACTTTCCTTGTCCGGGAGAGCAGTAAGCAGGGCTGCTATGCCTGCTCCG 1981
Query 1172 TAGTGGTGGACGGCGAAGTAAAGCATTGTGTCATAAACAAAACAGCAACTGGCTATGGCTTTGCCGAGCCCTAT 1245
|||||||.|||||||||||.||||||||.|||||.|||||.||.||.||.|||||||||||||||||||||||.
Sbjct 1982 TAGTGGTAGACGGCGAAGTCAAGCATTGCGTCATTAACAAGACTGCCACCGGCTATGGCTTTGCCGAGCCCTAC 2055
Query 1246 AACTTGTACAGCTCTCTGAAAGAACTGGTGCTACATTACCAACACACCTCCCTTGTGCAGCACAACGACTCCCT 1319
|||.||||||||||.|||||.||.||||||||||||||.||||||||||||||.|||||||||||.||||||||
Sbjct 2056 AACCTGTACAGCTCCCTGAAGGAGCTGGTGCTACATTATCAACACACCTCCCTCGTGCAGCACAATGACTCCCT 2129
Query 1320 CAATGTCACACTAGCCTACCCAGTATATGCACAGCAGAGGCGA 1362
|||||||||||||||.|||||||||||||||||.|||||||||
Sbjct 2130 CAATGTCACACTAGCATACCCAGTATATGCACAACAGAGGCGA 2172
