Nucleotide Global Alignment

Description

• Query: ccsbBroad304_14833
• Subject: NM_001369674.1
• Aligned Length: 1369
• Identities: 635
• Gaps: 728

Alignment

Query    1  ATGAGGCGACGAAGGAGGCGGGACGGCTTTTACCCAGCCCCGGACTTCCGAGACAGGGAAGCTGAGGACATGGC  74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGAGGCGACGAAGGAGGCGGGACGGCTTTTACCCAGCCCCGGACTTCCGAGACAGGGAAGCTGAGGACATGGC  74

Query   75  AGGAGTGTTTGACATAGACCTGGACCAGCCAGAGGACGCGGGCTCTGAGGATGAGCTGGAGGAGGGGGGTCAGT  148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  AGGAGTGTTTGACATAGACCTGGACCAGCCAGAGGACGCGGGCTCTGAGGATGAGCTGGAGGAGGGGGGTCAGT  148

Query  149  TAAATGAAAGCATGGACCATGGGGGAGTTGGACCATATGAACTTGGCATGGAACATTGTGAGAAATTTGAAATC  222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  TAAATGAAAGCATGGACCATGGGGGAGTTGGACCATATGAACTTGGCATGGAACATTGTGAGAAATTTGAAATC  222

Query  223  TCAGAAACTAGTGTGAACAGAGGGCCAGAAAAAATCAGACCAGAATGTTTTGAGCTACTTCGGGTACTTGGTAA  296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  TCAGAAACTAGTGTGAACAGAGGGCCAGAAAAAATCAGACCAGAATGTTTTGAGCTACTTCGGGTACTTGGTAA  296

Query  297  AGGGGGCTATGGAAAGGTTTTTCAAGTACGAAAAGTAACAGGAGCAAATACTGGGAAAATATTTGCCATGAAGG  370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  AGGGGGCTATGGAAAGGTTTTTCAAGTACGAAAAGTAACAGGAGCAAATACTGGGAAAATATTTGCCATGAAGG  370

Query  371  TGCTTAAAAAGGCAATGATAGTAAGAAATGCTAAAGATACAGCTCATACAAAAGCAGAACGGAATATTCTGGAG  444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  TGCTTAAAAAGGCAATGATAGTAAGAAATGCTAAAGATACAGCTCATACAAAAGCAGAACGGAATATTCTGGAG  444

Query  445  GAAGTAAAGCATCCCTTCATCGTGGATTTAATTTATGCCTTTCAGACTGGTGGAAAACTCTACCTCATCCTTGA  518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GAAGTAAAGCATCCCTTCATCGTGGATTTAATTTATGCCTTTCAGACTGGTGGAAAACTCTACCTCATCCTTGA  518

Query  519  GTATCTCAGTGGAGGAGAACTATTTATGCAGTTAGAAAGAGAGGGAATATTTATGGAAGACACTGCCTG--CTT  590
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct  519  GTATCTCAGTGGAGGAGAACTATTTATGCAGTTAGAAAGAGAGGGAATATTTATGGAAGACACTGCCTGGCCTT  592

Query  591  TT---ACTTGGCAGAAATCTCCATGGCTTTGGGGCATTTACATCAAAAG-----GGGATCATCTACAGAGACCT  656
            ||   ||   ..||||         |||     ||||||     ||.||     |||||.|     ||.|.|||
Sbjct  593  TTCTAAC---AAAGAA---------GCT-----GCATTT-----AAGAGCCTTAGGGATGA-----AGTGCCCT  639

Query  657  ------GAAGCCGGAGAATATCATGCTTAATCACCAAGGTCATGTGAAACTAACAGACTTTGGACTATGCAAAG  724
                  ||    ||||        ||    ||||                                        
Sbjct  640  TTTTTGGA----GGAG--------GC----TCAC----------------------------------------  657

Query  725  AATCTATTCATGATGGAACAGTCACACACACATTTTGTGGAACAATAGAATACATGGCCCCTGAAATCTTGATG  798
                                                                                      
Sbjct  658  --------------------------------------------------------------------------  657

Query  799  AGAAGTGGCCACAATCGTGCTGTGGATTGGTGGAGTTTGGGAGCATTAATGTATGACATGCTGACTGGAGCACC  872
                                                                                      
Sbjct  658  --------------------------------------------------------------------------  657

Query  873  CCCATTCACTGGGGAGAATAGAAAGAAAACAATTGACAAAATCCTCAAATGTAAACTCAATTTGCCTCCCTACC  946
                                                                                      
Sbjct  658  --------------------------------------------------------------------------  657

Query  947  TCACACAAGAAGCCAGAGATCTGCTTAAAAAGCTGCTGAAAAGAAATGCTGCTTCTCGTCTGGGAGCTGGTCCT  1020
                                                                                      
Sbjct  658  --------------------------------------------------------------------------  657

Query 1021  GGGGACGCTGGAGAAGTTCAAGCTCATCCATTCTTTAGACACATTAACTGGGAAGAACTTCTGGCTCGAAAGGT  1094
                                                                                      
Sbjct  658  --------------------------------------------------------------------------  657

Query 1095  GGAGCCCCCCTTTAAACCTCTGTTGCAATCTGAAGAGGATGTAAGTCAGTTTGATTCCAAGTTTACACGTCAGA  1168
                                                                                      
Sbjct  658  --------------------------------------------------------------------------  657

Query 1169  CACCTGTCGACAGCCCAGATGACTCAACTCTCAGTGAAAGTGCCAATCAGGTCTTTCTGGGTTTTACATATGTG  1242
                                                                                      
Sbjct  658  --------------------------------------------------------------------------  657

Query 1243  GCTCCATCTGTACTTGAAAGTGTGAAAGAAAAGTTTTCCTTTGAACCAAAAATCCGATCACCTCGAAGATTTAT  1316
                                                                                      
Sbjct  658  --------------------------------------------------------------------------  657

Query 1317  TGGCAGCCCACGAACACCTGTCAGTACTGCTATGTGC  1353
                                                 
Sbjct  658  -------------------------------------  657