Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_14833
- Subject:
- NR_161456.1
- Aligned Length:
- 5432
- Identities:
- 1348
- Gaps:
- 4080
Alignment
Query 1 ----------------------------------------------------------------ATGAGGCGAC 10
||||||||||
Sbjct 1 GCACTGAGCCTAAGCAGCCGGTGATGGCGGCAGCGGCTGTGGTGGCTGCGGCGGGTCCGGGCCCATGAGGCGAC 74
Query 11 GAAGGAGGCGGGACGGCTTTTACCCAGCCCCGGACTTCCGAGACAGGGAAGCTGAGGACATGGCAGGAGTGTTT 84
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 GAAGGAGGCGGGACGGCTTTTACCCAGCCCCGGACTTCCGAGACAGGGAAGCTGAGGACATGGCAGGAGTGTTT 148
Query 85 GACATAGACCTGGACCAGCCAGAGGACGCGGGCTCTGAGGATGAGCTGGAGGAGGGGGGTCAGTTAAATGAAAG 158
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||.|||||||||||||
Sbjct 149 GACATAGACCTGGACCAGCCAGAGGACGCGGGCTCTGAGGATGAGCTGGAGGA-GGGGGTGAGTTAAATGAAAG 221
Query 159 CATGGACCATGGGGGAGTTGGACCATATGAACTTGGCATGGAACATTGTGAGAAATTTGAAATCTCAGAAACTA 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 222 CATGGACCATGGGGGAGTTGGACCATATGAACTTGGCATGGAACATTGTGAGAAATTTGAAATCTCAGAAACTA 295
Query 233 GTGTGAACAGAGGGCCAGAAAAAATCAGACCAGAATGTTTTGAGCTACTTCGGGTACTTGGTAAAGGGGGCTAT 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 GTGTGAACAGAGGGCCAGAAAAAATCAGACCAGAATGTTTTGAGCTACTTCGGGTACTTGGTAAAGGGGGCTAT 369
Query 307 GGAAAGGTTTTTCAAGTACGAAAAGTAACAGGAGCAAATACTGGGAAAATATTTGCCATGAAGGTGCTTAAAAA 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 GGAAAGGTTTTTCAAGTACGAAAAGTAACAGGAGCAAATACTGGGAAAATATTTGCCATGAAGGTGCTTAAAAA 443
Query 381 GGCAATGATAGTAAGAAATGCTAAAGATACAGCTCATACAAAAGCAGAACGGAATATTCTGGAGGAAGTAAAGC 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 444 GGCAATGATAGTAAGAAATGCTAAAGATACAGCTCATACAAAAGCAGAACGGAATATTCTGGAGGAAGTAAAGC 517
Query 455 ATCCCTTCATCGTGGATTTAATTTATGCCTTTCAGACTGGTGGAAAACTCTACCTCATCCTTGAGTATCTCAGT 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 518 ATCCCTTCATCGTGGATTTAATTTATGCCTTTCAGACTGGTGGAAAACTCTACCTCATCCTTGAGTATCTCAGT 591
Query 529 GGAGGAGAACTATTTATGCAGTTAGAAAGAGAGGGAATATTTATGGAAGACACTGCCTGCTTTTACTTGGCAGA 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 GGAGGAGAACTATTTATGCAGTTAGAAAGAGAGGGAATATTTATGGAAGACACTGCCTGCTTTTACTTGGCAGA 665
Query 603 AATCTCCATGGCTTTGGGGCATTTACATCAAAAGGGGATCATCTACAGAGACCTGAAGCCGGAGAATATCATGC 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 AATCTCCATGGCTTTGGGGCATTTACATCAAAAGGGGATCATCTACAGAGACCTGAAGCCGGAGAATATCATGC 739
Query 677 TTAATCACCAAGGTCATGTGAAACTAACAGACTTTGGACTATGCAAAGAATCTATTCATGATGGAACAGTCACA 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 740 TTAATCACCAAGGTCATGTGAAACTAACAGACTTTGGACTATGCAAAGAATCTATTCATGATGGAACAGTCACA 813
Query 751 CACACATTTTGTGGAACAATAGAATACATGGCCCCTGAAATCTTGATGAGAAGTGGCCACAATCGTGCTGTGGA 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 814 CACACATTTTGTGGAACAATAGAATACATGGCCCCTGAAATCTTGATGAGAAGTGGCCACAATCGTGCTGTGGA 887
Query 825 TTGGTGGAGTTTGGGAGCATTAATGTATGACATGCTGACTGGAGCA----CCCCCATTCACTGGGGAGAATAGA 894
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 888 TTGGTGGAGTTTGGGAGCATTAATGTATGACATGCTGACTGGAGCAGTAGCCCCCATTCACTGGGGAGAATAGA 961
Query 895 AAGAAAACAATTGACAAAATCCTCAAATGTAAACTCAATTTGCCTCCCTACCTCACACAAGAAGCCAGAGATCT 968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 962 AAGAAAACAATTGACAAAATCCTCAAATGTAAACTCAATTTGCCTCCCTACCTCACACAAGAAGCCAGAGATCT 1035
Query 969 GCTTAAAAAGCTGCTGAAAAGAAATGCTGCTTCTCGTCTGGGAGCTGGTCCTGGGGACGCTGGAGAAGTTCAAG 1042
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1036 GCTTAAAAAGCTGCTGAAAAGAAATGCTGCTTCTCGTCTGGGAGCTGGTCCTGGGGACGCTGGAGAAGTTCAAG 1109
Query 1043 CTCATCCATTCTTTAGACACATTAACTGGGAAGAACTTCTGGCTCGAAAGGTGGAGCCCCCCTTTAAACCTCTG 1116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1110 CTCATCCATTCTTTAGACACATTAACTGGGAAGAACTTCTGGCTCGAAAGGTGGAGCCCCCCTTTAAACCTCTG 1183
Query 1117 TTGCAATCTGAAGAGGATGTAAGTCAGTTTGATTCCAAGTTTACACGTCAGACACCTGTCGACAGCCCAGATGA 1190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1184 TTGCAATCTGAAGAGGATGTAAGTCAGTTTGATTCCAAGTTTACACGTCAGACACCTGTCGACAGCCCAGATGA 1257
Query 1191 CTCAACTCTCAGTGAAAGTGCCAATCAGGTCTTTCTGGGTTTTACATATGTGGCTCCATCTGTACTTGAAAGTG 1264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 CTCAACTCTCAGTGAAAGTGCCAATCAGGTCTTTCTGGGTTTTACATATGTGGCTCCATCTGTACTTGAAAGTG 1331
Query 1265 TGAAAGAAAAGTTTTCCTTTGAACCAAAAATCCGATCACCTCGAAGATTTATTGGCAGCCCACGAACACCTGTC 1338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1332 TGAAAGAAAAGTTTTCCTTTGAACCAAAAATCCGATCACCTCGAAGATTTATTGGCAGCCCACGAACACCTGTC 1405
Query 1339 AG------------TACTGCT-----------------ATGTGC------------------------------ 1353
|| |.||.|| |.||||
Sbjct 1406 AGCCCAGTCAAATTTTCTCCTGGGGATTTCTGGGGAAGAGGTGCTTCGGCCAGCACAGCAAATCCTCAGACACC 1479
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 1480 TGTGGAATACCCAATGGAAACAAGTGGCATAGAGCAGATGGATGTGACAATGAGTGGGGAAGCATCGGCACCAC 1553
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 1554 TTCCAATACGACAGCCGAACTCTGGGCCATACAAAAAACAAGCTTTTCCCATGATCTCCAAACGGCCAGAGCAC 1627
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 1628 CTGCGTATGAATCTATGACAGAGCAATGCTTTTAATGAATTTAAGGCAAAAAAGGTGGAGAGGGAGATGTGTGA 1701
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 1702 GCATCCTGCAAGGTGAAACGACTCAAAATGACAGTTTCAGAGAGTCAATGTCATTACATAGAACACTTCAGACA 1775
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 1776 CAGGAAAAATAAACGTGGATTTTAAAAAATCAATCAATGGTGCAAAAAAAAACTTAAAGCAAAATAGTATTGCT 1849
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 1850 GAACTCTTAGGCACATCAATTAATTGATTCCTCGCGACATCTTCTCAACCTTATCAAGGATTTTCATGTTGATG 1923
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 1924 ACTCGAAACTGACAGTATTAAGGGTAGGATGTTGCTTCTGAATCACTGTTGAGTTCTGATTGTGTTGAAGAAGG 1997
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 1998 GTTATCCTTTCATTAGGCAAAGTACAAAATTGCCTATAATACTTGCAACTAAGGACAAATTAGCATGCAAGCTT 2071
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2072 GGTCAAACTTTTTCCAGCAAAATGGAAGCAAAGACAAAAGAAACTTACCAATTGATGTTTTACGTGCAAACAAC 2145
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2146 CTGAATCTTTTTTTTATATAAATATATATTTTTCAAATAGATTTTTGATTCAGCTCATTATGAAAAACATCCCA 2219
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2220 AACTTTAAAATGCGAAATTATTGGTTGGTGTGAAGAAAGCCAGACAACTTCTGTTTCTTCTCTTGGTGAAATAA 2293
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2294 TAAAATGCAAATGAATCATTGTTAACCACAGCTGTGGCTCGTTTGAGGGATTGGGGTGGACCTGGGGTTTATTT 2367
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2368 TCAGTAACCCAGCTGCAATACCTGTCTGTAATATGAGAAAAAAAAAATGAATCTATTTAATCATTTCTACTTGC 2441
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2442 AGTACTGCTATGTGCTAAGCTTAACTGGAAGCCTTGGAATGGGCATAAGTTGTATGTCCTACATTTCATCATTG 2515
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2516 TCCCGGGCCTGCATTGCACTGGAAAAAAAAATCGCCACCTGTTCTTACACCAGTATTTGGTTCAAGACACCAAA 2589
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2590 TGTCTTCAGCCCATGGCTGAAGAACAACAGAAGAGAGTCAGGATAAAAAATACATACTGTGGTCGGCAAGGTGA 2663
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2664 GGGAGATAGGGATATCCAGGGGAAGAGGGTGTTGCTGTGGCCCACTCTCTGTCTAATCTCTTTACAGCAAATTG 2737
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2738 GTAAGATTTTCAGTTTTACTTCTTTCTACTGTTTCTGCTGTCTACCTTCCTTATATTTTTTTCCTCAACAGTTT 2811
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2812 TAAAAAGAAAAAAAGGTCTATTTTTTTTTCTCCTATACTTGGGCTACATTTTTTGATTGTAAAAATATTTGATG 2885
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2886 GCCTTTTGATGAATGTCTTCCACAGTAAAGAAAACTTAGTGGCTTAATTTAGGAAACATGTTAACAGGACACTA 2959
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2960 TGTTTTTGAAATTGTAACAAAATCTACATAAATGATTTACAGGTTAAAAGAATAAAAATAAAGGTAACTTTACC 3033
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3034 TTTCTTAAATATTTCCTGCCTTAAAGAGAGCATTTCCATGACTTTAGCTGGTGAAAGGGTTTAATATCTGCAGA 3107
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3108 GCTTTATAAAAATATATTTCAGTGCATACTGGTATAATAGATGATCATGCAGTTGCAGTTGAGTTGTATCACCT 3181
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3182 TTTTTGTTTGTCTTTTATAATGTCTTCAGTCTGAGTGTGCAAAGTCAATTTGTAATATTTTGCAACCCTAGGAT 3255
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3256 TTTTTTAAATAGATGCTGCTTGCTATGTTTTCAAACCTTTTTGAGCCATAGGATCCAAGCCATAAAATTCTTTA 3329
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3330 TGCATGTTGAATTCAGTCAGAAAAGAGCAAGGCTTTGCTTTTTGAAATTGCAACTCAAATGAGATGGGATGAAA 3403
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3404 TCCTATGACAGTAAGCAAAAACAGAACCATGAAAAATGATTGGACATACACCTTTTCAATTGTGGCAATAATTG 3477
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3478 AAAGAATCGATAAAAGTTCATCTTTGGACAGAAAGCCTTTAAAAAAAAAATCACTCCCTCTTCCCCCTCCTCCC 3551
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3552 TTATTGCAGCAGCCTACTGAGAACTTTGACTGTTGCTGGTAAATTAGAAGCTACAATAATAATTAAGGGCAGAA 3625
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3626 ATTATACTTAAAAAGTGCAGATCCTTGTTCTTTGACAATTTGTGATGTCTGAAAAAACAGAACCCGAAAAGCTA 3699
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3700 TGGTGATATGTACAGGCATTATTTCAGACTGTAAATGGCTTGTGATACTCTTGATACTTGTTTTCAAATATGTT 3773
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3774 TACTAACTGTAGTGTTGACTGCCTGACCAAATTCCAGTGAAACTTATACACCAAAATATTCTTCCTAGGTCCTA 3847
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3848 TTTGCTAGTAACATGAGCACTGTGATTGGCTGGCTATAACCACCCCAGTTAAACCATTTTCATAATTAGTAGTG 3921
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3922 CCAGCAATAGTGGCAAACACTGCAACTTTTCTGCATAAAAAGCATTAATTGCACAGCTACCATCCACACAAATA 3995
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3996 CATAGTTTTTCTGACTTCACATTTATTAAGTGAAATTTATTTCCCATGCTGTGGAAAGTTTATTGAGAACTTGT 4069
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4070 TTCATAAATGGATATCCCTACTATGACTGTGAAAACATGTCAAGTGTCACATTAGTGTCACAGACAGAAAGCAC 4143
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4144 ACACCTATGCAATATGGCTTATCTATATTTATTTGTAAAAATCCAAGCATAGTTTAAAATATGATGTCGATATT 4217
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4218 ACTAGTCTTGAGTTTCTAAGAGGGTTCTTTATGTTATACCAGGTAAGTGTATAAAAGAGATTAAGTGCTTTTTT 4291
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4292 TTCATCACTTGATTATTTTCTTTAAAATCAGCTATTACAGGATATTTTTTTATTTTATACATGCTGTTTTTTAA 4365
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4366 TTAAAATATAATCACTGAAGTTTACTAATTTGATTTTATAAGGTTTGTAGCATTACAGAATAACTAAACTGGGA 4439
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4440 TTTATAAACCAGCTGTGATTAACAATGTAAAGTATTAATTATTGAACTTTGAACCAGATTTTTAGGAAAATTAT 4513
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4514 GTTCTTTTTCCCCCTTTATGGTCTTAACTAATTTGAATCCTTCAAGAAGGATTTTTCCATACTATTTTTTAAGA 4587
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4588 TAGAAGATAATTTGTGGGCAGGGGTGGAGGATGCATGTATGATACTCCATAAATTCAACATTCTTTACTATAGG 4661
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4662 TAATGAATGATTATAAACAAGATGCATCTTAGATAGTATTAATATACTGAGCCTTGGATTATATATTTAATATA 4735
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4736 GGACCTATTTTGAATATTCAGTTAATCATATGGTTCCTAGCTTACAAGGGCTAGATCTAAGATTATTCCCATGA 4809
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4810 GAAATGTTGAATTTATGAAGAATAGATTTTAAGGCTTTGAAAATGGTTAATTTCTCAAAAACATCAATGTCCAA 4883
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4884 ACATCTACCTTTTTTCATAGGAGTAGACACTAGCAAGCTGGACAAACTATCACAAAAGTATTTGTCACACATAA 4957
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4958 CCTGTGGTCTGTTGCTGATTAATACAGTACTTTTTCTTGTGTGATTCTTAACATTATAGCACAAGTATTATCTC 5031
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 5032 AGTGGATTATCCGGAATAACATCTGAAAGATGGGTTCATCTATGTTTGTGTTTGCTCTTTAAACTATTGTTTCT 5105
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 5106 CCTATCCCAAGTTCGCTTTGCATCTATCAGTAAATAAAATTCTTCAGCTGCCTTATTAGGAGTGCTATGAGGGT 5179
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 5180 AACACCTGTTCTGCTTTTCATCTTGTATTTAGTTGACTGTATTATTTGATTTCGGATTGAATGAATGTAAATAG 5253
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 5254 AAATTAAATGCAAATTTGAATGAACATAAATAGAAGTGATTTATTTTTTTATTATCTTAAAGATAGGAAGGAAT 5327
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 5328 TAGTATACGTATCAGGTGTATAAATGGTTTAAATTTATTTTAACATGTCAGATGTGTTCAAGTTGTCATATAAA 5401
Query 1354 ------------------------------ 1353
Sbjct 5402 TAAACTATGTATGTAAGGAATGGGTTAAAA 5431
