Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_14833
- Subject:
- NR_161459.1
- Aligned Length:
- 5428
- Identities:
- 1328
- Gaps:
- 4097
Alignment
Query 1 ----------------------------------------------------------------ATGAGGCGAC 10
||||||||||
Sbjct 1 GCACTGAGCCTAAGCAGCCGGTGATGGCGGCAGCGGCTGTGGTGGCTGCGGCGGGTCCGGGCCCATGAGGCGAC 74
Query 11 GAAGGAGGCGGGACGGCTTTTACCCAGCCCCGGACTTCCGAGACAGGGAAGCTGAGGACATGGCAGGAGTGTTT 84
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 GAAGGAGGCGGGACGGCTTTTACCCAGCCCCGGACTTCCGAGACAGGGAAGCTGAGGACATGGCAGGAGTGTTT 148
Query 85 GACATAGACCTGGACCAGCCAGAGGACGCGGGCTCTGAGGATGAGCTGGAGGAGGGGGGTCAGTTAAATGAAAG 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 GACATAGACCTGGACCAGCCAGAGGACGCGGGCTCTGAGGATGAGCTGGAGGAGGGGGGTCAGTTAAATGAAAG 222
Query 159 CATGGACCATGGGGGAGTTGGACCATATGAACTTGGCATGGAACATTGTGAGAAATTTGAAATCTCAGAAACTA 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 CATGGACCATGGGGGAGTTGGACCATATGAACTTGGCATGGAACATTGTGAGAAATTTGAAATCTCAGAAACTA 296
Query 233 GTGTGAACAGAGGGCCAGAAAAAATCAGACCAGAATGTTTTGAGCTACTTCGGGTACTTGGTAAAGGGGGCTAT 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GTGTGAACAGAGGGCCAGAAAAAATCAGACCAGAATGTTTTGAGCTACTTCGGGTACTTGGTAAAGGGGGCTAT 370
Query 307 GGAAAGGTTTTTCAAGTACGAAAAGTAACAGGAGCAAATACTGGGAAAATATTTGCCATGAAGGTGCTTAAAAA 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GGAAAGGTTTTTCAAGTACGAAAAGTAACAGGAGCAAATACTGGGAAAATATTTGCCATGAAGGTGCTTAAAAA 444
Query 381 GGCAATGATAGTAAGAAATGCTAAAGATACAGCTCATACAAAAGCAGAACGGAATATTCTGGAGGAAGTAAAGC 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GGCAATGATAGTAAGAAATGCTAAAGATACAGCTCATACAAAAGCAGAACGGAATATTCTGGAGGAAGTAAAGC 518
Query 455 ATCCCTTCATCGTGGATTTAATTTATGCCTTTCAGACTGGTGGAAAACTCTACCTCATCCTTGAGTATCTCAGT 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 ATCCCTTCATCGTGGATTTAATTTATGCCTTTCAGACTGGTGGAAAACTCTACCTCATCCTTGAGTATCTCAGT 592
Query 529 GGAGGAGAACTATTTATGCAGTTAGAAAGAGAGGGAATATTTATGGAAGACACTGCCTGCTTTTACTTGGCAGA 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GGAGGAGAACTATTTATGCAGTTAGAAAGAGAGGGAATATTTATGGAAGACACTGCCTGCTTTTACTTGGCAGA 666
Query 603 AATCTCCATGGCTTTGGGGCATTTACATCAAAAGGGGATCATCTACAGAGACCTGAAGCCGGAGAATATCATGC 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 AATCTCCATGGCTTTGGGGCATTTACATCAAAAGGGGATCATCTACAGAGACCTGAAGCCGGAGAATATCATGC 740
Query 677 TTAATCACCAAGGTCATGTGAAACTAACAGACTTTGGACTATGCAAAGAATCTATTCATGATGGAACAGTCACA 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 TTAATCACCAAGGTCATGTGAAACTAACAGACTTTGGACTATGCAAAGAATCTATTCATGATGGAACAGTCACA 814
Query 751 CACACATTTTGTGGAACAATAGAATACATGGCCCCTGAAATCTTGATGAGAAGTGGCCACAATCGTGCTGTGGA 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CACACATTTTGTGGAACAATAGAATACATGGCCCCTGAAATCTTGATGAGAAGTGGCCACAATCGTGCTGTGGA 888
Query 825 TTGGTGGAGTTTGGGAGCATTAATGTATGACATGCTGACTGGAGCACCCCCATTCACTGGGGAGAATAGAAAGA 898
|||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 889 TTGGTGGAGTTTGGGAGCATTAAT----------------------CCCCCATTCACTGGGGAGAATAGAAAGA 940
Query 899 AAACAATTGACAAAATCCTCAAATGTAAACTCAATTTGCCTCCCTACCTCACACAAGAAGCCAGAGATCTGCTT 972
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 941 AAACAATTGACAAAATCCTCAAATGTAAACTCAATTTGCCTCCCTACCTCACACAAGAAGCCAGAGATCTGCTT 1014
Query 973 AAAAAGCTGCTGAAAAGAAATGCTGCTTCTCGTCTGGGAGCTGGTCCTGGGGACGCTGGAGAAGTTCAAGCTCA 1046
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 AAAAAGCTGCTGAAAAGAAATGCTGCTTCTCGTCTGGGAGCTGGTCCTGGGGACGCTGGAGAAGTTCAAGCTCA 1088
Query 1047 TCCATTCTTTAGACACATTAACTGGGAAGAACTTCTGGCTCGAAAGGTGGAGCCCCCCTTTAAACCTCTGTTGC 1120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1089 TCCATTCTTTAGACACATTAACTGGGAAGAACTTCTGGCTCGAAAGGTGGAGCCCCCCTTTAAACCTCTGTTGC 1162
Query 1121 AATCTGAAGAGGATGTAAGTCAGTTTGATTCCAAGTTTACACGTCAGACACCTGTCGACAGCCCAGATGACTCA 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1163 AATCTGAAGAGGATGTAAGTCAGTTTGATTCCAAGTTTACACGTCAGACACCTGTCGACAGCCCAGATGACTCA 1236
Query 1195 ACTCTCAGTGAAAGTGCCAATCAGGTCTTTCTGGGTTTTACATATGTGGCTCCATCTGTACTTGAAAGTGTGAA 1268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1237 ACTCTCAGTGAAAGTGCCAATCAGGTCTTTCTGGGTTTTACATATGTGGCTCCATCTGTACTTGAAAGTGTGAA 1310
Query 1269 AGAAAAGTTTTCCTTTGAACCAAAAATCCGATCACCTCGAAGATTTATTGGCAGCCCACGAACACCTGTCAG-- 1340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1311 AGAAAAGTTTTCCTTTGAACCAAAAATCCGATCACCTCGAAGATTTATTGGCAGCCCACGAACACCTGTCAGCC 1384
Query 1341 ----------TACTGCT-----------------ATGTGC---------------------------------- 1353
|.||.|| |.||||
Sbjct 1385 CAGTCAAATTTTCTCCTGGGGATTTCTGGGGAAGAGGTGCTTCGGCCAGCACAGCAAATCCTCAGACACCTGTG 1458
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 1459 GAATACCCAATGGAAACAAGTGGCATAGAGCAGATGGATGTGACAATGAGTGGGGAAGCATCGGCACCACTTCC 1532
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 1533 AATACGACAGCCGAACTCTGGGCCATACAAAAAACAAGCTTTTCCCATGATCTCCAAACGGCCAGAGCACCTGC 1606
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 1607 GTATGAATCTATGACAGAGCAATGCTTTTAATGAATTTAAGGCAAAAAAGGTGGAGAGGGAGATGTGTGAGCAT 1680
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 1681 CCTGCAAGGTGAAACGACTCAAAATGACAGTTTCAGAGAGTCAATGTCATTACATAGAACACTTCAGACACAGG 1754
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 1755 AAAAATAAACGTGGATTTTAAAAAATCAATCAATGGTGCAAAAAAAAACTTAAAGCAAAATAGTATTGCTGAAC 1828
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 1829 TCTTAGGCACATCAATTAATTGATTCCTCGCGACATCTTCTCAACCTTATCAAGGATTTTCATGTTGATGACTC 1902
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 1903 GAAACTGACAGTATTAAGGGTAGGATGTTGCTTCTGAATCACTGTTGAGTTCTGATTGTGTTGAAGAAGGGTTA 1976
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 1977 TCCTTTCATTAGGCAAAGTACAAAATTGCCTATAATACTTGCAACTAAGGACAAATTAGCATGCAAGCTTGGTC 2050
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2051 AAACTTTTTCCAGCAAAATGGAAGCAAAGACAAAAGAAACTTACCAATTGATGTTTTACGTGCAAACAACCTGA 2124
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2125 ATCTTTTTTTTATATAAATATATATTTTTCAAATAGATTTTTGATTCAGCTCATTATGAAAAACATCCCAAACT 2198
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2199 TTAAAATGCGAAATTATTGGTTGGTGTGAAGAAAGCCAGACAACTTCTGTTTCTTCTCTTGGTGAAATAATAAA 2272
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2273 ATGCAAATGAATCATTGTTAACCACAGCTGTGGCTCGTTTGAGGGATTGGGGTGGACCTGGGGTTTATTTTCAG 2346
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2347 TAACCCAGCTGCAATACCTGTCTGTAATATGAGAAAAAAAAAATGAATCTATTTAATCATTTCTACTTGCAGTA 2420
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2421 CTGCTATGTGCTAAGCTTAACTGGAAGCCTTGGAATGGGCATAAGTTGTATGTCCTACATTTCATCATTGTCCC 2494
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2495 GGGCCTGCATTGCACTGGAAAAAAAAATCGCCACCTGTTCTTACACCAGTATTTGGTTCAAGACACCAAATGTC 2568
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2569 TTCAGCCCATGGCTGAAGAACAACAGAAGAGAGTCAGGATAAAAAATACATACTGTGGTCGGCAAGGTGAGGGA 2642
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2643 GATAGGGATATCCAGGGGAAGAGGGTGTTGCTGTGGCCCACTCTCTGTCTAATCTCTTTACAGCAAATTGGTAA 2716
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2717 GATTTTCAGTTTTACTTCTTTCTACTGTTTCTGCTGTCTACCTTCCTTATATTTTTTTCCTCAACAGTTTTAAA 2790
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2791 AAGAAAAAAAGGTCTATTTTTTTTTCTCCTATACTTGGGCTACATTTTTTGATTGTAAAAATATTTGATGGCCT 2864
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2865 TTTGATGAATGTCTTCCACAGTAAAGAAAACTTAGTGGCTTAATTTAGGAAACATGTTAACAGGACACTATGTT 2938
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2939 TTTGAAATTGTAACAAAATCTACATAAATGATTTACAGGTTAAAAGAATAAAAATAAAGGTAACTTTACCTTTC 3012
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3013 TTAAATATTTCCTGCCTTAAAGAGAGCATTTCCATGACTTTAGCTGGTGAAAGGGTTTAATATCTGCAGAGCTT 3086
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3087 TATAAAAATATATTTCAGTGCATACTGGTATAATAGATGATCATGCAGTTGCAGTTGAGTTGTATCACCTTTTT 3160
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3161 TGTTTGTCTTTTATAATGTCTTCAGTCTGAGTGTGCAAAGTCAATTTGTAATATTTTGCAACCCTAGGATTTTT 3234
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3235 TTAAATAGATGCTGCTTGCTATGTTTTCAAACCTTTTTGAGCCATAGGATCCAAGCCATAAAATTCTTTATGCA 3308
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3309 TGTTGAATTCAGTCAGAAAAGAGCAAGGCTTTGCTTTTTGAAATTGCAACTCAAATGAGATGGGATGAAATCCT 3382
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3383 ATGACAGTAAGCAAAAACAGAACCATGAAAAATGATTGGACATACACCTTTTCAATTGTGGCAATAATTGAAAG 3456
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3457 AATCGATAAAAGTTCATCTTTGGACAGAAAGCCTTTAAAAAAAAAATCACTCCCTCTTCCCCCTCCTCCCTTAT 3530
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3531 TGCAGCAGCCTACTGAGAACTTTGACTGTTGCTGGTAAATTAGAAGCTACAATAATAATTAAGGGCAGAAATTA 3604
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3605 TACTTAAAAAGTGCAGATCCTTGTTCTTTGACAATTTGTGATGTCTGAAAAAACAGAACCCGAAAAGCTATGGT 3678
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3679 GATATGTACAGGCATTATTTCAGACTGTAAATGGCTTGTGATACTCTTGATACTTGTTTTCAAATATGTTTACT 3752
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3753 AACTGTAGTGTTGACTGCCTGACCAAATTCCAGTGAAACTTATACACCAAAATATTCTTCCTAGGTCCTATTTG 3826
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3827 CTAGTAACATGAGCACTGTGATTGGCTGGCTATAACCACCCCAGTTAAACCATTTTCATAATTAGTAGTGCCAG 3900
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3901 CAATAGTGGCAAACACTGCAACTTTTCTGCATAAAAAGCATTAATTGCACAGCTACCATCCACACAAATACATA 3974
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3975 GTTTTTCTGACTTCACATTTATTAAGTGAAATTTATTTCCCATGCTGTGGAAAGTTTATTGAGAACTTGTTTCA 4048
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4049 TAAATGGATATCCCTACTATGACTGTGAAAACATGTCAAGTGTCACATTAGTGTCACAGACAGAAAGCACACAC 4122
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4123 CTATGCAATATGGCTTATCTATATTTATTTGTAAAAATCCAAGCATAGTTTAAAATATGATGTCGATATTACTA 4196
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4197 GTCTTGAGTTTCTAAGAGGGTTCTTTATGTTATACCAGGTAAGTGTATAAAAGAGATTAAGTGCTTTTTTTTCA 4270
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4271 TCACTTGATTATTTTCTTTAAAATCAGCTATTACAGGATATTTTTTTATTTTATACATGCTGTTTTTTAATTAA 4344
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4345 AATATAATCACTGAAGTTTACTAATTTGATTTTATAAGGTTTGTAGCATTACAGAATAACTAAACTGGGATTTA 4418
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4419 TAAACCAGCTGTGATTAACAATGTAAAGTATTAATTATTGAACTTTGAACCAGATTTTTAGGAAAATTATGTTC 4492
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4493 TTTTTCCCCCTTTATGGTCTTAACTAATTTGAATCCTTCAAGAAGGATTTTTCCATACTATTTTTTAAGATAGA 4566
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4567 AGATAATTTGTGGGCAGGGGTGGAGGATGCATGTATGATACTCCATAAATTCAACATTCTTTACTATAGGTAAT 4640
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4641 GAATGATTATAAACAAGATGCATCTTAGATAGTATTAATATACTGAGCCTTGGATTATATATTTAATATAGGAC 4714
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4715 CTATTTTGAATATTCAGTTAATCATATGGTTCCTAGCTTACAAGGGCTAGATCTAAGATTATTCCCATGAGAAA 4788
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4789 TGTTGAATTTATGAAGAATAGATTTTAAGGCTTTGAAAATGGTTAATTTCTCAAAAACATCAATGTCCAAACAT 4862
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4863 CTACCTTTTTTCATAGGAGTAGACACTAGCAAGCTGGACAAACTATCACAAAAGTATTTGTCACACATAACCTG 4936
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4937 TGGTCTGTTGCTGATTAATACAGTACTTTTTCTTGTGTGATTCTTAACATTATAGCACAAGTATTATCTCAGTG 5010
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 5011 GATTATCCGGAATAACATCTGAAAGATGGGTTCATCTATGTTTGTGTTTGCTCTTTAAACTATTGTTTCTCCTA 5084
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 5085 TCCCAAGTTCGCTTTGCATCTATCAGTAAATAAAATTCTTCAGCTGCCTTATTAGGAGTGCTATGAGGGTAACA 5158
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 5159 CCTGTTCTGCTTTTCATCTTGTATTTAGTTGACTGTATTATTTGATTTCGGATTGAATGAATGTAAATAGAAAT 5232
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 5233 TAAATGCAAATTTGAATGAACATAAATAGAAGTGATTTATTTTTTTATTATCTTAAAGATAGGAAGGAATTAGT 5306
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 5307 ATACGTATCAGGTGTATAAATGGTTTAAATTTATTTTAACATGTCAGATGTGTTCAAGTTGTCATATAAATAAA 5380
Query 1354 -------------------------- 1353
Sbjct 5381 CTATGTATGTAAGGAATGGGTTAAAA 5406
