Nucleotide Global Alignment

Description

Query:
ccsbBroad304_14884
Subject:
XR_001781537.1
Aligned Length:
4180
Identities:
1451
Gaps:
2558

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  TTCACCCCCTTAGCATATGTTAGTTACACATTTTAATGGGTTTCACTGTTACATTTTCATACGTGTGTGTAATG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TACTTGATCACCCATATTCCCCATAACTCTGGTTCCATCGTTCCCATAGCCTCCTTGTCTCCTTACATTGTCAT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  ATCGGTTTTTGTTTTGTTTTTTGTTTTGTTTTTGTGACCCACAGAGTTTAACTAGGTTTGCAAATAGGATCATG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  AATGAGGGTTAATTTACAGTATCACTAGCACCTTATCAATGGCTATACCATCAAAGAAAATGGCTTTCCTTCTC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CCCAGCAACCATTAGCTGCATGTATAGTCTCAACAATAGAGGACCAGAGGGAGGGAAGAGGTGATGTGGTGTGA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GCCCTCCATATCTCAGGATTGCATGTTCACATATCCAATATGTGATAATCACTATATTTTATGCTGATAATCAC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  TATATCCCTAGAGTTTATGGGTTTGTTTGTTTGTTTGTTTGTTTTTAAGACAAACTTTCACTCTATAGCCTAGG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CTGGCCTGAAACTCACTATGAAGCCAGAGATGACCTTGAACTTCTGATCCTCTCACCTCCATCCCTGAGTGCTG  592

Query    1  -------------------------------------------ATGGCTTGCCTCCATGAGACCCGAACACCCT  31
                                                       |||||.|||||||||||.|||||||||||||
Sbjct  593  GGACTGCTGGGCCCGCTGCTCAGCACACCTGGCTCCAGAGGCCATGGCCTGCCTCCATGAAACCCGAACACCCT  666

Query   32  CTCCTTCCTTTGGGGGCTTTGTGTCTACCCTAAGTGAGGCATCCATGCGCAAGCTGGACCCAGACACTTCTGAC  105
            |.||||||||||||||||||||||||||.|||||||||||.||.|||||.||||||||.|||||||||||.|||
Sbjct  667  CCCCTTCCTTTGGGGGCTTTGTGTCTACTCTAAGTGAGGCTTCTATGCGAAAGCTGGATCCAGACACTTCAGAC  740

Query  106  TGCACTCCCGAGAAGGACCTGACGCCTACCCAGTGTGTACTTCGAGATGTGGTACCCCTTGGTGGGCAGGGTGG  179
            |||||.||||||||.|||||||||||.|||||.|||||||||||||||||.||.||.||.||||||||||||||
Sbjct  741  TGCACCCCCGAGAAAGACCTGACGCCCACCCAATGTGTACTTCGAGATGTTGTGCCTCTCGGTGGGCAGGGTGG  814

Query  180  GGGAGGGCCCAGCCCCTCCCCAGGTGGAGAGCCGCCCCCTGAGCCTTTTGCCAACAGTGTCCTGCAGCTACATG  253
            .|||||.||||||||||||||||||||||||||.|||||.||||||||||||||.||||||||.||||||||||
Sbjct  815  AGGAGGACCCAGCCCCTCCCCAGGTGGAGAGCCTCCCCCAGAGCCTTTTGCCAATAGTGTCCTCCAGCTACATG  888

Query  254  AGCAGGATGCAGGGGGCCCAGGGGGAGCAGCTGGGTCACCTGAGAGTCGGGCATCCAGAGTTCGAGCTGACGAG  327
            ||||||||.||||.||.|||||||||||..|||||||||||||||||||.|||||.||||||||||||||.|||
Sbjct  889  AGCAGGATACAGGTGGGCCAGGGGGAGCCACTGGGTCACCTGAGAGTCGAGCATCTAGAGTTCGAGCTGATGAG  962

Query  328  GTGCGACTGCAGTGCCAGAGTGGCAGTGGCTTCCTTGAGGGCCTCTTTGGCTGCCTGCGCCCTGTCTGGACCAT  401
            ||.||.||||||||||||||||||||||||||||||||.||.||.||||||||||||||||||||||||||.||
Sbjct  963  GTACGTCTGCAGTGCCAGAGTGGCAGTGGCTTCCTTGAAGGTCTTTTTGGCTGCCTGCGCCCTGTCTGGACAAT  1036

Query  402  GATTGGCAAAGCCTACTCCACTGAGCACAAGCAGCAGCAGGAAGACCTTTGGGAGGTCCCCTTTGAGGAAATCC  475
            |||||||||||||||||||||.||.||||||||.||||||||||||||||||||.|||||||||||||||||||
Sbjct 1037  GATTGGCAAAGCCTACTCCACAGAACACAAGCAACAGCAGGAAGACCTTTGGGAAGTCCCCTTTGAGGAAATCC  1110

Query  476  TGGACCTGCAGTGGGTGGGCTCAGGGGCCCAGGGTGCTGTCTTCCTGGGGCGCTTCCACGGGGAGGAGGTGGCT  549
            ||||||||||||||||.|||||||||||.|||||||||||.||||||||.||||||||||||||||||||.|||
Sbjct 1111  TGGACCTGCAGTGGGTAGGCTCAGGGGCTCAGGGTGCTGTTTTCCTGGGACGCTTCCACGGGGAGGAGGTAGCT  1184

Query  550  GTGAAGAAGGTGCGAGACCTCAAAGAAACCGACATCAAGCA-CTTGCGAAAGCTGAAGCACCCCAACATCATCA  622
            |||||||||||.|||||.|||||.||.||.||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 1185  GTGAAGAAGGTTCGAGATCTCAAGGAGACTGACATCAAGCATCTT-CGAAAGCTGAAGCACCCCAACATCATCA  1257

Query  623  CTTTCAAGGGTGTGTGCACCCAGGCTCCCTGCTACTGCATCCTCATGGAGTTCTGCGCCCAGGGCCAGCTGTAT  696
            |||||||||||||.|||||.|||||.|||||||||||||||||.|||||.||||||||.||.||.|||||.|||
Sbjct 1258  CTTTCAAGGGTGTTTGCACACAGGCCCCCTGCTACTGCATCCTTATGGAATTCTGCGCTCAAGGACAGCTATAT  1331

Query  697  GAGGTACTGCGGGCTGGCCGCCCTGTCACCCCCTCCTTACTGGTTGACTGGTCCATGGGCATCGCTGGTGGCAT  770
            |||||.||..|.||.|||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||
Sbjct 1332  GAGGTGCTCAGAGCCGGCCGCCCTGTCACCCCCTCCTTGCTGGTTGACTGGTCCATGGGCATCGCTGGTGGCAT  1405

Query  771  GAACTACCTGCACCTGCACAAGATTATCCACAGGGATCTCAAGTCACCCAACATGCTAATCACCTACGACGATG  844
            |||.|||||||||||||||||||||||||||||.||.||.|||||||||||||||||||||||.||||||||||
Sbjct 1406  GAATTACCTGCACCTGCACAAGATTATCCACAGAGACCTGAAGTCACCCAACATGCTAATCACATACGACGATG  1479

Query  845  TGGTGAAGATCTCAGATTTTGGCACTTCCAAGGAGCTGAGTGACAAGAGCACCAAGATGTCCTTTGCAGGGACA  918
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||
Sbjct 1480  TGGTGAAGATCTCAGATTTTGGCACTTCCAAGGAGCTGAGTGACAAGAGCACCAAGATGTCCTTTGCAGGAACA  1553

Query  919  GTAGCCTGGATGGCCCCTGAGGTGATCCGCAATGAACCTGTGTCTGAGAAGGTCGACATCTGGTCCTTTGGCGT  992
            ||||||||||||||.|||||.||||||.|.|||||||||||||||||||||||.|||||||||||||||||.||
Sbjct 1554  GTAGCCTGGATGGCTCCTGAAGTGATCAGAAATGAACCTGTGTCTGAGAAGGTTGACATCTGGTCCTTTGGGGT  1627

Query  993  GGTGCTATGGGAACTGCTGACTGGTGAGATCCCCTACAAAGACGTAGATTCCTCAGCCATTATCTGGGGTGTGG  1066
            |||||||||||||||.||||||||.|||||.|||||||||||.|||||||||||||||||.|||||||||||||
Sbjct 1628  GGTGCTATGGGAACTACTGACTGGAGAGATTCCCTACAAAGATGTAGATTCCTCAGCCATCATCTGGGGTGTGG  1701

Query 1067  GAAGCAACAGTCTCCATCTGCCCGTGCCCTCCAGTTGCCCAGATGGTTTCAAGATCCTGCTTCGCCAGTGCTGG  1140
            ||||||||||||||||.|||||.||.||||||||.||||||||||||||.||.||.||.|||||||||||||||
Sbjct 1702  GAAGCAACAGTCTCCACCTGCCTGTACCCTCCAGCTGCCCAGATGGTTTTAAAATTCTACTTCGCCAGTGCTGG  1775

Query 1141  AATAGCAAACCACGAAATCGCCCATCATTCCGACAGATCCTGCTGCATCTGGACATTGCCTCAGCTGATGTACT  1214
            ||.||||||||||||||||||||||||||||||||||||.|||||||.||||||||.|||||.||||||||.||
Sbjct 1776  AACAGCAAACCACGAAATCGCCCATCATTCCGACAGATCTTGCTGCACCTGGACATCGCCTCCGCTGATGTGCT  1849

Query 1215  CTCCACACCCCAGGAGACTTACTTTAAGTCCCAGGCAGAGTGGCGGGAA-----------GAAGTAAAACTGCA  1277
            |||.|||||||||||||||||||||||||||||         ||.||||           |.|||       ||
Sbjct 1850  CTCTACACCCCAGGAGACTTACTTTAAGTCCCA---------GCAGGAACCATTCATCATGGAGT-------CA  1907

Query 1278  CTTTGAAAAG------ATTAAGTCAGAAGGGA--CCTGTCTGCACCGCCT-AGAAGAGGAACTGGTGATGAGGA  1342
            |...|||.||      .||..|.||.|||.||  ||.| || |||||  | .|||.|..|.||           
Sbjct 1908  CAGAGAACAGGGTCCATTTCGGCCACAAGCGAACCCAG-CT-CACCG--TGGGAAAATCATCT-----------  1966

Query 1343  GGAGGGAGGAGC----TCAGACACGCCCTGGACATCAGGGAGCACTATGAAAGGAAGCTGGAGAGAGCCAACAA  1412
                      ||    |||||||.|||||||||||||||||||||||||||.|||||.||||||||||||||||
Sbjct 1967  ----------GCCCTTTCAGACATGCCCTGGACATCAGGGAGCACTATGAACGGAAGTTGGAGAGAGCCAACAA  2030

Query 1413  CCTGTATATGGAACTTAATGCCCTCATGTTGCAGCTGGAACTCAAGGAGAGGGAGCTGCTCAGGCGAGAGCAAG  1486
            ||||||.||||||||.||||||||||||.||||.||.||||||||.||||||||..||||||||||||||||.|
Sbjct 2031  CCTGTACATGGAACTGAATGCCCTCATGCTGCAACTAGAACTCAAAGAGAGGGAATTGCTCAGGCGAGAGCAGG  2104

Query 1487  CTTTAGAGCGGAGGTGCCCAGGCCTGCTGAAGCCACACCCTTCCCGGGGCCCCCAGCTTCCCTCCCTCCAT-GA  1559
            |||||||..||.||||.||.||.||.||.|||.||||||||||.|||||||            .|||.||| ||
Sbjct 2105  CTTTAGAAAGGCGGTGTCCTGGTCTACTAAAGTCACACCCTTCTCGGGGCC------------TCCTACATGGA  2166

Query 1560  AAGCCACTCGTATTCCTTGTA------CATAGAGAAA---TATTT---ATATAAATTAT---------------  1606
            ||  ||||        .||.|      |||..|||||   .|..|   |.|.|||.|.|               
Sbjct 2167  AA--CACT--------ATGGAGAAGCTCATCAAGAAAAGGAACGTGCCACAGAAACTGTCGCCCCACAGCAAAA  2230

Query 1607  ----ATATAT-----ATACATA--------TATATATA-TATATGC-GCCACATAATCAACAGAAAGATGGGGC  1661
                |.||||     |.|||.|        ||..||.| ||.|||| |||..|        ||...|.||||||
Sbjct 2231  GGCCAGATATTCTCAAGACAGAGTCGTTGCTACCTAAACTAGATGCAGCCCTA--------AGTGGGGTGGGGC  2296

Query 1662  --------TGTCCCAGCCGTAAG---------TCAGGCTCGAGGGAGACTG-------ATCCCC----------  1701
                    |||||      ||||         ||| .||.||.||||.|.|       |..|||          
Sbjct 2297  TTCCTGGGTGTCC------TAAGGGCCCCCCTTCA-CCTGGAAGGAGTCGGCGTGGCAAGACCCGTCACCGAAA  2363

Query 1702  --------------------------------------------------------------------------  1701
                                                                                      
Sbjct 2364  GGCCAGTGCCAAGGGCAGCTGTGGAGACCTGCCTGGGCTTCGTGCAGCTTTGCCACCCCATGAGCCTGGAGGAC  2437

Query 1702  --------------------------------------------------------------------------  1701
                                                                                      
Sbjct 2438  TAGGAAGCCCAGGGGGCCTAGGAGTGGGCCCTTCAGCTTGGGATGCTTGCCCCCCTGCTCTCCGTGGACTCCAC  2511

Query 1702  --------------------------------------------------------------------------  1701
                                                                                      
Sbjct 2512  CATGACCTTCTACTCCGAAAGATGTCATCATCATCCCCAGACCTGCTATCAGCAGCGCTGGGAGCCCGAGGCCG  2585

Query 1702  --------------------------------------------------------------------------  1701
                                                                                      
Sbjct 2586  AGGGGCTACAGGGGGAGCTCGGGATCCTGGCTCACCACCTCCACCCCAGGGCGATACTCCTCCAAGTGAGGGAT  2659

Query 1702  --------------------------------------------------------------------------  1701
                                                                                      
Sbjct 2660  CAGCTCCTGGTTCCACCAGCCCAGATTCGCCTGGGGGAGCTAAAGGGGAACCCCCTCCACCAGTAGGGCCTGGA  2733

Query 1702  --------------------------------------------------------------------------  1701
                                                                                      
Sbjct 2734  GAAGGTGTGGGGCTGCTGGGAACTGGAAGGGAAGGGACTGCAGGCCGGGGAGGAAACCGGGCTGGGTCCCAGCA  2807

Query 1702  --------------------------------------------------------------------------  1701
                                                                                      
Sbjct 2808  CTTGACCCCCGCTGCGCTGCTGTACAGGGCTGCTGTGACTCGAAGTCAGGTAAAGTATGGGGATGTTCTTCTAC  2881

Query 1702  --------------------------------------------------------------------------  1701
                                                                                      
Sbjct 2882  CCCACACCAAATTAAAATCCTTTAATCTCCTCATGGGTCCAAGTGCTAACTATACCCCAACCCCACTCAACTAT  2955

Query 1702  --------------------------------------------------------------------------  1701
                                                                                      
Sbjct 2956  GTATCCTTGCCCAATTCTTAATGACTTACCATTTTTTGACTGGTTTACTTACACCTACCCACACCCATCTCTAC  3029

Query 1702  --------------------------------------------------------------------------  1701
                                                                                      
Sbjct 3030  TGTAGAAACGTGGTATCTCATCTGAAGAAGAAGAAGGAGAGGTAGACAGTGAAGTAGAGCTACCCCCAAGTCAA  3103

Query 1702  --------------------------------------------------------------------------  1701
                                                                                      
Sbjct 3104  AGGTGGCCTCAGGGCCCGAACATGCGTCAGTCACTATCTACATTCAGCTCAGAGAACCCATCAGATGTGGAGGA  3177

Query 1702  --------------------------------------------------------------------------  1701
                                                                                      
Sbjct 3178  AGGTACAGCTAGTGAGCCTTCCCCAAGTGGCACACCAGAAGTTGGCAGTACCAACACTGATGAGCGACCAGATG  3251

Query 1702  --------------------------------------------------------------------------  1701
                                                                                      
Sbjct 3252  AACGATCTGATGACATGTGCTCACAGGGCTCAGAAATTCCACTGGACCTACCTACTTCAGAGGTGGTCCCTGAA  3325

Query 1702  --------------------------------------------------------------------------  1701
                                                                                      
Sbjct 3326  CGTGAAGCCAGCTCCTTGCCCATGCAACACCAGGATGGCCAGGGCCCCAATCCTGAAGACTCAGACTGTGACAG  3399

Query 1702  --------------------------------------------------------------------------  1701
                                                                                      
Sbjct 3400  CACTGAATTGGACAACTCCAACAGCATTGATGCCTTGCGGCCCCCAGCCTCCCTTCCTCCATGAAAGACACTCT  3473

Query 1702  --------------------------------------------------------------------------  1701
                                                                                      
Sbjct 3474  TATTCCTTGTACATAGAGAAATATTTATATAAATAATATATATGCGCCACATAATCAACAGATAGATGGGGCTT  3547

Query 1702  --------------------------------------------------------------------------  1701
                                                                                      
Sbjct 3548  TCTTAGCCTTAAGCCAGGCTTGAGAGTGAACGACGCCCCTGACCAATTACCGAATAAGTTCTGGGGACACTGGC  3621

Query 1702  --------------------------------------------------------------------------  1701
                                                                                      
Sbjct 3622  AGCTGTGGAAATGAATGACTCCGAGTACTACCCTAGAGCTATAAAGAAAGGAAGCTGGCCCCTTCTTGCTTCAC  3695

Query 1702  --------------------------------------------------------------------------  1701
                                                                                      
Sbjct 3696  CCCATTCCTTATGTTGAACAAGCAAGTAGGCAATAGAAAAGCCAGGCTTGTCTCTATACTGTCTATCCCTGAAC  3769

Query 1702  --------------------------------------------------------------------------  1701
                                                                                      
Sbjct 3770  ACTGGAGGGGCAGGTAGAGGATTCACTTAAAACTGCACTTTTATTTTCCGTTTACTGTTTACACATTTTGCACT  3843

Query 1702  --------------------------------------------------------------------------  1701
                                                                                      
Sbjct 3844  TGGGAGGAGGGAAAGAAACTAAGGCTGGGTCATCCCTCTGAGGTTTCTCAGGTGGCAATGTAACTCATTTCTTT  3917

Query 1702  --------------------------------------------------------------------------  1701
                                                                                      
Sbjct 3918  GTTCCTGTTTCTCTGCCCAAACCCTGGCTTTGGGCCAGACGACTAACAGCATGTGATGGCTCAGGCTGAAGAAC  3991

Query 1702  --------------------------------------------------------------------------  1701
                                                                                      
Sbjct 3992  TGGGGTGCTGTTAGTCCCCACTGTTATCTTGGTGCCTGGTAGGGGTGGGGACTGTCATATTGTAACCCCTGTGA  4065

Query 1702  ------------------------------------  1701
                                                
Sbjct 4066  ACAACCTTGAAATATAACCACTCCATGCAGGCCCAA  4101

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