Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_14884
- Subject:
- XR_001781537.1
- Aligned Length:
- 4180
- Identities:
- 1451
- Gaps:
- 2558
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TTCACCCCCTTAGCATATGTTAGTTACACATTTTAATGGGTTTCACTGTTACATTTTCATACGTGTGTGTAATG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TACTTGATCACCCATATTCCCCATAACTCTGGTTCCATCGTTCCCATAGCCTCCTTGTCTCCTTACATTGTCAT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 ATCGGTTTTTGTTTTGTTTTTTGTTTTGTTTTTGTGACCCACAGAGTTTAACTAGGTTTGCAAATAGGATCATG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AATGAGGGTTAATTTACAGTATCACTAGCACCTTATCAATGGCTATACCATCAAAGAAAATGGCTTTCCTTCTC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CCCAGCAACCATTAGCTGCATGTATAGTCTCAACAATAGAGGACCAGAGGGAGGGAAGAGGTGATGTGGTGTGA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GCCCTCCATATCTCAGGATTGCATGTTCACATATCCAATATGTGATAATCACTATATTTTATGCTGATAATCAC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TATATCCCTAGAGTTTATGGGTTTGTTTGTTTGTTTGTTTGTTTTTAAGACAAACTTTCACTCTATAGCCTAGG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CTGGCCTGAAACTCACTATGAAGCCAGAGATGACCTTGAACTTCTGATCCTCTCACCTCCATCCCTGAGTGCTG 592
Query 1 -------------------------------------------ATGGCTTGCCTCCATGAGACCCGAACACCCT 31
|||||.|||||||||||.|||||||||||||
Sbjct 593 GGACTGCTGGGCCCGCTGCTCAGCACACCTGGCTCCAGAGGCCATGGCCTGCCTCCATGAAACCCGAACACCCT 666
Query 32 CTCCTTCCTTTGGGGGCTTTGTGTCTACCCTAAGTGAGGCATCCATGCGCAAGCTGGACCCAGACACTTCTGAC 105
|.||||||||||||||||||||||||||.|||||||||||.||.|||||.||||||||.|||||||||||.|||
Sbjct 667 CCCCTTCCTTTGGGGGCTTTGTGTCTACTCTAAGTGAGGCTTCTATGCGAAAGCTGGATCCAGACACTTCAGAC 740
Query 106 TGCACTCCCGAGAAGGACCTGACGCCTACCCAGTGTGTACTTCGAGATGTGGTACCCCTTGGTGGGCAGGGTGG 179
|||||.||||||||.|||||||||||.|||||.|||||||||||||||||.||.||.||.||||||||||||||
Sbjct 741 TGCACCCCCGAGAAAGACCTGACGCCCACCCAATGTGTACTTCGAGATGTTGTGCCTCTCGGTGGGCAGGGTGG 814
Query 180 GGGAGGGCCCAGCCCCTCCCCAGGTGGAGAGCCGCCCCCTGAGCCTTTTGCCAACAGTGTCCTGCAGCTACATG 253
.|||||.||||||||||||||||||||||||||.|||||.||||||||||||||.||||||||.||||||||||
Sbjct 815 AGGAGGACCCAGCCCCTCCCCAGGTGGAGAGCCTCCCCCAGAGCCTTTTGCCAATAGTGTCCTCCAGCTACATG 888
Query 254 AGCAGGATGCAGGGGGCCCAGGGGGAGCAGCTGGGTCACCTGAGAGTCGGGCATCCAGAGTTCGAGCTGACGAG 327
||||||||.||||.||.|||||||||||..|||||||||||||||||||.|||||.||||||||||||||.|||
Sbjct 889 AGCAGGATACAGGTGGGCCAGGGGGAGCCACTGGGTCACCTGAGAGTCGAGCATCTAGAGTTCGAGCTGATGAG 962
Query 328 GTGCGACTGCAGTGCCAGAGTGGCAGTGGCTTCCTTGAGGGCCTCTTTGGCTGCCTGCGCCCTGTCTGGACCAT 401
||.||.||||||||||||||||||||||||||||||||.||.||.||||||||||||||||||||||||||.||
Sbjct 963 GTACGTCTGCAGTGCCAGAGTGGCAGTGGCTTCCTTGAAGGTCTTTTTGGCTGCCTGCGCCCTGTCTGGACAAT 1036
Query 402 GATTGGCAAAGCCTACTCCACTGAGCACAAGCAGCAGCAGGAAGACCTTTGGGAGGTCCCCTTTGAGGAAATCC 475
|||||||||||||||||||||.||.||||||||.||||||||||||||||||||.|||||||||||||||||||
Sbjct 1037 GATTGGCAAAGCCTACTCCACAGAACACAAGCAACAGCAGGAAGACCTTTGGGAAGTCCCCTTTGAGGAAATCC 1110
Query 476 TGGACCTGCAGTGGGTGGGCTCAGGGGCCCAGGGTGCTGTCTTCCTGGGGCGCTTCCACGGGGAGGAGGTGGCT 549
||||||||||||||||.|||||||||||.|||||||||||.||||||||.||||||||||||||||||||.|||
Sbjct 1111 TGGACCTGCAGTGGGTAGGCTCAGGGGCTCAGGGTGCTGTTTTCCTGGGACGCTTCCACGGGGAGGAGGTAGCT 1184
Query 550 GTGAAGAAGGTGCGAGACCTCAAAGAAACCGACATCAAGCA-CTTGCGAAAGCTGAAGCACCCCAACATCATCA 622
|||||||||||.|||||.|||||.||.||.||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 1185 GTGAAGAAGGTTCGAGATCTCAAGGAGACTGACATCAAGCATCTT-CGAAAGCTGAAGCACCCCAACATCATCA 1257
Query 623 CTTTCAAGGGTGTGTGCACCCAGGCTCCCTGCTACTGCATCCTCATGGAGTTCTGCGCCCAGGGCCAGCTGTAT 696
|||||||||||||.|||||.|||||.|||||||||||||||||.|||||.||||||||.||.||.|||||.|||
Sbjct 1258 CTTTCAAGGGTGTTTGCACACAGGCCCCCTGCTACTGCATCCTTATGGAATTCTGCGCTCAAGGACAGCTATAT 1331
Query 697 GAGGTACTGCGGGCTGGCCGCCCTGTCACCCCCTCCTTACTGGTTGACTGGTCCATGGGCATCGCTGGTGGCAT 770
|||||.||..|.||.|||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||
Sbjct 1332 GAGGTGCTCAGAGCCGGCCGCCCTGTCACCCCCTCCTTGCTGGTTGACTGGTCCATGGGCATCGCTGGTGGCAT 1405
Query 771 GAACTACCTGCACCTGCACAAGATTATCCACAGGGATCTCAAGTCACCCAACATGCTAATCACCTACGACGATG 844
|||.|||||||||||||||||||||||||||||.||.||.|||||||||||||||||||||||.||||||||||
Sbjct 1406 GAATTACCTGCACCTGCACAAGATTATCCACAGAGACCTGAAGTCACCCAACATGCTAATCACATACGACGATG 1479
Query 845 TGGTGAAGATCTCAGATTTTGGCACTTCCAAGGAGCTGAGTGACAAGAGCACCAAGATGTCCTTTGCAGGGACA 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||
Sbjct 1480 TGGTGAAGATCTCAGATTTTGGCACTTCCAAGGAGCTGAGTGACAAGAGCACCAAGATGTCCTTTGCAGGAACA 1553
Query 919 GTAGCCTGGATGGCCCCTGAGGTGATCCGCAATGAACCTGTGTCTGAGAAGGTCGACATCTGGTCCTTTGGCGT 992
||||||||||||||.|||||.||||||.|.|||||||||||||||||||||||.|||||||||||||||||.||
Sbjct 1554 GTAGCCTGGATGGCTCCTGAAGTGATCAGAAATGAACCTGTGTCTGAGAAGGTTGACATCTGGTCCTTTGGGGT 1627
Query 993 GGTGCTATGGGAACTGCTGACTGGTGAGATCCCCTACAAAGACGTAGATTCCTCAGCCATTATCTGGGGTGTGG 1066
|||||||||||||||.||||||||.|||||.|||||||||||.|||||||||||||||||.|||||||||||||
Sbjct 1628 GGTGCTATGGGAACTACTGACTGGAGAGATTCCCTACAAAGATGTAGATTCCTCAGCCATCATCTGGGGTGTGG 1701
Query 1067 GAAGCAACAGTCTCCATCTGCCCGTGCCCTCCAGTTGCCCAGATGGTTTCAAGATCCTGCTTCGCCAGTGCTGG 1140
||||||||||||||||.|||||.||.||||||||.||||||||||||||.||.||.||.|||||||||||||||
Sbjct 1702 GAAGCAACAGTCTCCACCTGCCTGTACCCTCCAGCTGCCCAGATGGTTTTAAAATTCTACTTCGCCAGTGCTGG 1775
Query 1141 AATAGCAAACCACGAAATCGCCCATCATTCCGACAGATCCTGCTGCATCTGGACATTGCCTCAGCTGATGTACT 1214
||.||||||||||||||||||||||||||||||||||||.|||||||.||||||||.|||||.||||||||.||
Sbjct 1776 AACAGCAAACCACGAAATCGCCCATCATTCCGACAGATCTTGCTGCACCTGGACATCGCCTCCGCTGATGTGCT 1849
Query 1215 CTCCACACCCCAGGAGACTTACTTTAAGTCCCAGGCAGAGTGGCGGGAA-----------GAAGTAAAACTGCA 1277
|||.||||||||||||||||||||||||||||| ||.|||| |.||| ||
Sbjct 1850 CTCTACACCCCAGGAGACTTACTTTAAGTCCCA---------GCAGGAACCATTCATCATGGAGT-------CA 1907
Query 1278 CTTTGAAAAG------ATTAAGTCAGAAGGGA--CCTGTCTGCACCGCCT-AGAAGAGGAACTGGTGATGAGGA 1342
|...|||.|| .||..|.||.|||.|| ||.| || ||||| | .|||.|..|.||
Sbjct 1908 CAGAGAACAGGGTCCATTTCGGCCACAAGCGAACCCAG-CT-CACCG--TGGGAAAATCATCT----------- 1966
Query 1343 GGAGGGAGGAGC----TCAGACACGCCCTGGACATCAGGGAGCACTATGAAAGGAAGCTGGAGAGAGCCAACAA 1412
|| |||||||.|||||||||||||||||||||||||||.|||||.||||||||||||||||
Sbjct 1967 ----------GCCCTTTCAGACATGCCCTGGACATCAGGGAGCACTATGAACGGAAGTTGGAGAGAGCCAACAA 2030
Query 1413 CCTGTATATGGAACTTAATGCCCTCATGTTGCAGCTGGAACTCAAGGAGAGGGAGCTGCTCAGGCGAGAGCAAG 1486
||||||.||||||||.||||||||||||.||||.||.||||||||.||||||||..||||||||||||||||.|
Sbjct 2031 CCTGTACATGGAACTGAATGCCCTCATGCTGCAACTAGAACTCAAAGAGAGGGAATTGCTCAGGCGAGAGCAGG 2104
Query 1487 CTTTAGAGCGGAGGTGCCCAGGCCTGCTGAAGCCACACCCTTCCCGGGGCCCCCAGCTTCCCTCCCTCCAT-GA 1559
|||||||..||.||||.||.||.||.||.|||.||||||||||.||||||| .|||.||| ||
Sbjct 2105 CTTTAGAAAGGCGGTGTCCTGGTCTACTAAAGTCACACCCTTCTCGGGGCC------------TCCTACATGGA 2166
Query 1560 AAGCCACTCGTATTCCTTGTA------CATAGAGAAA---TATTT---ATATAAATTAT--------------- 1606
|| |||| .||.| |||..||||| .|..| |.|.|||.|.|
Sbjct 2167 AA--CACT--------ATGGAGAAGCTCATCAAGAAAAGGAACGTGCCACAGAAACTGTCGCCCCACAGCAAAA 2230
Query 1607 ----ATATAT-----ATACATA--------TATATATA-TATATGC-GCCACATAATCAACAGAAAGATGGGGC 1661
|.|||| |.|||.| ||..||.| ||.|||| |||..| ||...|.||||||
Sbjct 2231 GGCCAGATATTCTCAAGACAGAGTCGTTGCTACCTAAACTAGATGCAGCCCTA--------AGTGGGGTGGGGC 2296
Query 1662 --------TGTCCCAGCCGTAAG---------TCAGGCTCGAGGGAGACTG-------ATCCCC---------- 1701
||||| |||| ||| .||.||.||||.|.| |..|||
Sbjct 2297 TTCCTGGGTGTCC------TAAGGGCCCCCCTTCA-CCTGGAAGGAGTCGGCGTGGCAAGACCCGTCACCGAAA 2363
Query 1702 -------------------------------------------------------------------------- 1701
Sbjct 2364 GGCCAGTGCCAAGGGCAGCTGTGGAGACCTGCCTGGGCTTCGTGCAGCTTTGCCACCCCATGAGCCTGGAGGAC 2437
Query 1702 -------------------------------------------------------------------------- 1701
Sbjct 2438 TAGGAAGCCCAGGGGGCCTAGGAGTGGGCCCTTCAGCTTGGGATGCTTGCCCCCCTGCTCTCCGTGGACTCCAC 2511
Query 1702 -------------------------------------------------------------------------- 1701
Sbjct 2512 CATGACCTTCTACTCCGAAAGATGTCATCATCATCCCCAGACCTGCTATCAGCAGCGCTGGGAGCCCGAGGCCG 2585
Query 1702 -------------------------------------------------------------------------- 1701
Sbjct 2586 AGGGGCTACAGGGGGAGCTCGGGATCCTGGCTCACCACCTCCACCCCAGGGCGATACTCCTCCAAGTGAGGGAT 2659
Query 1702 -------------------------------------------------------------------------- 1701
Sbjct 2660 CAGCTCCTGGTTCCACCAGCCCAGATTCGCCTGGGGGAGCTAAAGGGGAACCCCCTCCACCAGTAGGGCCTGGA 2733
Query 1702 -------------------------------------------------------------------------- 1701
Sbjct 2734 GAAGGTGTGGGGCTGCTGGGAACTGGAAGGGAAGGGACTGCAGGCCGGGGAGGAAACCGGGCTGGGTCCCAGCA 2807
Query 1702 -------------------------------------------------------------------------- 1701
Sbjct 2808 CTTGACCCCCGCTGCGCTGCTGTACAGGGCTGCTGTGACTCGAAGTCAGGTAAAGTATGGGGATGTTCTTCTAC 2881
Query 1702 -------------------------------------------------------------------------- 1701
Sbjct 2882 CCCACACCAAATTAAAATCCTTTAATCTCCTCATGGGTCCAAGTGCTAACTATACCCCAACCCCACTCAACTAT 2955
Query 1702 -------------------------------------------------------------------------- 1701
Sbjct 2956 GTATCCTTGCCCAATTCTTAATGACTTACCATTTTTTGACTGGTTTACTTACACCTACCCACACCCATCTCTAC 3029
Query 1702 -------------------------------------------------------------------------- 1701
Sbjct 3030 TGTAGAAACGTGGTATCTCATCTGAAGAAGAAGAAGGAGAGGTAGACAGTGAAGTAGAGCTACCCCCAAGTCAA 3103
Query 1702 -------------------------------------------------------------------------- 1701
Sbjct 3104 AGGTGGCCTCAGGGCCCGAACATGCGTCAGTCACTATCTACATTCAGCTCAGAGAACCCATCAGATGTGGAGGA 3177
Query 1702 -------------------------------------------------------------------------- 1701
Sbjct 3178 AGGTACAGCTAGTGAGCCTTCCCCAAGTGGCACACCAGAAGTTGGCAGTACCAACACTGATGAGCGACCAGATG 3251
Query 1702 -------------------------------------------------------------------------- 1701
Sbjct 3252 AACGATCTGATGACATGTGCTCACAGGGCTCAGAAATTCCACTGGACCTACCTACTTCAGAGGTGGTCCCTGAA 3325
Query 1702 -------------------------------------------------------------------------- 1701
Sbjct 3326 CGTGAAGCCAGCTCCTTGCCCATGCAACACCAGGATGGCCAGGGCCCCAATCCTGAAGACTCAGACTGTGACAG 3399
Query 1702 -------------------------------------------------------------------------- 1701
Sbjct 3400 CACTGAATTGGACAACTCCAACAGCATTGATGCCTTGCGGCCCCCAGCCTCCCTTCCTCCATGAAAGACACTCT 3473
Query 1702 -------------------------------------------------------------------------- 1701
Sbjct 3474 TATTCCTTGTACATAGAGAAATATTTATATAAATAATATATATGCGCCACATAATCAACAGATAGATGGGGCTT 3547
Query 1702 -------------------------------------------------------------------------- 1701
Sbjct 3548 TCTTAGCCTTAAGCCAGGCTTGAGAGTGAACGACGCCCCTGACCAATTACCGAATAAGTTCTGGGGACACTGGC 3621
Query 1702 -------------------------------------------------------------------------- 1701
Sbjct 3622 AGCTGTGGAAATGAATGACTCCGAGTACTACCCTAGAGCTATAAAGAAAGGAAGCTGGCCCCTTCTTGCTTCAC 3695
Query 1702 -------------------------------------------------------------------------- 1701
Sbjct 3696 CCCATTCCTTATGTTGAACAAGCAAGTAGGCAATAGAAAAGCCAGGCTTGTCTCTATACTGTCTATCCCTGAAC 3769
Query 1702 -------------------------------------------------------------------------- 1701
Sbjct 3770 ACTGGAGGGGCAGGTAGAGGATTCACTTAAAACTGCACTTTTATTTTCCGTTTACTGTTTACACATTTTGCACT 3843
Query 1702 -------------------------------------------------------------------------- 1701
Sbjct 3844 TGGGAGGAGGGAAAGAAACTAAGGCTGGGTCATCCCTCTGAGGTTTCTCAGGTGGCAATGTAACTCATTTCTTT 3917
Query 1702 -------------------------------------------------------------------------- 1701
Sbjct 3918 GTTCCTGTTTCTCTGCCCAAACCCTGGCTTTGGGCCAGACGACTAACAGCATGTGATGGCTCAGGCTGAAGAAC 3991
Query 1702 -------------------------------------------------------------------------- 1701
Sbjct 3992 TGGGGTGCTGTTAGTCCCCACTGTTATCTTGGTGCCTGGTAGGGGTGGGGACTGTCATATTGTAACCCCTGTGA 4065
Query 1702 ------------------------------------ 1701
Sbjct 4066 ACAACCTTGAAATATAACCACTCCATGCAGGCCCAA 4101
