Nucleotide Global Alignment

Description

Query:
ccsbBroad304_14919
Subject:
XM_017315439.1
Aligned Length:
3127
Identities:
1757
Gaps:
1133

Alignment

Query    1  ATGGCCGCCGCGGAGACCCAGTCGCTACGGGAGCAGCCAGAGATGGAAGATGC---TAATTCTGAAAAGAGTAT  71
            |||||||||.|||||.|||.|||.||.||||||||..|.||||||||.|||||   ||||||||||||||||.|
Sbjct    1  ATGGCCGCCACGGAGCCCCCGTCCCTGCGGGAGCAAGCTGAGATGGATGATGCTGATAATTCTGAAAAGAGTGT  74

Query   72  AAATGAAGAAAATGGAGAAGTATCAGAAGACCAGTCTCAAAATAAGCACAGTCGTCACAAAAAAAAGAAGCATA  145
            ||||||||||||||||||.||||||||||||||.|||||||||||.||||||||||||||||||||||||||||
Sbjct   75  AAATGAAGAAAATGGAGAGGTATCAGAAGACCAATCTCAAAATAAACACAGTCGTCACAAAAAAAAGAAGCATA  148

Query  146  AACACAGAAGTAAACATAAGAAACATAAACATTCCTCAGAAGAAGACAAGGATAAAAAACATAAACATAAGCAT  219
            ||||||||||||||||||||||||||||||||||||||||||||||.|.||||||||||||.||||||||||||
Sbjct  149  AACACAGAAGTAAACATAAGAAACATAAACATTCCTCAGAAGAAGATAGGGATAAAAAACACAAACATAAGCAT  222

Query  220  AAACATAAGAAACACAAAAGAAAAGAGGTTATTGATGCTTCTGATAAAGAGGGTATGTCTCCAGCAAAAAGAAC  293
            ||.||||||||.||||||.|.|||||.|||||.||.|||||.||.|||||.||..||||.||.|||||||||||
Sbjct  223  AAGCATAAGAAGCACAAACGGAAAGAAGTTATCGAGGCTTCCGACAAAGAAGGCCTGTCCCCTGCAAAAAGAAC  296

Query  294  TAAACTTGATGATTTAGCTTTGCTAGAAGACTTGGAAAAACAGAGAGCCTTGATTAAGGCCGAACTTGATAATG  367
            |||.||||||||||||||||||||.||||||||||||||.|||||||||||||||||.||.||.||||||||||
Sbjct  297  TAAGCTTGATGATTTAGCTTTGCTGGAAGACTTGGAAAAGCAGAGAGCCTTGATTAAAGCTGAGCTTGATAATG  370

Query  368  AGTTAATGGAAGGAAAGGTCCAGTCTGGTATGGGGCTCATTTTGCAAGGTTATGAGTCTGGCTCTGAAGAAGAG  441
            ||||||||||.||.||||||||||||||.||||||||||||||||||||.||||||||||||||.||||||||.
Sbjct  371  AGTTAATGGAGGGGAAGGTCCAGTCTGGAATGGGGCTCATTTTGCAAGGCTATGAGTCTGGCTCCGAAGAAGAA  444

Query  442  GGGGAAATTCATGAAAAGGCAAGAAATGGAAATAGGTCTAGTACTAGATCTTCAAGTACAAAGGGGAAACTTGA  515
            ||.||.|||||.|||||||||||||||||.||.|||||.|||||.||.|||||.|||||...|||.||||||||
Sbjct  445  GGAGAGATTCACGAAAAGGCAAGAAATGGGAACAGGTCCAGTACCAGGTCTTCCAGTACTCGGGGAAAACTTGA  518

Query  516  ACTTGTGGACAATAAAATTACTACAAAGAAACGAAGTAAAAGCAGATCCAAAGAACGGACTAGACATAGGTCTG  589
            |.||..||||||.||||.||.|.||||||||||||||||.||||||||||||||||||||.||.||.||.||.|
Sbjct  519  AATTACGGACAACAAAAATAGTGCAAAGAAACGAAGTAAGAGCAGATCCAAAGAACGGACCAGGCACAGATCGG  592

Query  590  ATAAAAAGAAAAGTAAGGGGGGTATTGAAATCGTTAAAGAGAAAACAACTAGGAGCAAGTCAAAGGAGAGGAAA  663
            |.||||.||||||.|||||||.|...|||||..|.|.|||||||.|||..|||||||||||.||||||||||.|
Sbjct  593  ACAAAAGGAAAAGCAAGGGGGCTGGGGAAATGCTGAGAGAGAAAGCAAACAGGAGCAAGTCCAAGGAGAGGAGA  666

Query  664  AAATCTAAAAGCCCATCCAAAAGAAGTAAGTCTCAAGATCAAGCAAGGAAATCAAAATCCCCTACCCTTAGAAG  737
            |||||.||||||||||||||||||||.|||||||||||.|||||.||.||.|||||.||||||.|.||.|||.|
Sbjct  667  AAATCCAAAAGCCCATCCAAAAGAAGCAAGTCTCAAGACCAAGCTAGAAAGTCAAAGTCCCCTCCACTCAGACG  740

Query  738  GCGATCTCAAGAGAAAATTGGTAAGGCCAGATCTCCTACTGATGATAAGGGTTAAAATTGAAGATAAAAGTAAA  811
            |||.||.|||||||||.|.||.|||||||||||||||.||||.||.|| |.|.||.|.||||||.|||.|.|||
Sbjct  741  GCGGTCCCAAGAGAAAGTGGGGAAGGCCAGATCTCCTGCTGAGGAGAA-GATGAAGAGTGAAGAGAAAGGCAAA  813

Query  812  TCAAAAGATAGGAAAAAATCCCCAATTATAAATGAAAGTAGAAGTCGCGATCGAGGTAAAAAATCCAGATCCCC  885
            ..|||.||||||||||||||.||||||.||||||||   ||.|||||.|||.||..|||||||||||..|||||
Sbjct  814  ATAAAGGATAGGAAAAAATCACCAATTGTAAATGAA---AGGAGTCGAGATAGATCTAAAAAATCCAAGTCCCC  884

Query  886  AGTTGATTTAAGAGGTAAATCCAAAGACAGAAGGTCACGGTCCAAAGAGAGAAAATCAAAACGGTCTGAAACTG  959
            ||||||.|||||||.||||||||||||||||||||||.|||||||||||.|.||.||||||||.|||||||.||
Sbjct  885  AGTTGACTTAAGAGATAAATCCAAAGACAGAAGGTCAAGGTCCAAAGAGCGGAAGTCAAAACGATCTGAAATTG  958

Query  960  ATAAAGAAAAGAAGCCAATTAAATCTCCCTCTAAAGATGCTTCATCTGGGAAAGAAAATAGGTCACCCAGCAGA  1033
            |.|||||||||||||||||||||||.||.||.||.||||||||.||||||||.|||||||||||||||||.|||
Sbjct  959  ACAAAGAAAAGAAGCCAATTAAATCACCTTCAAAGGATGCTTCTTCTGGGAAGGAAAATAGGTCACCCAGTAGA  1032

Query 1034  AGACCTGGTCGTAGTCCTAAAAGAAGAAGTTTGTCTCCAAAACCACGTGATAAATCAAGAAGAAGCAGGTCTCC  1107
            ||||||||.||||||||||||||||||||||||||||||||||..||.||.||.|||||||||||.||||||||
Sbjct 1033  AGACCTGGCCGTAGTCCTAAAAGAAGAAGTTTGTCTCCAAAACTGCGAGACAAGTCAAGAAGAAGTAGGTCTCC  1106

Query 1108  ACTTTTGAATGATAGAAGATCTAAGCAGAGCAAATCCCCCTCGCGGACACTGTCTCCTGGGAGAAGAGCCAAGA  1181
            .|||.|.|||||.|||||||||||||||||||||||.||.||.||.||.||||||||.||.|||||.|||||||
Sbjct 1107  GCTTCTCAATGACAGAAGATCTAAGCAGAGCAAATCGCCTTCTCGAACTCTGTCTCCAGGCAGAAGGGCCAAGA  1180

Query 1182  GCCGATCCTTAGAAAGAAAACGACGAGAACCAGAGAGGAGACGACTTTCTTCTCCAAGAACACGACCTCGAGAT  1255
            ||||||||||||||||||||||..|||||||||||||||||||||||||||||||.||||||.|||||||||||
Sbjct 1181  GCCGATCCTTAGAAAGAAAACGGAGAGAACCAGAGAGGAGACGACTTTCTTCTCCGAGAACAAGACCTCGAGAT  1254

Query 1256  GATATCCTCAGTAGACGTGAAAGATCAAAAGATGCCAGCCCCATCAATAGATGGTCTCCAACCCGAAGAAGAAG  1329
            ||||||||..|||||.|||||.|.||||||||||||||||||||||||||.|||||||||||||||||||||||
Sbjct 1255  GATATCCTTGGTAGATGTGAACGGTCAAAAGATGCCAGCCCCATCAATAGGTGGTCTCCAACCCGAAGAAGAAG  1328

Query 1330  TAGATCTCCCATTAGAAGGAGGTCTCGTTCCCCACTCAGACGTAGCAGGTCTCCAAGAAGAAGAAGCAGATCTA  1403
            |||.|||||.||||||||||||||.|||||||||.|.|||||.|||||||||||.||||||||||||||.|||.
Sbjct 1329  TAGGTCTCCAATTAGAAGGAGGTCCCGTTCCCCATTGAGACGCAGCAGGTCTCCTAGAAGAAGAAGCAGGTCTC  1402

Query 1404  CTCGGAGAAGGGACAGAGGTCGGAGGAGCAGATCACGCTTGCGAAGGCGGTCTCGATCACGCGGTGGTCGTAGA  1477
            ||||||||||.||.||..|.||.||||||||.|||||||||.|.||..|||||||||||||.|||||||.|||.
Sbjct 1403  CTCGGAGAAGAGATAGGAGCCGAAGGAGCAGGTCACGCTTGAGGAGAAGGTCTCGATCACGGGGTGGTCATAGG  1476

Query 1478  CGAAGGAGCAGAAGCAAAGTAAAGGAAGATAAATTTAAAGGAAGTCTTTCTGAAGGAATGAAAGTTGAGCAGGA  1551
            .||||||||||||||||||||||||||||||||||||||||||||||.||.||||||||||||||||||||.||
Sbjct 1477  AGAAGGAGCAGAAGCAAAGTAAAGGAAGATAAATTTAAAGGAAGTCTCTCAGAAGGAATGAAAGTTGAGCAAGA  1550

Query 1552  ATCTTCGTCTGATGATAACCTTGAAGACTTTGATGTAGAGGAAGAAGATGAAGAAGCCCTAATAGAACAGAGAA  1625
            .|||||.||||||||||||||||||||.||||||||.|||||.|||||||||||.||.||||||||||||||||
Sbjct 1551  GTCTTCATCTGATGATAACCTTGAAGATTTTGATGTGGAGGAGGAAGATGAAGAGGCTCTAATAGAACAGAGAA  1624

Query 1626  GAATCCAAAGGCAGGCAATTGTTCAGAAATATAAATACCTTGCTGAAGATAGCAACATGTCTGTGCCATCTGAA  1699
            ||||.||.|||||.||||||||.||||||||||||||.|||||||||||||||||.||.||||||||||||||.
Sbjct 1625  GAATACAGAGGCAAGCAATTGTGCAGAAATATAAATATCTTGCTGAAGATAGCAATATATCTGTGCCATCTGAG  1698

Query 1700  CCAAGCAGCCCCCAGAGCAGTACGAGAACACGATCACCATCTCCAGATGACATTCTGGAGCGAGTAGCTGCTGA  1773
            ||||||||||||||||||||.||.|||.|||||||.||.||.|||||.|||||..||||||||||.||||||||
Sbjct 1699  CCAAGCAGCCCCCAGAGCAGCACAAGATCACGATCTCCTTCGCCAGACGACATCTTGGAGCGAGTTGCTGCTGA  1772

Query 1774  TGTTAAAGAGTATGAACGGGAAAATGTTGATACATTTGAGGCCTCAGTGAAAGCCAAGCATAATCTAATGACAG  1847
            |||.|||||.|||||.|||||.||||||||.||.||||||||||||||.|||||||||||||||||||||||||
Sbjct 1773  TGTAAAAGAATATGAGCGGGAGAATGTTGACACCTTTGAGGCCTCAGTAAAAGCCAAGCATAATCTAATGACAG  1846

Query 1848  TTGAACAGAATAATGGTTCATCTCAGAAGAAGTTGTTGGCACCTGATATGTTTACAGAATCTGATGATATGTTT  1921
            ||||||||||||||||.|||||||||||||||.|.|||||||||||.||||||||||||||||||||.||||||
Sbjct 1847  TTGAACAGAATAATGGCTCATCTCAGAAGAAGATTTTGGCACCTGACATGTTTACAGAATCTGATGACATGTTT  1920

Query 1922  GCTGCGTATTTTGAT-----------------------------------------------------------  1936
            |||||.|||||||||                                                           
Sbjct 1921  GCTGCTTATTTTGATGCTCAACCTAGTACAGCCAGTGAATGTTACTACATTTCATGCCTGTGTGGTAAGGGTAC  1994

Query 1937  -----------------------------------------------AGTGCTCGTCTTCGGGCCGCTGGCATT  1963
                                                           |||||||||||.||.||.|||||||||
Sbjct 1995  AAATGTCTCCATGGACAGGGAGGCAGAGAAGGAAATGATGCAAATCGAGTGCTCGTCTCCGAGCTGCTGGCATT  2068

Query 1964  GGAAAAGATTTCAAAGAGAATCCCAACCTCAGAGATAACTGGACCGATGCAGAAGGCTATTATCGTGTGAACAT  2037
            ||.||||||||||||||.|||||||||||||||||                                       
Sbjct 2069  GGGAAAGATTTCAAAGAAAATCCCAACCTCAGAGA---------------------------------------  2103

Query 2038  AGGTGAAGTCCTAGATAAACGTTACAATGTGTATGGCTACACTGGGCAAGGTGTATTCAGTAATGTTGTACGAG  2111
                                                                                      
Sbjct 2104  --------------------------------------------------------------------------  2103

Query 2112  CCAGAGATAATGCAAGAGCCAACCAAGAAGTGGCTGTAAAGATCATCAGAAACAATGAGCTCATGCAAAAGACT  2185
                                                                                      
Sbjct 2104  --------------------------------------------------------------------------  2103

Query 2186  GGTTTAAAAGAATTAGAGTTCTTGAAAAAACTTAATGATGCTGATCCTGATGACAAAATTCATTGTCTGAGATC  2259
                                                                                      
Sbjct 2104  --------------------------------------------------------------------------  2103

Query 2260  TTCAGGCACTCTATCACCAGCAGCATCTTGTCTGGTATTCGAGCCTCTCAGCATGAACTTACGAGAGGTGTAAA  2333
                                                                                      
Sbjct 2104  --------------------------------------------------------------------------  2103

Query 2334  AAAATATGTNAAAGATGTTGGTCTTCATATTAAGNCTGTAAGATCCTATAGTCAGCAGTTGTTCCTGGCATTGA  2407
                                                                                      
Sbjct 2104  --------------------------------------------------------------------------  2103

Query 2408  AACTCCTTAAAAGATGCAATATCNTACATGCAGATATCAAGCCAGACAATATCCTGGTTAATGAATCCAAAACT  2481
                                                                                      
Sbjct 2104  --------------------------------------------------------------------------  2103

Query 2482  ATTTTAAAGCTTTGCGATTTTGGGTCGGCTTCACATGTTGCGGATAATGACATAACACCTTATCTTGTCAGTAG  2555
                                                                                      
Sbjct 2104  --------------------------------------------------------------------------  2103

Query 2556  ATTTTATCGTGCTCCTGAAATCATTATAGGTAAAAGCTATGACTATGGTATAGATATGTGGTCTGTAGGTTGCA  2629
                                                                                      
Sbjct 2104  --------------------------------------------------------------------------  2103

Query 2630  CCTTATACGAACTCTATACTGGAAAAATTTTATTCCCTGGCAAAACCAATAACCATATGCTGAAGCTTGCAATG  2703
                                                                                      
Sbjct 2104  --------------------------------------------------------------------------  2103

Query 2704  GATCTCAAAGGAAAGATGCCAAATAAGATGATTCGAAAAGGTGTGTTCAAAGATCAGCATTTTGATCAAAATCT  2777
                                                                                      
Sbjct 2104  --------------------------------------------------------------------------  2103

Query 2778  CAACTTCATGTACATAGAAGTTGATAAAGTAACAGAGAGGGAGAAAGTTACTGTTATGAGCACCATTAATCCAA  2851
                                                                                      
Sbjct 2104  --------------------------------------------------------------------------  2103

Query 2852  CTAAGGACCTGTTGGCTGACTTGATTGGGTGCCAGAGACTTCCTGAAGACCAACGTAAGAAAGTACACCAGCTA  2925
                                                                                      
Sbjct 2104  --------------------------------------------------------------------------  2103

Query 2926  AAGGACTTGTTGGACCAGATTCTGATGTTGGACCCAGCTAAACGAATTAGCATCAACCAGGCCCTACAGCACGC  2999
                                                                                      
Sbjct 2104  --------------------------------------------------------------------------  2103

Query 3000  CTTCATCCAGGAAAAAATT  3018
                               
Sbjct 2104  -------------------  2103

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