Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_14933
- Subject:
- NM_001083321.2
- Aligned Length:
- 4476
- Identities:
- 2689
- Gaps:
- 1512
Alignment
Query 1 ATGTCCAAAGTGATCCAGAAGAAGAACCACTGGACTAGCAGGGTTCACGAATGCACCGTGAAGCGGGGACCCCA 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 GGGCGAGCTGGGGGTGACGGTGCTGGGAGGCGCGGAGCACGGGGAGTTTCCGTACGTCGGAGCGGTGGCGGCGG 148
Sbjct 1 -------------------------------------------------------------------------- 0
Query 149 TCGAGGCAGCGGGGCTTCCCGGCGGCGGCGAGGGCCCGAGGCTGGGCGAAGGGGAGCTGCTTCTGGAGGTGCAG 222
Sbjct 1 -------------------------------------------------------------------------- 0
Query 223 GGGGTCCGGGTGTCCGGCTTGCCCCGCTATGACGTGCTGGGGGTCATCGACAGCTGCAAGGAGGCCGTCACCTT 296
Sbjct 1 -------------------------------------------------------------------------- 0
Query 297 CAAGGCCGTCAGACAAGGAGGAAGGCTGAACAAGGACCTGCGACATTTTCTCAATCAGCGATTCCAGAAGGGGT 370
Sbjct 1 -------------------------------------------------------------------------- 0
Query 371 CTCCTGATCATGAGCTCCAGCAGACCATAAGGGATAACCTTTACCGCCATGCTGTGCCTTGCACAACCCGATCT 444
Sbjct 1 -------------------------------------------------------------------------- 0
Query 445 CCCAGAGAAGGAGAAGTGCCTGGCGTGGACTATAACTTTCTGACTGTGAAGGAGTTCTTGGACCTCGAGCAGAG 518
Sbjct 1 -------------------------------------------------------------------------- 0
Query 519 TGGGACTCTTCTGGAAGTCGGCACCTATGAAGGAAACTATTATGGGACACCCAAGCCTCCTAGCCAGCCAGTCA 592
Sbjct 1 -------------------------------------------------------------------------- 0
Query 593 GTGGGAAAGTGATCACGACGGATGCCTTGCACAGCCTTCAGTCTGGCTCTAAGCAGTCGACCCCGAAGCGAACC 666
Sbjct 1 -------------------------------------------------------------------------- 0
Query 667 AAGTCCTACATGATATGCAAAATGCTGGCATAGTCCACGCGGAGAATGAGGAGGAGGATGACGTTCCTGAAATG 740
||||||||||||||||||||||||.|||||||||||||||||||.||.||.|||||||||
Sbjct 1 --------------ATGCAAAATGCTGGCATAGTCCACCCGGAGAATGAGGAGGAGGAGGATGTCCCTGAAATG 60
Query 741 AACAGCAGCTTTACAGCCGATTCTGGTGAACAAGAGGAGCACACTCTCCAAGAAACAGCATTACCACCTGTGAA 814
|||||.||||||||||||||.|||||.||.||.||.||||||||||||||||||.||.|..|.||.||||||||
Sbjct 61 AACAGTAGCTTTACAGCCGACTCTGGAGACCAGGACGAGCACACTCTCCAAGAAGCAACGCTCCCGCCTGTGAA 134
Query 815 TAGTAGCATCATCGCTGCTCCCATCACGGACCCTTCTCAGAAGTTCCCTCAATACCTACCTCTTTCTGCAGAGG 888
||||||||||.||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||
Sbjct 135 TAGTAGCATCCTCGCTGCTCCCATCACGGACCCTTCTCAGAAGTTCCCTCAGTACCTACCTCTTTCTGCAGAGG 208
Query 889 ATAATTTAGGTCCTCTACCTGAAAACTGGGAGATGGCCTATACTGAAAATGGAGAAGTCTATTTTATAGACCAT 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||.
Sbjct 209 ATAATTTAGGTCCTCTACCTGAAAACTGGGAGATGGCCTATACTGAAAATGGAGAAGTCTATTTCATAGACCAC 282
Query 963 AACACGAAAACAACATCTTGGTTAGACCCTCGGTGCCTAAACAAGCAGCAGAAGCCACTGGAAGAGTGTGAAGA 1036
|||||||||||||||||.||||||||||||||||||||.|||||.|||||||||||.||||||||.||||||||
Sbjct 283 AACACGAAAACAACATCATGGTTAGACCCTCGGTGCCTGAACAAACAGCAGAAGCCTCTGGAAGAATGTGAAGA 356
Query 1037 TGATGAAGGGGTACACACCGAGGAGCTGGACAGTGAACTAGAACTGCCTGCTGGTTGGGAAAAGATTGAAGACC 1110
||||||||||||||||||||||||||||||||||||||||||..||||||||||.|||||||||||||||||||
Sbjct 357 TGATGAAGGGGTACACACCGAGGAGCTGGACAGTGAACTAGAGTTGCCTGCTGGCTGGGAAAAGATTGAAGACC 430
Query 1111 CTGTCTATGGTATCTACTATGTAGACCACATCAACAGGAAGACACAATATGAGAACCCGGTTCTAGAAGCCAAA 1184
|||||||.|||.|||||||||||||||||||||||||||||||.||||||||.|||||.||.||||||||||||
Sbjct 431 CTGTCTACGGTGTCTACTATGTAGACCACATCAACAGGAAGACGCAATATGAAAACCCAGTCCTAGAAGCCAAA 504
Query 1185 CGGAAGAAGCAGCTTGAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCA 1258
||||||||.||||||| ||||||||||||||||||||||||..||||..|.|||||
Sbjct 505 CGGAAGAAACAGCTTG------------------AACAGCAGCAGCAACAGCAGCAGCCTCAGCCACCGCAGC- 559
Query 1259 GCAGACAGAAGAATGGACAGAAGATCACTCAGCCCTTGTGCCTCCTGTTATTCCAAACCACCCTCCAAGCAATC 1332
|||||||.||||||||.|||||..||.|..||||||||||||||..|||...|||.||.||.|||||||
Sbjct 560 -----CAGAAGAGTGGACAGAGGATCATGCATCTGTTGTGCCTCCTGTTGCTCCTTCCCATCCCCCGAGCAATC 628
Query 1333 CAGAGCCAGCCAGAGAAGTTCCACTTCAGGGCAAACCCTTTTTTACACGAAACCCTTCTGAGTTGAAAGGCAAG 1406
|.|||||||||||.|||..||||||||||||||||||.|||||||||.|||||||.||||||.|||||||||||
Sbjct 629 CGGAGCCAGCCAGGGAAACTCCACTTCAGGGCAAACCTTTTTTTACAAGAAACCCCTCTGAGCTGAAAGGCAAG 702
Query 1407 TTCATTCACACAAAGCTGCGGAAAAGCAGTCGTGGCTTTGGCTTCACGGTGGTTGGAGGGGATGAACCTGATGA 1480
|||||||||||.|||||.|||||||||||.||.||||||||||||||||||||||||||.||.||.||||||||
Sbjct 703 TTCATTCACACGAAGCTACGGAAAAGCAGCCGAGGCTTTGGCTTCACGGTGGTTGGAGGAGACGAGCCTGATGA 776
Query 1481 GTTTCTCCAGATCAAGAGCTTGGTCCTAGATGGTCCTGCTGCATTGGATGGCAAGATGGAAACAGGGGATGTGA 1554
|||.||.||||||||||||.|.|||||.|||||||||||.|||.||||||||||||||||.|||||||||||.|
Sbjct 777 GTTCCTGCAGATCAAGAGCCTCGTCCTCGATGGTCCTGCCGCACTGGATGGCAAGATGGAGACAGGGGATGTAA 850
Query 1555 TTGTAAGTGTGAATGACACCTGTGTTTTGGGACACACACATGCTCAAGTTGTGAAGATCTTCCAGTCCATCCCC 1628
||||.||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||.|||
Sbjct 851 TTGTGAGTGTGAATGACACCTGTGTTTTGGGACACACACATGCTCAAGTTGTGAAAATCTTCCAGTCCATTCCC 924
Query 1629 ATTGGTGCCAGCGTGGACCTTGAACTCTGCCGAGGTTATCCATTGCCTTTTGATCCAGATGACCCCAATACAAG 1702
|||||||||||.||||||||||||||||||.||||||||||||||||||||||.||.||||||||.||||||||
Sbjct 925 ATTGGTGCCAGTGTGGACCTTGAACTCTGCAGAGGTTATCCATTGCCTTTTGACCCGGATGACCCTAATACAAG 998
Query 1703 TTTAGTGACCTCGGTAGCCATTTTGGATAAAGAACCAATTATTGTGAATGGGCAAGAGACCTATGATTCACCAG 1776
|||||||||||||||.|||||||||||.|||||||||||||||||.|||||.|||||||||||.||||||||||
Sbjct 999 TTTAGTGACCTCGGTGGCCATTTTGGACAAAGAACCAATTATTGTAAATGGACAAGAGACCTACGATTCACCAG 1072
Query 1777 CTAGCCACAGTAGTAAAACAGGCAAAGTCAATGGCATGAAGGATGCCAGGCCAAGCAGCCCAGCGGACGTGGCT 1850
|.||||||||||||||||||||||||||||...||||||||||||||||||||||||||||.||.||.||||||
Sbjct 1073 CGAGCCACAGTAGTAAAACAGGCAAAGTCAGCAGCATGAAGGATGCCAGGCCAAGCAGCCCTGCTGATGTGGCT 1146
Query 1851 TCAAATAGTTCTCATGGTTATCCTAATGACACTGTTTCTTTGGCTTCCTCCATAGCCACTCAGCCAGAACTCAT 1924
||.||.||.||||||||||||||.||.|||||.||.||.||||||||||||||||||||.||||||||.||.||
Sbjct 1147 TCCAACAGCTCTCATGGTTATCCCAACGACACAGTCTCCTTGGCTTCCTCCATAGCCACCCAGCCAGAGCTAAT 1220
Query 1925 AACTGTTCATATTGTCAAAGGGCCAATGGGCTTTGGTTTTACTATCGCAGACAGTCCTGGTGGGGGTGGCCAAA 1998
|||||||||.||.|||||||||||||||||.|||||.|||||.||||||||||||||.||||||||||||||||
Sbjct 1221 AACTGTTCACATAGTCAAAGGGCCAATGGGATTTGGCTTTACGATCGCAGACAGTCCCGGTGGGGGTGGCCAAA 1294
Query 1999 GAGTGAAACAGATTGTTGACAGCCCAAGGTGCCGAGGCCTGAAAGAAGGGGATCTCATAGTGGAAGTTAATAAG 2072
||||||||||||||||||||||.|||.|.|||.|||||||.||||||||||||||.||.|||||.||.||||||
Sbjct 1295 GAGTGAAACAGATTGTTGACAGTCCACGCTGCAGAGGCCTCAAAGAAGGGGATCTTATCGTGGAGGTGAATAAG 1368
Query 2073 AAGAACGTGCAGGCCCTAACTCACAACCAAGTGGTGGATATGCTGGTTGAGTGTCCTAAGGGAAGTGAGGTCAC 2146
|||||||||||||||||.||.|||||.|||||.||||||||||||.||||.|||||.|||||||||||||||||
Sbjct 1369 AAGAACGTGCAGGCCCTGACGCACAATCAAGTCGTGGATATGCTGATTGAATGTCCCAAGGGAAGTGAGGTCAC 1442
Query 2147 ATTGTTGGTGCAACGAGGAGGGCTGCCAGTTCCCAAGAAGAGCCCAAAGTCGCAACCACTGGAAAGGAAAGACA 2220
|.||||||||||.|||||||||||.|||||||||||||||||||||||||||||.||||||||.||||||||||
Sbjct 1443 ACTGTTGGTGCAGCGAGGAGGGCTACCAGTTCCCAAGAAGAGCCCAAAGTCGCAGCCACTGGAGAGGAAAGACA 1516
Query 2221 GCCAGAATAGTTCTCAGCACAGTGTTTCCAGCCACCGAAGCCTGCACACAGCATCCCCAAGCCACAGCACACAG 2294
||||||||||.||.||||||||.||.|||||||||||.|||||||||||.||.|||||.||||||.|||.||||
Sbjct 1517 GCCAGAATAGCTCCCAGCACAGCGTCTCCAGCCACCGGAGCCTGCACACTGCGTCCCCGAGCCACGGCATACAG 1590
Query 2295 GTGCTCCCCGAGTTCCCACCTGCAGAGGCCCAAGCTCCAGATCAAACTGACAGCTCTGGCCAGAAAAAACCAGA 2368
||||||||.||||.||.|||||||||.||||..|||||||||||.||.|||||||||||.||||||||.|||||
Sbjct 1591 GTGCTCCCTGAGTACCTACCTGCAGACGCCCCTGCTCCAGATCAGACCGACAGCTCTGGGCAGAAAAAGCCAGA 1664
Query 2369 TCCTTTTAAAATCTGGGCCCAGTCCAGGAGCATGTATGAAAACCGAC--------------------------- 2415
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1665 TCCTTTTAAAATCTGGGCCCAGTCCAGGAGCATGTATGAAAACCGACCTATGTCACCTTCGCCTGCATCAGGAT 1738
Query 2416 ---------------------------------------------------------TTCCAGATTACCAGGAA 2432
|||||||||||||||||
Sbjct 1739 TGAGCAAGGGTGAAAGAGACAGAGAAATCAATTCCACGAATTTTGGAGAATGTCAGATTCCAGATTACCAGGAA 1812
Query 2433 CAGGACATCTTCCTCTGGAGAAAAGAGACTGGATTTGGATTTAGGATTCTGGGTGGAAATGAACCAGGGGAACC 2506
||||||||||||||||||||||||||.||.||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1813 CAGGACATCTTCCTCTGGAGAAAAGAAACCGGATTTGGATTTAGGATTCTGGGTGGAAATGAACCAGGGGAACC 1886
Query 2507 TATTTATATTGGTCACATCGTACCACTGGGTGCTGCTGATACTGACGGCCGCCTGAGGTCTGGAGATGAATTAA 2580
.||||||||.||||||||||||||.||||||||||||||.||.|||||||||||||||||||||||||||||||
Sbjct 1887 CATTTATATCGGTCACATCGTACCGCTGGGTGCTGCTGACACAGACGGCCGCCTGAGGTCTGGAGATGAATTAA 1960
Query 2581 TCTGTGTGGATGGGACGCCAGTAATTGGAAAATCACACCAGCTTGTGGTCCAGCTTATGCAACAAGCTGCCAAG 2654
||||||||||||||||.|||||||||||.||||||||||||||.||||||||||||||||||||||||||||||
Sbjct 1961 TCTGTGTGGATGGGACACCAGTAATTGGGAAATCACACCAGCTCGTGGTCCAGCTTATGCAACAAGCTGCCAAG 2034
Query 2655 CAAGGCCACGTCAATCTCACGGTGCGGCGTAAAGTGGTTTTTGCGGTGCCCAAAACCGAGAACGAGGTGCCCTC 2728
||||||||.|||||||||||.|||.||||.||||||||.|||||.||.||||||.|.|||||.|||||||||||
Sbjct 2035 CAAGGCCATGTCAATCTCACAGTGAGGCGGAAAGTGGTCTTTGCCGTCCCCAAAGCAGAGAATGAGGTGCCCTC 2108
Query 2729 GCCAGCCTCCTCTCATCACAGTAGCAACCAGCCGGCCTCGCTGACAGAAGAGAAGCGCACTCCGCAGGGCAGCC 2802
.||||||||.||.||.|||||||||||||||||.||.||.|||||.||.|||||.|||||.|||||.|||||||
Sbjct 2109 ACCAGCCTCATCACACCACAGTAGCAACCAGCCCGCGTCCCTGACGGAGGAGAAACGCACACCGCAAGGCAGCC 2182
Query 2803 AGAACTCGCTGAACACGGTGAGCTCGGGCAGCGGCAGCACCAGCGGCATCGGCAGTGGCGGCGGCGGGGGCAGC 2876
|||||||.||||||||.||||||||.|||||||||||||||||.|||||.||||||||.|||||||||||||||
Sbjct 2183 AGAACTCTCTGAACACTGTGAGCTCTGGCAGCGGCAGCACCAGTGGCATTGGCAGTGGTGGCGGCGGGGGCAGC 2256
Query 2877 GGCGTGGTCAGCACCGTGGTGCAGCCCTACGACGTGGAGATCCGGCGCGGGGAGAACGAGGGCTTCGGCTTCGT 2950
||.|||||.|||.|.|||.||||||||||.||.||||||||.|||||.|||||||||||||||||.||.||.||
Sbjct 2257 GGTGTGGTGAGCGCTGTGCTGCAGCCCTATGATGTGGAGATTCGGCGTGGGGAGAACGAGGGCTTTGGGTTTGT 2330
Query 2951 CATCGTGTCCTCGGTGAGCAGGCCCGAAGCAGGCACGACCTTTGGCAATGCATGTGTGGCTATGCCTCACAAAA 3024
||||||||||||.||||||||.||||||||.|||||.|||||.|||||||||||||||||||||||||||||||
Sbjct 2331 CATCGTGTCCTCCGTGAGCAGACCCGAAGCGGGCACAACCTTCGGCAATGCATGTGTGGCTATGCCTCACAAAA 2404
Query 3025 TAGGTCGGATTATTGAGGGGAGCCCTGCTGACCGCTGTGGCAAGCTGAAAGTAGGAGACCGGATCTTGGCAGTA 3098
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2405 TAGGTCGGATTATTGAGGGGAGCCCTGCTGACCGCTGTGGCAAGCTGAAAGTAGGAGACCGGATCTTGGCAGTA 2478
Query 3099 AATGGATGTTCCATCACCAACAAATCCCATTCAGACATTGTGAACCTAATCAAGGAAGCGGGAAACACAGTTAC 3172
||||||||||||||||||||||||||||||||.||||||||.|||||||||||.||||||||.||||||||.||
Sbjct 2479 AATGGATGTTCCATCACCAACAAATCCCATTCTGACATTGTCAACCTAATCAAAGAAGCGGGCAACACAGTGAC 2552
Query 3173 CCTCCGCATCATTCCTGGGGATGAGTCCTCGAATGCCACCTTGCTGACCAATGCAGAGAAGATTGCCACCATCA 3246
.|||||||||||.||.||||||||||||||.||||||||..|||||||.|||||.|||||||||||||||||||
Sbjct 2553 TCTCCGCATCATCCCCGGGGATGAGTCCTCAAATGCCACGCTGCTGACTAATGCTGAGAAGATTGCCACCATCA 2626
Query 3247 CCACCACACACACCCCTTCTCAGCAAGGGACCCAGGAGACAAGGAATACCACCAAACCAAAGCAGGAATCTCAA 3320
|||||||.||..||||.||||||||.|||||||||||.|||||||..||||||||||||||||||||.|||||.
Sbjct 2627 CCACCACTCATGCCCCCTCTCAGCAGGGGACCCAGGAAACAAGGACCACCACCAAACCAAAGCAGGATTCTCAG 2700
Query 3321 TTTGAGTTCAAAGCACCCCAAGCAACACAGGAGCAAGATTTTTACACTGTGGAACTGGAAAGAGGAGCCAAGGG 3394
|||||||||||||.|||.||.||..||||||||||||||||.||||||||||||.||||||||||.||||||||
Sbjct 2701 TTTGAGTTCAAAGGACCGCAGGCTGCACAGGAGCAAGATTTCTACACTGTGGAATTGGAAAGAGGGGCCAAGGG 2774
Query 3395 ATTTGGCTTTAGCCTTCGAGGAGGCCGAGAGTATAACATGGACCTCTATGTTCTGCGCTTAGCAGAGGACGGTC 3468
||||||||||||.||||||||.||||||||.|||||||||||.||.||||||||||||||.||||||||.||||
Sbjct 2775 ATTTGGCTTTAGTCTTCGAGGGGGCCGAGAATATAACATGGATCTTTATGTTCTGCGCTTGGCAGAGGATGGTC 2848
Query 3469 CTGCGGAGAGGTGTGGAAAGATGAGGATTGGTGATGAAATTTTAGAGATCAATGGTGAGACCACCAAAAACATG 3542
||||.||.||.|||||.||||||||||||||.|||||||||.||||||||||||||||||||||||||||||||
Sbjct 2849 CTGCAGAAAGATGTGGGAAGATGAGGATTGGCGATGAAATTCTAGAGATCAATGGTGAGACCACCAAAAACATG 2922
Query 3543 AAGCATTCTCGAGCTATAGAACTGATTAAGAATGGTGGCCGCAGAGTTCGTCTGTTTCTGAAGCGGGGAGACGG 3616
||.||.|||||.||.|||||||||||.||||||||.||||||||.||.||||||||||||..||||||||||||
Sbjct 2923 AAACACTCTCGGGCCATAGAACTGATCAAGAATGGCGGCCGCAGGGTCCGTCTGTTTCTGCGGCGGGGAGACGG 2996
Query 3617 CTCAGTACCAGATTATGACCCCAGCAGCGACCGCCACGGCCCCGCCACCGGTCCACAAGGTGTTCCGAAGTGAG 3690
||||||.|||||.|||| |.| ||| |||..|.| |||
Sbjct 2997 CTCAGTCCCAGAATATG---------GTG--------------------GGT---CAAACTAT---GAA----- 3030
Query 3691 GCCGGGCCGACCGCGGCAGCATC------------GTCATTGGAGTCCAGTTACCCACCCGATCTTCACAAATC 3752
|.|||| |.||| ||.||||
Sbjct 3031 -----------------AACATCCCTTCCTTCCCTGGCAT--GACTCCA------------------------- 3060
Query 3753 ATCACCACATGGGGAAAAGCGGGCACACGCAAGGGATCCGAAAGGCAGCAGAGAGTATAGCAGACAACCCAATG 3826
Sbjct 3061 -------------------------------------------------------------------------- 3060
Query 3827 AACACCACACCTGGAATGGGACTTCGAGGAAACCCGACAGCGGGGCATGCCGACCCAAGGACCGGGCGCCGGAG 3900
Sbjct 3061 -------------------------------------------------------------------------- 3060
Query 3901 GGACGGAGGGACGCGCAGGCCGAGCGCGCGGCAGCCGCCAACGGCCCCAAGAGGCGGTCCCCAGAGAAGCGGAG 3974
Sbjct 3061 -------------------------------------------------------------------------- 3060
Query 3975 GGAGGGCACCCGCAGCGCCGACAACACTTTGGAGAGGAGGGAGAAGCACGAGAAGAGACGAGACGTCTCTCCGG 4048
Sbjct 3061 -------------------------------------------------------------------------- 3060
Query 4049 AGCGGAGGCGAGAGCGGTCACCCACCCGCAGGAGAGACGGCTCCCCCAGCCGGCGGAGACGGTCTCTGGAGAGA 4122
Sbjct 3061 -------------------------------------------------------------------------- 3060
Query 4123 CTCCTGGAGCAGAGGAGGTCCCCCGAGCGCAGGAGAGGGGGCTCGCCCGAGCGCAGGGCCAAGTCCACCGACCG 4196
Sbjct 3061 -------------------------------------------------------------------------- 3060
Query 4197 GAGGCGCGCACGCTCCCCCGAGCGCAGGAGAGAGCGGTCCCTGGACAAAAGGAACAGAGAGGACAGAGCCAGCC 4270
Sbjct 3061 -------------------------------------------------------------------------- 3060
Query 4271 ACCGAGAAAGGGAAGAGGCGAATCTGAAACAGGATGCCGGCAGAAGTTCCAGACATCCCCCGGAGCAGAGAAGG 4344
Sbjct 3061 -------------------------------------------------------------------------- 3060
Query 4345 CGACCTTACAAAGAATGTAGCACCGACCTCAGTATC 4380
Sbjct 3061 ------------------------------------ 3060
