Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_14983
- Subject:
- NR_104098.2
- Aligned Length:
- 2461
- Identities:
- 1328
- Gaps:
- 890
Alignment
Query 1 ---------------------------------------ATGACCCTCACCCTCTCAGTCCTGATTTGCCTCGG 35
|||||||.|||||||.|||.||||.|.|||||.||
Sbjct 1 ATCCCTCTGCAGAGCCCGGGGTCACCAGGAGGAGACGCCATGACCCCCACCCTCGCAGCCCTGCTCTGCCTAGG 74
Query 36 GCTGAGTGTGGGCCCCAGGACCTGCGTGCAGGCAGGCACCCTCCCCAAACCCACCCTCTGGGCTGAGCCAGCCT 109
|||||||.||||||||||||||..||||||||||||..||.||||||||||||||||||||||||||||||.||
Sbjct 75 GCTGAGTCTGGGCCCCAGGACCCACGTGCAGGCAGGGCCCTTCCCCAAACCCACCCTCTGGGCTGAGCCAGGCT 148
Query 110 CTGTGAT-AGCTCGGGGGAAGCCCGTGACCCTCTGGTGTCAGGGGCCCCTGGAGACTGAGGAGTACCGTCTGGA 182
||||||| |||| ||||||..|||||||||.||||||||||||||..|||||||.|..||||||||||.|||||
Sbjct 149 CTGTGATCAGCT-GGGGGAGCCCCGTGACCATCTGGTGTCAGGGGAGCCTGGAGGCCCAGGAGTACCGACTGGA 221
Query 183 TAAGGAGGGACTCCCATGGGCCC-GGAAGAGACAGAACCCACTGGAGCCTGGAGC-----CAAGGCCAAGTTCC 250
|||.||||||..|||| |.|||| ||.|.|||.|.|||||||||||.|| | ||||||||..|||.
Sbjct 222 TAAAGAGGGAAGCCCA-GAGCCCTGGGACAGAAATAACCCACTGGAACC-----CAAGAACAAGGCCAGATTCT 289
Query 251 ACATTCCATCCACGGTGTATGACAG-------TGCAGGGCGATACCGCTGCTACTATGAGACCCCTGCAGGCTG 317
.|||.|||||| ||.|||| |||.|||.|||||||||||.|||||.|.|.|.||||||||||
Sbjct 290 CCATCCCATCC-------ATAACAGAGCACCATGCGGGGAGATACCGCTGCCACTATTACAGCTCTGCAGGCTG 356
Query 318 GTCAGAGCCCAGTGACCCCCTGGAGCTGGTGGCGACAGGATTCTAT-GCAGAACCCACTCTTTTAGCCCTGCCG 390
||||||||||||.||||||||||||||||||..|||||||..|||| ||| |||||||.||.|.|||||||||.
Sbjct 357 GTCAGAGCCCAGCGACCCCCTGGAGCTGGTGATGACAGGAGCCTATAGCA-AACCCACCCTCTCAGCCCTGCCC 429
Query 391 AGTCCTGTGGTGGCCTCAGGAGGAAATGTGACCCTCCAGTGTGATACACTGGACGGACTTCTCAC--GTTTGTT 462
||.|||||||||||||||||.||.|||.||||||||||.||||...|||.|.|.||| |.|||| .||||||
Sbjct 430 AGCCCTGTGGTGGCCTCAGGGGGGAATATGACCCTCCAATGTGGCTCACAGAAGGGA--TATCACCATTTTGTT 501
Query 463 CTTGTTG-AGGA---AGAACAGAAGCTCCCCAGGACCCTGTACTCACAGAAGCTCCCCAAAGGGCCATCCCAGG 532
| ||.|| |||| ||||||..||||||||.||||||||.||||||||.||||||.||..|||...|.|||||
Sbjct 502 C-TGATGAAGGAAGGAGAACACCAGCTCCCCCGGACCCTGGACTCACAGCAGCTCCACAGTGGGGGGTTCCAGG 574
Query 533 CCCTGTTCCCTGTGGGTCCCGTGACCCCCAGCTGCAGGTGGAGGTTCAGATGCTATTACTATTACAGGAAAAAC 606
||||||||||||||||.|||||||.|||||||
Sbjct 575 CCCTGTTCCCTGTGGGCCCCGTGAACCCCAGC------------------------------------------ 606
Query 607 CCTCAGGTGTGGTCGAACCCCAGTGACCTCCTGGAGATTCTGGTCCCAGGCGTGTCTAGGAAGCCCTCCCTCCT 680
|.||||||||||||||||||||||||||||
Sbjct 607 --------------------------------------------CACAGGCGTGTCTAGGAAGCCCTCCCTCCT 636
Query 681 GATCCCGCAGGGCTCTGTCGTGGCCCGCGGAGGC--AGCCTGACCCTGCAGTGTCGCTCTGATGTCGGCTATGA 752
||.||.|||||||.|||||.||||||..| ||| |||||||||||.||||||.||||||||||||||||.||
Sbjct 637 GACCCTGCAGGGCCCTGTCCTGGCCCCTG--GGCAGAGCCTGACCCTCCAGTGTGGCTCTGATGTCGGCTACGA 708
Query 753 CATATTCGTTCTGTACAAGGAGGGGGAACATGACCTCGTCCAGGGCTCTGGCCAGCAGCCCCAGGCTGGGCTCT 826
||.|||.||||||||.|||||||||||||.||||.||.|||||.||.|||||||||||||||||||||||||||
Sbjct 709 CAGATTTGTTCTGTATAAGGAGGGGGAACGTGACTTCCTCCAGCGCCCTGGCCAGCAGCCCCAGGCTGGGCTCT 782
Query 827 CCCAGGCCAACTTCACCCTGGGCCCTGTGAGCCGCTCCCACGGGGGCCAGTACAGATGCTACGGTGCACACAAC 900
|||||||||||||||||||||||||||||||||.|||||||||||||||||||||.|||||.||||||||||||
Sbjct 783 CCCAGGCCAACTTCACCCTGGGCCCTGTGAGCCCCTCCCACGGGGGCCAGTACAGGTGCTATGGTGCACACAAC 856
Query 901 CTCTCC-CCTAGGTGGTCGGCCCCCAGCGACCCCCTGGCCATCCTGATCGCAGGACTGATCCCTGACATACCCG 973
|||||| ||.| |||||||||||||||||||||||||..|||||||||.|||||||.||||..||||| |||
Sbjct 857 CTCTCCTCCGA-GTGGTCGGCCCCCAGCGACCCCCTGAACATCCTGATGGCAGGACAGATCTATGACA---CCG 926
Query 974 ---CCCTCTCGGTGCAGCCGGGCCCCAAGGTGGCCTCAGGAGAGAACGTGACCCTGCTGTGTCAGTCATGGCAT 1044
||||.||.|..|||||||||||||..||||||||||||||||||||||||||||||||||||||||||...
Sbjct 927 TCTCCCTGTCAGCACAGCCGGGCCCCACAGTGGCCTCAGGAGAGAACGTGACCCTGCTGTGTCAGTCATGGTGG 1000
Query 1045 CAGATAGACACTTTCTTTTTGACCAAGGAGGGGGCAGCCCATCCCCCGCTGTGTCTAAAGTCAAAGTAC-CAGT 1117
|||.|.|||||||||.||.|||||||.||.|||||||||||||||||.|||.||||.|..||||.|||| .||
Sbjct 1001 CAGTTTGACACTTTCCTTCTGACCAAAGAAGGGGCAGCCCATCCCCCACTGCGTCTGAGATCAATGTACGGAG- 1073
Query 1118 CTTATAGACACCAGGCTGAATTCTCCATGAGTCCTGTGACCTCAGCCCAGGGTGGAACCTACCGATGCTACAGC 1191
||.|||...||||||||||||||.|||||||||||||||||||||||||.|..||.||||||.|.||||||.||
Sbjct 1074 CTCATAAGTACCAGGCTGAATTCCCCATGAGTCCTGTGACCTCAGCCCACGCGGGGACCTACAGGTGCTACGGC 1147
Query 1192 GCAATCAGGTCCTACCCCTACCTGCTGTCCAGCCCTAGTTACCCCCAGGAGCTCGTGGTCTCAGGACCCTCTGG 1265
.||..|||.|||.|||||.||||||||||...|||.|||.|.||||.|||.|||.||||||||||||.||||||
Sbjct 1148 TCATACAGCTCCAACCCCCACCTGCTGTCTTTCCCCAGTGAGCCCCTGGAACTCATGGTCTCAGGACACTCTGG 1221
Query 1266 -GGATCCCAGCCTCTCACCTACAGGCTCCACCC-CCACACCTGGCCCTGAGGACCAGCCCCTCAC-CCCCACGG 1336
||.| ||||||||.||||.||||| .||.||| ||||||||| |||||| |.|||.||
Sbjct 1222 AGGCT-CCAGCCTCCCACCCACAGG-GCCGCCCTCCACACCTG----------------CCTCACACGCCAAGG 1277
Query 1337 GGTTGGATCCCCAGAGTGG----TCTGGGAAGGCA----CCTGGGGGTTGTGACTGGGGTCTCAGTGGC---CT 1399
..| .||.||||| ||| || |.|||| || |||| ||
Sbjct 1278 ATT-------ACACAGTGGAGAATCT-------CATCCGCATGGG-----------------CA-TGGCAGGCT 1319
Query 1400 TCGTCCTGCTGCTGTTCCTC------CTCCTCTTCCTCCTCCTCCG-ACATCGGCATCAGAGCAAACAC----- 1461
|.||| |||.|||||||| ||..|.|| |....|||.| |||.| ||||| ||||.|
Sbjct 1320 TGGTC---CTGGTGTTCCTCGGGATTCTGTTATT--TGAGGCTCAGCACAGC-----CAGAG-AAACCCCCAAG 1382
Query 1462 -----------AGG---ACATCGG-------------CCCATTTCTACCGTCCTGCAGGGGCTGCGGGGCCA-- 1506
||| |||.||| ||| ||| |.|| ||..||.||..|.|||.||
Sbjct 1383 ATGCAGCCGGGAGGTGAACAGCGGAGAGGACAATGCACCC--TTC-AGCG---TGGTGGAGCCTCAGGGACAGA 1450
Query 1507 ------GAGCCCA-----------AGGA----CCAGGGCCTGCAGAAGAGGG-------CCAGCCCA------- 1545
||.|||| |||| |.|||.|||.||||.|.||| .|||.|||
Sbjct 1451 TCTGATGATCCCAGAAGGCTCTGGAGGACAATCTAGGACCTCCAGAGGGGGGTGAGATTTCAGGCCACACACTG 1524
Query 1546 ----------------------------------GTT---GCTGA-CAT-CCAGGAGG---------AAATTCT 1571
||| .|||| .|| |||||||| |||.|||
Sbjct 1525 TGGAAGCTTGTATGGCAGTCTCCCACCCTCATGTGTTCAATCTGATGATCCCAGGAGGTTCTGGAACAAAATCT 1598
Query 1572 -----CAATG-------------CTGCCG--------TGAAGGACACACAGCCCAA-----GGACGGGGTGGAG 1614
|.||| |||.|| ||||| |.|..|..||| .||||||||
Sbjct 1599 ACAGCCTATGCTTTCTGGACTATCTGTCGATCATTCCTGAAG---AGAGGGATCAATGTTGAGACGGGGT---- 1665
Query 1615 AT------GGATGCTCGGGCTG-----------CTGCATCTGAAG-----CCCCC------------------- 1647
| .|.|||||.||||| ||| |.|| ||| ||.||
Sbjct 1666 -TTCACCATGTTGCTCTGGCTGGTCTCGAACTCCTG-ACCT-AAGGTGATCCACCAGCGTCGGCTTTCCATAGT 1736
Query 1648 ----------CAGGATGTGA---CCTACGCCCAGC------------------------------TACACAGCT 1678
|||| ||||| .|||.|||..|| |.||.|.||
Sbjct 1737 GCTGGGATTACAGG-TGTGAGCCACTATGCCTGGCCAACTTTTATAATTTCTGTGCTGGGAACATTCCAAATCT 1809
Query 1679 TGA-----CCCTCAGACGGGA-------------------------GG-----CAACTGAGCCTCCTCCATCCC 1717
|.| |.||||...||.| || |.||||||| ||.|
Sbjct 1810 TCATTTCTCACTCATGTGGAAAATACAATAATCTGTTGCTAACTATGGTCACCCTACTGAGC--------TCTC 1875
Query 1718 AGGAAAGGGAAC-----------CTCCAGCTGAA---------------CCCAGCATCTACGCC-CCCCTGGCC 1764
|||....||||| |||||.|||.| .|||.|.||| |.|| .|||||.||
Sbjct 1876 AGGCCCTGGAACTTACTCCTTCTCTCCACCTGTATTTCTGCACCCGTCCACCAACCTCT-CTCCATCCCTGTCC 1948
Query 1765 ATCCAC-------------------------------------------------------------------- 1770
|||||
Sbjct 1949 -TCCACACTCCCTTGCCAGCCTCTGTTGACAACCATTCTACTCTCTGCCATCACAAGGCCCACTTTTGTAGCTT 2021
Query 1771 -------------------------------------------------------------------------- 1770
Sbjct 2022 CCGCGTGAGTGAGAACATGCTCCTCTTTCTGGGCCTGGCTTATTTCACTGAACATAATGTCTTCCAGATTCATC 2095
Query 1771 -------------------------------------------------------------------------- 1770
Sbjct 2096 TGTGTTGCTGAACATGGTACAATTTCCTTCTTTTTATGCCTGAATATTATTTCATTGTGTATATAGACCACATG 2169
Query 1771 -------------------------------------------------------------------------- 1770
Sbjct 2170 TTCCTTATCCATTCATCCATTGATGGACATAGGTTGATTCCATATCTTGGCTATTGTGAATACTGCTGCAATAA 2243
Query 1771 ------------------- 1770
Sbjct 2244 ACATGGCAATGCAGACACC 2262
