Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_15083
- Subject:
- XR_245462.2
- Aligned Length:
- 3961
- Identities:
- 945
- Gaps:
- 2937
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CCGCCCTAGCCGAGGATGCTGAGGATGAAGCTGCCGCTGAAGCCAACGCACCCCGCGGAGCCGCCGCCCGAGGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGAGGAGCCCGAGGCGGACGCGCGGCCGGGCGCGAAGGCGCCTTCGCGCCGCCGCCGCGACTGCCGCCCCCCGC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CGCCGCCGCCGCCGCCCGCGGGCCCGTCGCGGGGCCCTCTGCCGCCGCCGCCGCCGCCCCGGGGACTCGGGCCG 222
Query 1 ---------------------------------ATGCCGGGCGGCGGCGGG-----CTTGGCGGCGCTGCGCGA 36
|||||||||||||||||| ||.|||||||||||||||
Sbjct 223 CCTGTTGCTGGTGGAGCGGCGGCGGGGGCGGGTATGCCGGGCGGCGGCGGGGGGCCCTCGGCGGCGCTGCGCGA 296
Query 37 GCAGGAGCGGGTATACGAGTGGTTCGGGCTGGTGCTGGGCTCGGCGCAGCGCCTGGAGTTCATGTGCGGGCTGC 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GCAGGAGCGGGTATACGAGTGGTTCGGGCTGGTGCTGGGCTCGGCGCAGCGCCTGGAGTTCATGTGCGGGCTGC 370
Query 111 TGGACCTGTGCAACCCGCTGGAGCTGCGCTTCCTTGGCTCGTGCCTGGAGGACCTGGCGCGCAAGGACTACCAC 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 TGGACCTGTGCAACCCGCTGGAGCTGCGCTTCCTTGGCTCGTGCCTGGAGGACCTGGCGCGCAAGGACTACCAC 444
Query 185 TACCTGCGCGACTCGGAGGCCAAGGCCAACGGCCTCTCGGACCCGGGGCCGCTGGCCGACTTCCGAGAGCCCGC 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 TACCTGCGCGACTCGGAGGCCAAGGCCAACGGCCTCTCGGACCCGGGGCCGCTGGCCGACTTCCGAGAGCCCGC 518
Query 259 GGTGCGCTCGCGCCTCATCGTCTACCTGGCGCTGCTGGGCTCGGAGAACCGGGAGGCCGCTGGCCGTCTGCACC 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GGTGCGCTCGCGCCTCATCGTCTACCTGGCGCTGCTGGGCTCGGAGAACCGGGAGGCCGCTGGCCGTCTGCACC 592
Query 333 GCCTGCTACCCCAGGTGGACTCGGTGCTCAAAAGCCTGCGCGCGGCCCGGGGCGAGGGCTCGCGGGGCGGCGCG 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GCCTGCTACCCCAGGTGGACTCGGTGCTCAAAAGCCTGCGCGCGGCCCGGGGCGAGGGCTCGCGGGGCGGCGCG 666
Query 407 GAGGACGAGCGCGGCGAGGACGGCGACGGCGAGCAGGACGCCGAGAAGGACGGCTCAGGCCCGGAAGGCGGCAT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GAGGACGAGCGCGGCGAGGACGGCGACGGCGAGCAGGACGCCGAGAAGGACGGCTCAGGCCCGGAAGGCGGCAT 740
Query 481 TGTGGAGCCGCCGGG-CGGCGGCGGGCTTGGCTCCAGGGCCCAGGAGGAACTGCTGCTGCTCTTCACCATGGCC 553
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 TGTGGAGCC-CCGGGTCGGCGGCGGGCTTGGCTCCAGGGCCCAGGAGGAACTGCTGCTGCTCTTCACCATGGCC 813
Query 554 TCGCTGCACCCGGCTTTCTCCTTCCACCAGCGGGTCACCCTGAGGGAACACTTGGAGAGGCTCCGCGCCGCGCT 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 814 TCGCTGCACCCGGCTTTCTCCTTCCACCAGCGGGTCACCCTGAGGGAACACTTGGAGAGGCTCCGCGCCGCGCT 887
Query 628 CCGCGGGGGCCCCGAGGACGCGGAGGTGGAGGTAGAGCCGTGCAAGTTTGCCGGCCCCAGGGCCCAGGTAAGGC 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 CCGCGGGGGCCCCGAGGACGCGGAGGTGGAGGTAGAGCCGTGCAAGTTTGCCGGCCCCAGGGCCCA-------- 953
Query 702 GCACGGAGCCTCCCTGGACTCGCGGTG----------------CGATCGCTGC--------------------- 738
||.|..|.||| |||..|||| |||..||.||
Sbjct 954 -----GAACAACTCTG--CTCATGGTGATTACATGCAAAATAACGAGAGCAGCTTAATAGAGCAAGCTCCAATA 1020
Query 739 ---CCCGGCGGCCTCCCCG----GCCTC-----GCTC-TCG-GACG-----CCCCTTG---------------- 777
|..|.|||.||..||| .|||| |||| .|| ||.| |.|.|||
Sbjct 1021 CCTCAGGACGGACTTACCGTGGCACCTCACAGAGCTCAGCGAGAAGCTGTACACATTGAGAAGATAATGTTGAA 1094
Query 778 ------CCCGAGCCCCAGCCCGGCGCAGGTG------GCTCGGA--------------------------ATC- 812
||.|||....|| ||.|| .||.||| |||
Sbjct 1095 AGGAGTCCAGAGAAAAAG--------AGCTGACAAATACTGGGAGTACACTTTCAAAGTAAATTGGTCTGATCT 1160
Query 813 -----------------------CCCACC--------------------CGGCAGCTCCCAGCGCCAGAGGG-- 841
|||||| |.|.||||.||| |.||
Sbjct 1161 TTCAGTCACAACAGTAACAAAAACCCACCAAGAACTACAGGAATTTCTACTGAAGCTTCCA-------AAGGAA 1227
Query 842 -------CTGAG-CTT----------CGTCT------CGCTG-----GGCCGCTCCGTTCC------------- 873
|.||| ||| |.||| |.||| || |||||
Sbjct 1228 CTGTCTTCAGAGACTTTTGACAAGACCATCTTAAGAGCCCTGAATCAGG-------GTTCCTTGAAAAGGGAGG 1294
Query 874 -ACTCCCCCACCCCACCCCACACCCC-------GGCAG------------------------------------ 903
||..|..||.||...||.|.|.||| |||||
Sbjct 1295 AACGGCGACATCCTGACCTAGAGCCCATCCTAAGGCAGCTATTTTCAAGTTCATCACAAGCTTTTCTACAAAGT 1368
Query 904 --------ACACAGC----------------CACCCG----CCATCACAG--------------AATGCTCT-- 933
||||||| ||.|.| ||..||||| |||.||||
Sbjct 1369 CAGAAAGTACACAGCTTCTTTCAGTCCATATCATCAGACTCCCTACACAGTATCAATAACTTACAATCCTCTCT 1442
Query 934 ------------------------------AGAAGTC---------CCTTC-CGTGCCACG--------GTGTT 959
|||||.| .|||| .|| ||.| |||||
Sbjct 1443 GAAGACTTCTAAGATATTAGAACACTTAAAAGAAGACAGCTCTGAAGCTTCAAGT--CAAGAAGAAGATGTGTT 1514
Query 960 G--------------CCACGGAAGACG-----TGG----AGCTCCC---------------------------- 982
| |||| ||||.| ||| || ||||
Sbjct 1515 GCAGCATGCCATAATCCAC--AAGAAGCATACTGGGAAAAG-TCCCATTGTGAACAATATTGGTACAAGTTGTT 1585
Query 983 CGCC-----CGGGGC---CCCT------CTCGGA--GGAA---AAGTGTCGGGACGTTTTTG-----------G 1026
|.|| ..|||| ||.| .||.|| .||| ||.||| ||| ||| |
Sbjct 1586 CTCCATTGGATGGGCTTACCATGCAATATTCTGAACAGAATGGAATTGT--GGA-----TTGGAGGAAGCAAAG 1652
Query 1027 CTCT--GAGCAT------CTCAGCGCTCGGTGCGGGAGCCGCGGGGCGCTG--GAGGAACCTG-TG-------- 1081
||.| .|.||| |.|||.||.|.|||.| .||.|| |||| .||.|..||| ||
Sbjct 1653 CTGTACCACCATTCAACACCCAGAGCACTGTGTG---ACCTCG----GCTGACCAGCATTCTGCTGAAAAACGG 1719
Query 1082 -------------------------------------------------------------------------- 1081
Sbjct 1720 AGTTTATCTTCAATAAATAAGAAGAAAGGAAAGCCACAAACAGAAAAGGAGAAAATTAAGAAAACTGACAACAG 1793
Query 1082 -------------------------------------------------------------------------- 1081
Sbjct 1794 ATTGAATAGTAGAATAAATGGTATTAGACTCTCCACTCCTCAGCATGCCCATGGTGGTACTGTGAAAGATGTGA 1867
Query 1082 -------------------------------------------------------------------------- 1081
Sbjct 1868 ATTTGGACATTGGCTCTGGACATGACACATGTGGAGAAACATCTTCAGAGAGTTACAGTTCTCCATCTAGTCCC 1941
Query 1082 -------------------------------------------------------------------------- 1081
Sbjct 1942 CGACATGATGGAAGAGAAAGTTTTGAAAGTGAAGAAGAGAAAGACAGAGACACAGACAGCAATTCTGAGGATTC 2015
Query 1082 -------------------------------------------------------------------------- 1081
Sbjct 2016 TGGGAATCCATCAACAACTAGGTTTACAGGTTACGGTTCTGTCAACCAGACTGTCACTGTCAAGCCACCTGTTC 2089
Query 1082 -------------------------------------------------------------------------- 1081
Sbjct 2090 AAATTGCTTCACTAGGAAATGAGAATGGAAACCTTTTAGAAGATCCCTTAAACTCACCCAAGTATCAGCATATT 2163
Query 1082 -------------------------------------------------------------------------- 1081
Sbjct 2164 TCTTTTATGCCAACGTTACACTGTGTCATGCACAATGGTGCCCAGAAGTCTGAAGTTGTCGTTCCTGCACCCAA 2237
Query 1082 -------------------------------------------------------------------------- 1081
Sbjct 2238 ACCCGCTGATGGCAAAACCATAGGGATGCTTGTTCCTAGTCCTGTTGCTATTTCTGCAATAAGGGAGTCTGCAA 2311
Query 1082 -------------------------------------------------------------------------- 1081
Sbjct 2312 ATTCAACCCCTGTTGGAATACTAGGGCCAACAGCTTGCACTGGAGAATCGGAAAAGCACCTTGAGTTACTGGCT 2385
Query 1082 -------------------------------------------------------------------------- 1081
Sbjct 2386 TCCCCTTTACCTATTCCATCAACCTTCCTTCCACACAGTAGTACTCCCGCTTTGCATCTTACAGTTCAGAGGCT 2459
Query 1082 -------------------------------------------------------------------------- 1081
Sbjct 2460 AAAGTTGCCACCACCACAGGGATCTTCTGAGAGCTGCACAGTTAACATCCCACAACAACCACCCGGAAGCCTGA 2533
Query 1082 -------------------------------------------------------------------------- 1081
Sbjct 2534 GCATCGCATCACCAAACACTGCCTTTATTCCTATCCATAACCCAGGTAGTTTCCCAGGCTCTCCTGTTGCTACC 2607
Query 1082 -------------------------------------------------------------------------- 1081
Sbjct 2608 ACGGACCCCATCACAAAATCTGCATCCCAAGTGGTAGGACTCAATCAAATGGTGCCTCAAATTGAGGGAAACAC 2681
Query 1082 -------------------------------------------------------------------------- 1081
Sbjct 2682 AGGGACAGTCCCTCAGCCTACCAATGTGAAGGTAGTTCTTCCAGCAGCTGGCCTCTCAGCTGCTCAGCCACCAG 2755
Query 1082 -------------------------------------------------------------------------- 1081
Sbjct 2756 CTTCCTACCCCTTACCAGGCTCTCCCCTTGCTGCCGGCGTGTTACCCAGCCAGAACTCCAGTGTGCTCAGCACA 2829
Query 1082 -------------------------------------------------------------------------- 1081
Sbjct 2830 GCAGCAACTTCTCCCCAGCCAGCGAGCGCAGGTATCAGCCAGGCCCAGGCAACTGTTCCTCCTGCAGTTCCTAC 2903
Query 1082 -------------------------------------------------------------------------- 1081
Sbjct 2904 CCACACCCCAGGCCCTGCCCCGAGCCCAAGCCCTGCCTTGACACACAGTACCGCGCAGAGTGACAGCACCTCTT 2977
Query 1082 -------------------------------------------------------------------------- 1081
Sbjct 2978 ACATCAGTGCTGTGGGGAACACGAACGCTAATGGGACAGTAGTGCCACCGCAGCAGATGGGCTCAGGTCCTTGT 3051
Query 1082 -------------------------------------------------------------------------- 1081
Sbjct 3052 GGTTCTTGTGGGCGAAGGTGCAGCTGTGGGACCAATGGAAACCTTCAGCTAAATAGTTACTATTATCCTAATCC 3125
Query 1082 -------------------------------------------------------------------------- 1081
Sbjct 3126 AATGCCTGGACCAATGTACCGAGTCCCTTCATTCTTTACTCTGCCATCCATTTGCAATGGCAGCTACCTCAACC 3199
Query 1082 -------------------------------------------------------------------------- 1081
Sbjct 3200 AAGCACATCAGAGCAATGGAAACCAACTTCCTTTTTTTCTGCCTCAGACTCCATATGCAAATGGACTGGTACAT 3273
Query 1082 -------------------------------------------------------------------------- 1081
Sbjct 3274 GACCCAGTCATGGGGAGCCAAGCCAACTATGGCATGCAGCAGATGGCAGGATTTGGGAGATTCTATCCTGTATA 3347
Query 1082 -------------------------------------------------------------------------- 1081
Sbjct 3348 TCCAGCACCTAACGTAGTTGCCAACACCAGTGGTTCGGGGCCCAAGAAGAATGGGAATGTCTCATGTTACAATT 3421
Query 1082 -------------------------------------------------------------------------- 1081
Sbjct 3422 GTGGTGTAAGCGGACACTATGCACAGGACTGTAAGCAGTCGTCCATGGAGGCCAATCAACAAGGCACTTACAGA 3495
Query 1082 -------------------------------------------------------------------------- 1081
Sbjct 3496 CTGAGATACGCACCTCCCCTCCCCCCTTCTAATGATACGTTGGATTCTGCAGACTGAAACGAGTAAAGCTTGCC 3569
Query 1082 -------------------------------------------------------------------------- 1081
Sbjct 3570 TACTTAATACACTCAAGTGTGGGGAGTCATGGGGTGTGGAGGGGAGGAAAGGAAAGTTCCAATTTGAGCCGCTG 3643
Query 1082 -------------------------------------------------------------------------- 1081
Sbjct 3644 TGAAAAAGGCCTCCACCAGCCTCTCACCAGAAGAGATTGCTCATTGGAACGCAATGCCACCTGGTGGGGGACGA 3717
Query 1082 -------------------------------------------------------------------------- 1081
Sbjct 3718 GGACAGTGCGAGCAAGCAGATGTTATTTCCTACTGACCTAATTTAGAGAACATTAAACAGTGGAAGTTTCCAGA 3791
Query 1082 -------------------------------------------------------------------------- 1081
Sbjct 3792 GAAAACAGCCATCAAAGAAGGTTGAGAGTGAGAATTAAGAGACACTGGAGAAGATCAAGAGAATGTGCCCTGAA 3865
Query 1082 --------------------------------------- 1081
Sbjct 3866 GACAACAACAAAAATCAATAAAAGATTTCAAGAATGAAA 3904
