Nucleotide Global Alignment

Description

Query:
ccsbBroad304_15119
Subject:
NR_158987.2
Aligned Length:
3727
Identities:
1371
Gaps:
2356

Alignment

Query    1  -------------------------------------------------------------------------A  1
                                                                                     |
Sbjct    1  GCTAATTCCCCGCTACCGGGTTGCGGCCGGAAGCCGGGCGCCGCGGCTCTGCTTCCCTCGGGGATCTGGCGACA  74

Query    2  TGGCCAGAAAGGCTCTCAAGCTTGCTTCGTGGACCAGCATGGCTCTTGCTGCCTCTGGCATCTACTTCTACAGT  75
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  TGGCCAGAAAGGCTCTCAAGCTTGCTTCGTGGACCAGCATGGCTCTTGCTGCCTCTGGCATCTACTTCTACAGT  148

Query   76  AACAAGTACTTGGACCCTAATGACTTTGGCGCTGTCAGGGTGGGCAGAGCAGTTGCTACGACGGCTGTCATCAG  149
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  AACAAGTACTTGGACCCTAATGACTTTGGCGCTGTCAGGGTGGGCAGAGCAGTTGCTACGACGGCTGTCATCAG  222

Query  150  TTACGACTACCTCACTTCCCTGAAGAGTGTCCCTTATGGCTCAGAGGAGTACTTGCAGCTGAGATCTAAGGTGC  223
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  TTACGACTACCTCACTTCCCTGAAGAGTGTCCCTTATGGCTCAGAGGAGTACTTGCAGCTGAGATCTAAGGTGC  296

Query  224  ACCTTCGCTCTGCCAGGCGTCTCTGTGAGCTCTGCTGTGCCAACCGGGGCACCTTCATCAAGGTGGGCCAGCAC  297
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  ACCTTCGCTCTGCCAGGCGTCTCTGTGAGCTCTGCTGTGCCAACCGGGGCACCTTCATCAAGGTGGGCCAGCAC  370

Query  298  CTGGGGGCTCTGGACTACCTGTTGCCAGAGGAGTACACCAGCACGCTGAAGGTACTGCACAGCCAGGCTCCACA  371
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  CTGGGGGCTCTGGACTACCTGTTGCCAGAGGAGTACACCAGCACGCTGAAGGTACTGCACAGCCAGGCTCCACA  444

Query  372  GAGCAGCATGCAAGAGATCCGCCAGGTCATCCGAGAAGATCTGGGCAAGGAGATCCATGATTTGTTCCAGAGCT  445
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GAGCAGCATGCAAGAGATCCGCCAGGTCATCCGAGAAGATCTGGGCAAGGAGATCCATGATTTGTTCCAGAGCT  518

Query  446  TCGATGACACCCCTCTGGGGACGGCCTCCCTGGCCCAGGTCCACAAGGCAGTGCTGCATGATGGGCGGACGGTG  519
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  TCGATGACACCCCTCTGGGGACGGCCTCCCTGGCCCAGGTCCACAAGGCAGTGCTGCATGATGGGCGGACGGTG  592

Query  520  GCCGTGAAGGTCCAGCACCCAAAGGTGCGGGCTCAGAGCTCGAAGGACATTCTCCTGATGGAGGTGCTCGTTCT  593
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  GCCGTGAAGGTCCAGCACCCAAAGGTGCGGGCTCAGAGCTCGAAGGACATTCTCCTGATGGAGGTGCTCGTTCT  666

Query  594  GGCTGTGAAGCAGCTGTTCCCAGAGTTTGAGTTTATGTGGCTTGTGGATGAAGCCAAGAAGAACCTGCCTTTGG  667
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  GGCTGTGAAGCAGCTGTTCCCAGAGTTTGAGTTTATGTGGCTTGTGGATGAAGCCAAGAAGAACCTGCCTTTGG  740

Query  668  AGCTGGATTTCCTCAATGAAGGGAGGAATGCTGAGAAGGTGTCCCAGATGCTCAGGCATTTTGACTTCTTGAAG  741
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  AGCTGGATTTCCTCAATGAAGGGAGGAATGCTGAGAAGGTGTCCCAGATGCTCAGGCATTTTGACTTCTTGAAG  814

Query  742  GTCCCCCGAATCCACTGGGACCTGTCCACGGAGCGGGTCCTCCTGATGGAGTTTGTGGATGGCGGGCAGGTCAA  815
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  GTCCCCCGAATCCACTGGGACCTGTCCACGGAGCGGGTCCTCCTGATGGAGTTTGTGGATGGCGGGCAGGTCAA  888

Query  816  TGACAGAGACTACATGGAGAGGAACAAGATCGACGTCAAT----------------------------------  855
            ||||||||||||||||||||||||||||||||||||||||                                  
Sbjct  889  TGACAGAGACTACATGGAGAGGAACAAGATCGACGTCAATGAGGTGAGGTCAAGAGCTCAGGGCTGCTGTGCCG  962

Query  856  --------------------------------------------------------------------------  855
                                                                                      
Sbjct  963  GGGAACGTGGGCTTGGTCAAGGCTGCCCAGGAAGTGCCTGTGTGTCCAGGTGAGGCCTCAGAGTCTGGCCCCCT  1036

Query  856  --------------------------------------------------------------------------  855
                                                                                      
Sbjct 1037  TGTCTTTAATAGGGCCCATTGTCTGGAGAATTATAAACTTTGAGCAAGAAAGATTCTTTCAGGTCATTTAGGCC  1110

Query  856  --------------------------------------------------------------------------  855
                                                                                      
Sbjct 1111  AGCCCTGTGCACACAGCGGCCTGCAGGGACATGCTGAACCCCTTCTGCCATTACCTGCTTTTCCTTTGTACCAT  1184

Query  856  --------------------------------------------------------------------------  855
                                                                                      
Sbjct 1185  CTGAGCCCCACAAAGCTAAGCGGCCACAGAGAACAATGATGCAAAATCAGTGGGACTTAATCCTTTTGGCTCTG  1258

Query  856  --------------------------------------------------------------------------  855
                                                                                      
Sbjct 1259  TGGGGCCTGTCTGTTGTCTCTTCCCTCTTCCTGCCCTTCTCTCTCCTTCCCACTTCCCAGATCTCAAGGGATCA  1332

Query  856  -------------------------------------------------------GAGATCTCACGCCACCTGG  874
                                                                   |||||||||||||||||||
Sbjct 1333  GGCAAAAAGGGGACAGCAGCAACCAACTGCATCAGCCTCCTAGAGCAGGAAAAAAGAGATCTCACGCCACCTGG  1406

Query  875  GCAAGATGTATAGTGAGATGATCTTCGTCAATGGCTTCGTGCACTGCGATCCCCACCCCGGCAATGTACTGGTG  948
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  GCAAGATGTATAGTGAGATGATCTTCGTCAATGGCTTCGTGCACTGCGATCCCCACCCCGGCAATGTACTGGTG  1480

Query  949  CGGAAGCACCCCGGCACGGGAAAGGCGGAGATTGTCCTGTTGGACCATGGGCTTTACCAGATGCTCACGGAAGA  1022
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                
Sbjct 1481  CGGAAGCACCCCGGCACGGGAAAGGCGGAGATTGTCCTGTTGGACCATGGGCTTTACC----------------  1538

Query 1023  ATTCCGCCTGAATTACTGCCACCTCTGGCAGTCTCTGATCTGGACTGACATGAAGAGAGTGAAGGAGTACAGCC  1096
                                                                                      
Sbjct 1539  --------------------------------------------------------------------------  1538

Query 1097  AGCGACTGGGAGCCGGGGATCTCTACCCCTTGTTTGCCTGCATGCTGACGGCGCGATCGTGGGACTCGGTCAAC  1170
                                                                                      
Sbjct 1539  --------------------------------------------------------------------------  1538

Query 1171  AGAGGCATCAGCCAAGCTCCCGTCACTGCCACTGAGGACTTAGAGATTCGCAACAACGCGGCCAACTACCTCCC  1244
                                              ||||||||||||||||||||||||||||||||||||||||
Sbjct 1539  ----------------------------------AGGACTTAGAGATTCGCAACAACGCGGCCAACTACCTCCC  1578

Query 1245  CCAGATCAGCCATCTCCTCAACCACGTGCCGCGCCAGATGCTGCTCATCTTGAAGACCAACGACCTGCTGCGTG  1318
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1579  CCAGATCAGCCATCTCCTCAACCACGTGCCGCGCCAGATGCTGCTCATCTTGAAGACCAACGACCTGCTGCGTG  1652

Query 1319  GCATTGAGGCCGCCCTGGGCACCCGCGCCAGCGCCAGCTCCTTTCTCAACATGTCACGTTGCTGCATCAGAGCG  1392
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1653  GCATTGAGGCCGCCCTGGGCACCCGCGCCAGCGCCAGCTCCTTTCTCAACATGTCACGTTGCTGCATCAGAGCG  1726

Query 1393  CTAGCTGAGCACAAGAAGAAGAATACCTGTTCATTCTTCAGAAGGACCCAGATCTCTTTCAGCGAGGCCTTCAA  1466
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1727  CTAGCTGAGCACAAGAAGAAGAATACCTGTTCATTCTTCAGAAGGACCCAGATCTCTTTCAGCGAGGCCTTCAA  1800

Query 1467  CTTATGGCAGATCAACCTCCATGAGCTCATCCTGCGTGTGAAGGGGTTGAAGCTGGCTGACCGGGTCTTGGCCC  1540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1801  CTTATGGCAGATCAACCTCCATGAGCTCATCCTGCGTGTGAAGGGGTTGAAGCTGGCTGACCGGGTCTTGGCCC  1874

Query 1541  TAATATGCTGGCTGTTCCCTGCTCCACTC---------------------------------------------  1569
            |||||||||||||||||||||||||||||                                             
Sbjct 1875  TAATATGCTGGCTGTTCCCTGCTCCACTCTGAGTGGAATTGCTCTCCCTGCCCCATTCTGGTGTCTTTCCACTC  1948

Query 1570  --------------------------------------------------------------------------  1569
                                                                                      
Sbjct 1949  CTCAGCCCCTCATCTTGCCTCCACCCAGCTGCTCCATTTTTGCCACATCGTGGCCCGCAGCCCCAGAGTCACTG  2022

Query 1570  --------------------------------------------------------------------------  1569
                                                                                      
Sbjct 2023  TCCATGTCACCATCCTTCTCCTCCTTTGGAATCCTCTCCGCACACTGTGGCCCTTGTCTCAGGGCCCACAAGCT  2096

Query 1570  --------------------------------------------------------------------------  1569
                                                                                      
Sbjct 2097  GAACTGTGGCATAGCTCTCTCTTCTTCTCCAAGAAGACTCAGCAGCCTACATTCCCATTCCTGGTATGTGCCAT  2170

Query 1570  --------------------------------------------------------------------------  1569
                                                                                      
Sbjct 2171  TGGGTTGGATGTCCCCACTACTTCCGTTAACCCTTCCCATTGTCAAGATGTGCCACGGGTGCCACTGGGGGCAC  2244

Query 1570  --------------------------------------------------------------------------  1569
                                                                                      
Sbjct 2245  ACTGAACTTGTAGGGAGTGTGATTTTGTTGGAGGTGCACATGGTCTCTGAATTTGACAGAGAACACCTTCCCTT  2318

Query 1570  --------------------------------------------------------------------------  1569
                                                                                      
Sbjct 2319  TCCTTGCCATGTCACCCTCCAGAGGAAGTCACACCTCAGCGAGGTGGTTTGGCATCTGGGGCCAACTCCATTAC  2392

Query 1570  --------------------------------------------------------------------------  1569
                                                                                      
Sbjct 2393  AGCTATGAGCTCACTGCTGTCAGTGACGTTTGGTGTTTTCTGTACTGTGTTTCAATAAAAACTCCTTCAAGGTT  2466

Query 1570  --------------------------------------------------------------------------  1569
                                                                                      
Sbjct 2467  GCAGGATTTGTCCATCATAACTCACTGGCCTCCCACCTGACCCCAGGCACGTGCCCTTCCAGAATGTGCTCATG  2540

Query 1570  --------------------------------------------------------------------------  1569
                                                                                      
Sbjct 2541  GTCCTCGCCAAGGGCTTATGGTTCCTCTTGGTTGCTGCTTCCTCAGGGTTTCCCAGGGAGATCTAGGGAACAGA  2614

Query 1570  --------------------------------------------------------------------------  1569
                                                                                      
Sbjct 2615  AGGCCAGGGGCTGTTTGGTGGGATTTTCCTTATAGGTTGGGAGTTCACCTACAATGCCCATTAGGTCAGAGTGG  2688

Query 1570  --------------------------------------------------------------------------  1569
                                                                                      
Sbjct 2689  ACCTGAATCGAGTATTGGTGTGATCTTCTGCTTGGCTTCTTGCTCCTGTAATCCTTCCAACCTGTGGGGCCACT  2762

Query 1570  --------------------------------------------------------------------------  1569
                                                                                      
Sbjct 2763  TCCACTATGGGGCCACTTCCTGCTTCTTGGGGGTTTCTCTTACCTTCCAAGACTCAGACTCTGGTTGGAGGAGT  2836

Query 1570  --------------------------------------------------------------------------  1569
                                                                                      
Sbjct 2837  TAAGAAGCCCAAGGCCAGGAACTCAGAGGCTCAGCTGAAACCTTGGACCTTGTTTTTCTGTGACCTGGGTACCA  2910

Query 1570  --------------------------------------------------------------------------  1569
                                                                                      
Sbjct 2911  ACCTTGTTCTACTGTTTCCTGACTTATCCCTTTGGTTCTCATTCAGTGGCCCCAGTTTTAGGCCTGGAATTCTA  2984

Query 1570  --------------------------------------------------------------------------  1569
                                                                                      
Sbjct 2985  CTTGTCTCCCCCCAGTCCTTCTGGAGACCTTAGTCCTCTTGCTGAAACCTCCGTCACTGTGGCTGGGTTTTCAC  3058

Query 1570  --------------------------------------------------------------------------  1569
                                                                                      
Sbjct 3059  TGGGAAACTTCTGTGTTTCTACCCCATTGCTTGCTGCCAGCACTGCCTCTCCCCCCAGCCTGGTTGTCTGCTTC  3132

Query 1570  --------------------------------------------------------------------------  1569
                                                                                      
Sbjct 3133  TGTTTCTTGGACATCCCTAAGCTCCTGCTCTAATTCCCATGTCTTTGTCTTTGGCAGGTCCTACTGTCTGCTTT  3206

Query 1570  --------------------------------------------------------------------------  1569
                                                                                      
Sbjct 3207  CACGGACAGTAATTGTATTTGAGCCTCTCTGATCTTACTTCACCCAATTCACAAGGGCAGAAAAAATCCTGAAT  3280

Query 1570  --------------------------------------------------------------------------  1569
                                                                                      
Sbjct 3281  TTGAGCCTAATTTTCTGTACTCTTTATTCATAGTACAGCAAGCAGATTTTTCAGTGATCAGTGACAATTCACAA  3354

Query 1570  --------------------------------------------------------------------------  1569
                                                                                      
Sbjct 3355  TCCTTTTATTTCCCAAAAGAATTAATTGTTCTTAGTGACCAGTTGGATGCACCCAGGGACCTGAGAGTATAATT  3428

Query 1570  --------------------------------------------------------------------------  1569
                                                                                      
Sbjct 3429  TGCAATATCTGATTATTAATCTTGAGGATGTGTGCTGCATAGTATATTTTATGGTGTCTTTTATAGCCACTGAA  3502

Query 1570  ---------------------------  1569
                                       
Sbjct 3503  GTAAATATAAATGTCCTTTCTGTTCAA  3529

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