Nucleotide Global Alignment

Description

Query:
ccsbBroad304_15197
Subject:
NM_001003920.3
Aligned Length:
2334
Identities:
1283
Gaps:
915

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGTCGTCCGGGTCCAAGGAAGGTGGCGGGGGCTCCCCCGCCTACCACCTCCCACACCCACACCCACACCCACC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CCAGCACGCCCAATATGTGGGCCCCTATCGCCTGGAGAAGACGCTGGGCAAAGGACAGACAGGTCTAGTTAAAC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TTGGAGTCCACTGCATCACGGGTCAGAAGGTCGCTGTCAAGATCGTGAACAGGGAGAAGCTGTCGGAATCGGTG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CTGATGAAGGTGGAGAGGGAAATCGCCATCCTGAAGCTCATTGAACACCCGCACGTGCTCAAGCTCCACGACGT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CTACGAGAACAAGAAATATTTATACTTGGTTCTTGAGCACGTTTCTGGTGGTGAGCTGTTCGACTACCTGGTAA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  AAAAAGGGAGACTGACACCCAAGGAGGCCCGGAAGTTCTTCCGCCAGATCGTGTCAGCACTGGACTTCTGCCAT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  AGCTACTCCATCTGTCACAGAGACTTGAAGCCAGAGAACCTGCTGTTGGATGAGAAAAACAACATCCGCATCGC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  AGACTTTGGTATGGCGTCCCTGCAAGTGGGGGACAGCCTCCTGGAGACCAGCTGCGGGTCCCCCCATTACGCAT  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GTCCAGAGGTGATCAAGGGGGAAAAGTATGATGGCCGCCGGGCAGACATGTGGAGCTGTGGAGTCATCCTATTT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GCCCTGCTTGTGGGGGCACTGCCCTTCGATGACGACAACCTGCGCCAGCTACTGGAGAAGGTGAAACGTGGGGT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CTTCCACATGCCTCACTTCATCCCTCCAGACTGCCAGAGCCTCCTGAGAGGGATGATTGAAGTGGAGCCCGAGA  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  AAAGGCTCAGTCTGGAGCAAATTCAGAAACATCCTTGGTATCTGGGCGGGAAACACGAACCAGACCCTTGCCTG  888

Query    1  ---------------------------ATGCGGAGCCTGCCATCCAACGGAGAGCTGGACCCCGACGTCCTAGA  47
                                       |||||.||||||||.|||||.||.|||||||||||.|||||.||.||
Sbjct  889  GAGCCAGCCCCAGGCCGCAGAGTAGCCATGCGTAGCCTGCCTTCCAATGGCGAGCTGGACCCTGACGTTCTGGA  962

Query   48  GAGCATGGCATCACTGGGCTGCTTCAGGGACCGCGAGAGGCTGCATCGCGAGCTGCGCAGTGAGGAGGAGAACC  121
            .||||||||.||.||||||||||||||.|||||||||.|||||||..|.||.|||||.||.||||||||.||||
Sbjct  963  AAGCATGGCGTCTCTGGGCTGCTTCAGAGACCGCGAGCGGCTGCACAGAGAACTGCGAAGCGAGGAGGAAAACC  1036

Query  122  AAGAAAAGATGATATATTATCTGCTTTTGGATCGGAAGGAGCGGTATCCCAGCTGTGAGGACCAGGACCTGCCT  195
            |||||||||||||.||||||.||||||||||||||||.|||||||||||.||||||||.|||||||||||||||
Sbjct 1037  AAGAAAAGATGATCTATTATTTGCTTTTGGATCGGAAAGAGCGGTATCCTAGCTGTGAAGACCAGGACCTGCCT  1110

Query  196  CCCCGGAATGATGTTGACCCCCCCCGGAAGCGTGTGGATTCTCCCATGCTGAGTCGTCACGGGAAGCGGCGACC  269
            ||.|||||||||||||||||.||.||.||||||||||||||.|||||||||||..|.||||||||.|||.|.||
Sbjct 1111  CCTCGGAATGATGTTGACCCACCTCGTAAGCGTGTGGATTCCCCCATGCTGAGCAGACACGGGAAACGGAGGCC  1184

Query  270  AGAGCGGAAGTCCATGGAAGTCCTGAGCATCACCGATGCCGGGGGTGGTGGCTCCCCTGTACCCACACGACGGG  343
            ||||||||||||||||||||||||.||.|||||.|||||.|||.|||||||||||||.||.||.||..||||||
Sbjct 1185  AGAGCGGAAGTCCATGGAAGTCCTCAGTATCACAGATGCTGGGAGTGGTGGCTCCCCAGTGCCTACCAGACGGG  1258

Query  344  CCTTGGAGATGGCCCAGCACAGCCAGAGATCCCGTAGCGTCAGTGGAGCCTCCACGGGTCTGTCCTCCAGCCCT  417
            ||||||||||||||||||||||.|||||||||||.||||||||||||||||||||.||||||||||||||||||
Sbjct 1259  CCTTGGAGATGGCCCAGCACAGTCAGAGATCCCGCAGCGTCAGTGGAGCCTCCACTGGTCTGTCCTCCAGCCCT  1332

Query  418  CTAAGCAGCCCAAGGAGTCCGGTCTTTTCCTTTTCACCGGAGCCGGGGGCTGGAGATGAGGCTCGAGGCGGGGG  491
            ||.|||||||||||||||||||||||||||||.|||||||||||.||.|||||||||||||||.|||||||.||
Sbjct 1333  CTGAGCAGCCCAAGGAGTCCGGTCTTTTCCTTCTCACCGGAGCCAGGCGCTGGAGATGAGGCTAGAGGCGGAGG  1406

Query  492  CTCCCCGACTTCCAAAACGCAGACGCTGCCTTCTCGGGGCCCCAGGGGTGGGGGCGCCGGGGAGCAGCCCCCGC  565
            ||||||.|||||||||||.||||||||||||||||||||||||||.|||||||||||.||.||||||||.||.|
Sbjct 1407  CTCCCCAACTTCCAAAACACAGACGCTGCCTTCTCGGGGCCCCAGAGGTGGGGGCGCTGGAGAGCAGCCACCAC  1480

Query  566  CCCCCAGTGCCCGCTCCACACCCCTGCCCGGCCCCCCAGGCTCCCCGCGCTCCTCTGGCGGGACCCCCTTGCAC  639
            |||||||||||||.|||||.|||.||||.||.||.||||||||||||||||||||.|||||.||||||||||||
Sbjct 1481  CCCCCAGTGCCCGTTCCACGCCCTTGCCTGGACCACCAGGCTCCCCGCGCTCCTCCGGCGGAACCCCCTTGCAC  1554

Query  640  TCGCCTCTGCACACGCCCCGGGCCAGTCCCACCGGGACCCCGGGGACAACACCACCCCCCAGCCCCGGCGGTGG  713
            ||.||||||||||||||.||.|||||.||.||.||||||||.||.||.||.|||||.||||||||.||||||||
Sbjct 1555  TCACCTCTGCACACGCCTCGAGCCAGCCCTACGGGGACCCCAGGAACGACGCCACCTCCCAGCCCAGGCGGTGG  1628

Query  714  CGTCGGGGGAGCCGCCTGGAGGAGTCGTCTCAACTCCATCCGCAACAGCTTCCTGGGCTCCCCTCGCTTTCACC  787
            |||||||||||||||||||||.|||||.|||||||||||||||||||||||||||||||||||||||||.||||
Sbjct 1629  CGTCGGGGGAGCCGCCTGGAGAAGTCGGCTCAACTCCATCCGCAACAGCTTCCTGGGCTCCCCTCGCTTCCACC  1702

Query  788  GGCGCAAGATGCAGGTCCCTACCGCTGAGGAGATGTCCAGCTTGACGCCAGAGTCCTCCCCGGAGCTGGCAAAA  861
            |||||||||||||||||||||||||.||||||||||||||.|||||.|||||.|||||.||.||||||||||||
Sbjct 1703  GGCGCAAGATGCAGGTCCCTACCGCCGAGGAGATGTCCAGTTTGACACCAGAATCCTCTCCTGAGCTGGCAAAA  1776

Query  862  CGCTCCTGGTTCGGGAACTTCATCTCCTTGGACAAAGAAGAACAAATATTCCTCGTGCTAAAGGACAAACCTCT  935
            |||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  CGCTCCTGGTTCGGGAATTTCATCTCCTTGGACAAAGAAGAACAAATATTCCTCGTGCTAAAGGACAAACCTCT  1850

Query  936  CAGCAGCATCAAAGCAGACATCGTCCATGCCTTTCTGTCGATCCCCAGCCTGAGTCACAGTGTGCTGTCACAGA  1009
            |||||||||||||||.|||||.|||||||||||||||||||||||||||||||||||||||||.||||||||||
Sbjct 1851  CAGCAGCATCAAAGCGGACATTGTCCATGCCTTTCTGTCGATCCCCAGCCTGAGTCACAGTGTACTGTCACAGA  1924

Query 1010  CCAGCTTCAGGGCCGAGTACAAAGCCAGTGGCGGCCCCTCCGTCTTCCAAAAGCCCGTCCGCTTCCAGGTGGAC  1083
            ||||||||||||||||.|||||.|||||.||||||||||||||||||||.|||||.||||||||.|||||||||
Sbjct 1925  CCAGCTTCAGGGCCGAATACAAGGCCAGCGGCGGCCCCTCCGTCTTCCAGAAGCCTGTCCGCTTTCAGGTGGAC  1998

Query 1084  ATCAGCTCCTCTGAGGGTCCAGAGCCCTCCCCGCGACGGGACGGCAGCGGAGGTGGTGGCATCTACTCCGTCAC  1157
            |||||||||||||||||||||||.|||||.||.|||.|.||.||||||.|.||.||||||||||||||.|||||
Sbjct 1999  ATCAGCTCCTCTGAGGGTCCAGAACCCTCACCCCGAAGAGATGGCAGCAGTGGAGGTGGCATCTACTCAGTCAC  2072

Query 1158  CTTCACTCTCATCTCGGGTCCCAGCCGTCGGTTCAAGCGAGTGGTGGAGACCATCCAGGCACAGCTCCTGAGCA  1231
            |||.|||||||||||.||||||||||||||||||||.||.|||||.||||||||||||||||||.|.|||||.|
Sbjct 2073  CTTTACTCTCATCTCCGGTCCCAGCCGTCGGTTCAAACGTGTGGTAGAGACCATCCAGGCACAGTTGCTGAGTA  2146

Query 1232  CTCATGACCAGCCCTCCGTGCAGGCCCTGGCAGACGAGAAGAACGGGGCCCAGACCCGGCCTGCTGGTGCCCCA  1305
            ||||.|||||||||||||||||||||.|||||||.|||||||||||.||||||||||||||||||||..|||||
Sbjct 2147  CTCACGACCAGCCCTCCGTGCAGGCCTTGGCAGATGAGAAGAACGGAGCCCAGACCCGGCCTGCTGGGACCCCA  2220

Query 1306  CCCCGAAGCCTGCAGCCCCCACCCGGCCGCCCAGACCCAGAGCTGAGCAGCTCTCCCCGCCGAGCCCCCCCCAA  1379
            |||||||||||||||||||||||.||||||.|.|||||.||.|||||.||||||||||||||||..|||||.||
Sbjct 2221  CCCCGAAGCCTGCAGCCCCCACCAGGCCGCTCTGACCCTGATCTGAGTAGCTCTCCCCGCCGAGGACCCCCTAA  2294

Query 1380  GGACAAGAAGCTCCTGGCCACCAACGGGACCCCTCTGCCC  1419
            ||||||||||||||||||||||||.||.||||||||.|||
Sbjct 2295  GGACAAGAAGCTCCTGGCCACCAATGGAACCCCTCTACCC  2334

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