Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_15207
- Subject:
- NM_001271848.1
- Aligned Length:
- 2239
- Identities:
- 985
- Gaps:
- 1154
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGCCCTGCTGTAGTCACAGGAGCTGTAGAGAGGACCCCGGTACATCTGAAAGCCGGGAAATGATGTTTCAGGA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CCCAGTGGCCTTTGAGGATGTGGCTGTGAACTTCACCCAGGAAGAGTGGACATTGCTGGATATTTCCCAGAAGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 ATCTCTTCAGGGAAGTGATGCTGGAAACTTTCAGGAACCTGACCTCTATAGGAAAAAAATGGAGTGACCAGAAC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 ATTGAATATGAGTACCAAAACCCCAGAAGAAGCTTCAGGAGTCTCATAGAAGAGAAAGTCAATGAAATTAAAGA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AGACAGTCATTGTGGAGAAACTTTTACCCAGGTTCCAGATGACAGACTGAACTTCCAGGAGAAGAAAGCTTCTC 370
Query 1 -----------------------------------------------------------------ATGAACATC 9
||||.||||
Sbjct 371 CTGAAGTAAAATCATGTGACAGCTTTGTGTGTGCAGAAGTTGGCATAGGTAACTCATCTTTTAATATGAGCATC 444
Query 10 AGAGGTGACACTGGACACAAGGCATGTGAATGTCAGGAATATGGACCAAAGCCATGGAAGAGTCAACAACCTAA 83
|||||||||||||||||||||||||.|||.|.|||||||||||||||||||||||..|||.|||||||||||||
Sbjct 445 AGAGGTGACACTGGACACAAGGCATATGAGTATCAGGAATATGGACCAAAGCCATATAAGTGTCAACAACCTAA 518
Query 84 A------AAAGCCTTCAGATATCACCCCTCCTTGAGAACACAAGAAAGGGATCACACTGGAAAGAAACCCTATG 151
| |||||||||||.||||.|||.|||.|.|||||||||||||||||||||||||||.||||||||||||
Sbjct 519 AAATAAGAAAGCCTTCAGGTATCGCCCATCCATTAGAACACAAGAAAGGGATCACACTGGAGAGAAACCCTATG 592
Query 152 CTTGTAAAGAATGTGGAAAAAACATTATTTACCATTCAAGCATTCAAAGACACATGGTAGTGCACAGTGGGGAT 225
|||||||||..||||||||||.|.||||||.||||||||||||||.|||||||||||||.||||||||||||||
Sbjct 593 CTTGTAAAGTCTGTGGAAAAACCTTTATTTTCCATTCAAGCATTCGAAGACACATGGTAATGCACAGTGGGGAT 666
Query 226 GGACCTTATAAATGTAAGTTTTGTGGGAAAGCATTCCATTGTCTCAGTTTATATCTTATCCATGAAAGAACTCA 299
|||.|||||||||||||.||||||||||||||.|||||||.|.|||||||||||||||||||||||||||||||
Sbjct 667 GGAACTTATAAATGTAAATTTTGTGGGAAAGCCTTCCATTCTTTCAGTTTATATCTTATCCATGAAAGAACTCA 740
Query 300 CACTGGAGAGAAACCGTATGAATGTAAACAATGTGGTAAATCTTTTAGTTATTCTGCTACCCATCGAATACATG 373
|||||||||||||||.||||||||||||||||||||||||||.||||.||||||||||||||.||.||||||||
Sbjct 741 CACTGGAGAGAAACCATATGAATGTAAACAATGTGGTAAATCCTTTACTTATTCTGCTACCCTTCAAATACATG 814
Query 374 AAAGAACTCACATTGGAGAAAAGCCTTATGAATGT--CAGGAATGTGGGAAAGCATTCCATAGTCCCAGATCCT 445
||||||||||||.|||.||.|||||.||||||||| || ||||||..||||||||.||||||.|.||.||||
Sbjct 815 AAAGAACTCACACTGGGGAGAAGCCCTATGAATGTAGCA--AATGTGATAAAGCATTTCATAGTTCTAGTTCCT 886
Query 446 GTCACAGACATGAAAGGAGTCACATGGGAGAGAAGGCTTATCAATGTAAGGAATGTGGAAAAGCATTCATG--T 517
.|||.|||||||||||.||||||||||||||||||.||||||||||.||.||||||||||||||||| || |
Sbjct 887 ATCATAGACATGAAAGAAGTCACATGGGAGAGAAGCCTTATCAATGCAAAGAATGTGGAAAAGCATT--TGCAT 958
Query 518 GTCCCCGTTATGTTCGTAGACATGAAAGGACCCACTCTAGGAAAAAACTTTATGAATGTAAGCAGTGTGGGAAA 591
.|.||.|||.|.||||||||||||||||||||||||||.|||||||||..||||||||||||||.|.||||.||
Sbjct 959 ATACCAGTTCTCTTCGTAGACATGAAAGGACCCACTCTGGGAAAAAACCGTATGAATGTAAGCAATATGGGGAA 1032
Query 592 GCATTATCCTCTCTTACAAGTTTTCAAACACACATAAGAATGCACTCTGGAGAAAGACCTTATGAATGTAAGAC 665
|..|||||||.|||||.|||||||||||||||||||||||||.||||||||||||||||||||.|||||||||.
Sbjct 1033 GGCTTATCCTATCTTATAAGTTTTCAAACACACATAAGAATGAACTCTGGAGAAAGACCTTATAAATGTAAGAT 1106
Query 666 ATGTGGGAAAGGCTTTTATTCTGCCAAGTCATTTCAAAGACATGAAAAAACTCACAGTGGAGAGAAACCGTATA 739
||||||||||||||||||||||||||||||||||||||.|||||||||||||||||.|||||||||||..||||
Sbjct 1107 ATGTGGGAAAGGCTTTTATTCTGCCAAGTCATTTCAAACACATGAAAAAACTCACACTGGAGAGAAACGCTATA 1180
Query 740 AATGCAAGCAATGTGGTAAAGCCTTCACTCGTTCCGGTTCCTTTCGATATCATGAAAGGACTCACACTGGAGAG 813
|||||||||||||||||||||||||||.||.||||.||||||||||||||||||||||||.|||||||||||||
Sbjct 1181 AATGCAAGCAATGTGGTAAAGCCTTCAATCTTTCCAGTTCCTTTCGATATCATGAAAGGATTCACACTGGAGAG 1254
Query 814 AAACCCTATGAGTGTAAGCAATGTGGGAAAGCCTTCAGATCTGCCCCAAATCTTCAATCGCATGGTAGGACTCA 887
||||||||||||||||||||.||||||||||||||||||||||||.||.|.||||.|..|||.|||.|||||||
Sbjct 1255 AAACCCTATGAGTGTAAGCAGTGTGGGAAAGCCTTCAGATCTGCCTCACAGCTTCGAGTGCACGGTGGGACTCA 1328
Query 888 CACTGGAGAGAAACCGTATCAATGTAAGGAATGTGGGAAAGCTTTCAGATCTGCCTCACAACTTCGAATCCATC 961
|||||||||||||||.|||.||||||||||||||||||||||.|||||||||.|||||||.||||||.|.|||.
Sbjct 1329 CACTGGAGAGAAACCCTATGAATGTAAGGAATGTGGGAAAGCCTTCAGATCTACCTCACACCTTCGAGTGCATG 1402
Query 962 GTAGGATTCACACTGGAGAGAAACCCTATGAATGTAAGAAATGTGGGAAAGCCTTCAGATATGTCCAGAACTTT 1035
||||||.|||.|||||||||||||||||||||||||||.|||||||||||||||||||||||||..||.||.||
Sbjct 1403 GTAGGACTCATACTGGAGAGAAACCCTATGAATGTAAGGAATGTGGGAAAGCCTTCAGATATGTGAAGCACCTT 1476
Query 1036 CGATTTCATGAAAGGAC--AAACACACATAAGAATGCACTCTGGAGAAAGACCTTA------------------ 1089
|.|.||||||||||||| |||.||||||||||||||.||||||||||||||||||
Sbjct 1477 CAAATTCATGAAAGGACAGAAAAACACATAAGAATGCCCTCTGGAGAAAGACCTTATAAATGTAGTATATGTGA 1550
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 1551 GAAAGGCTTTTATTCTGCCAAGTCATTTCAAACACATGAAAAAACTCACACTGGAGAGAAACCCTATGAATGCA 1624
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 1625 ACCAATGTGGTAAAGCCTTCAGATGTTGCAATTCCCTTCGATATCATGAAAGGACTCACACTGGAGAGAAACCC 1698
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 1699 TATGAGTGTAAGCAATGTGGGAAAGCCTTCAGATCTGCCTCACACCTTCGAATGCATGAAAGGACTCACACTGG 1772
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 1773 AGAGAAACCCTATGAGTGTAAGCAATGTGGGAAAGCCTTCAGTTGTGCCTCAAACCTTCGAAAGCATGGTAGGA 1846
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 1847 CTCACACTGGAGAGAAACCCTATGAGTGTAAGCAATGTGGGAAAGCCTTCAGATCTGCCTCAAACCTTCAGATG 1920
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 1921 CATGAAAGGACTCACACTGGAGAGAAACCCTATGAATGTAAGGAATGCGAAAAAGCATTCTGTAAATTCTCTTC 1994
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 1995 TTTTCAAATACATGAAAGGAAGCACAGAGGAGAGAAGCCCTATGAATGTAAGCATTGTGGGAATGGATTCACAT 2068
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 2069 CTGCCAAGATTCTTCAAATACATGCAAGAACACACATTGGAGAGAAACACTATGAATGTAAGGAATGCGGAAAA 2142
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 2143 GCATTCAATTATTTTTCTTCCTTGCATATACACGCAAGGACTCATATGGGAGAGAAGCCATATGAATGTAAGGA 2216
Query 1090 ------------------- 1089
Sbjct 2217 TTGTGGGAAAGCATTCAGC 2235
