Nucleotide Global Alignment

Description

• Query: ccsbBroad304_15207
• Subject: NM_001367172.2
• Aligned Length: 1462
• Identities: 710
• Gaps: 653

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGGACCCTGTGGCCTGTGAGGATGTTGCTGTGAACTTCACCCAGGAGGAGTGGGCTTTGCTGGATATTTCGCA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GAGGAAACTCTACAGGGAAGTGATGCTGGAAACTTTCAGGAACCTGACCTCTATAGGGAAAAAGTGGAAAGACC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AGAACATTGAATATGAGTACCAAAACCCCAGGAGAAACTTCAGGAGTCTCATAGAAGGGAATGTCAATGAAATT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  AAAGAAGACAGTCATTGTGGAGAAACTTTTACCCAGGTTCCAGATGACAGGCTGAACTTCCAGGAGAAGAAAGC  296

Query    1  ----------------------------------------------------------------------ATGA  4
                                                                                  ||||
Sbjct  297  TTCTCCTGAAGCAAAATCATGTGATAACTTTGTATGTGGAGAAGTTGGCATAGGTAACTCATCTTTTAATATGA  370

Query    5  ACATCAGAGGTGACACTGGACACAAGGCATGTGAATGTCAGGAATATGGACCAAAGCCATGGAAGAGTCAACAA  78
            |||||||||||||||.|||.||||||||||..||.|.||||||.||||.|||||||||||..|||.||||||||
Sbjct  371  ACATCAGAGGTGACATTGGGCACAAGGCATACGAGTATCAGGACTATGCACCAAAGCCATATAAGTGTCAACAA  444

Query   79  CCTAAAAAAGCCTTCAGATATCACCCCTCCTTGAGAACACAAGAAAGGGATCACACTGGAAAGAAACCCTATGC  152
            |||||.||||||||||||||||||||||||||.|||||||||||||||.|||||||.|||.|||||||||||||
Sbjct  445  CCTAAGAAAGCCTTCAGATATCACCCCTCCTTTAGAACACAAGAAAGGAATCACACCGGAGAGAAACCCTATGC  518

Query  153  TTGTAAAGAATGTGGAAAAAACATTATTTACCATTCAAGCATTCAAAGACACATGGTAGTGCACAGTGGGGATG  226
            ||||||||||||||||||||.|.||||||.|||||||.||||||.|||||.|||||||.|||||||||||||||
Sbjct  519  TTGTAAAGAATGTGGAAAAACCTTTATTTCCCATTCAGGCATTCGAAGACGCATGGTAATGCACAGTGGGGATG  592

Query  227  GACCTTATAAATGTAAGTTTTGTGGGAAAGCATTCCATTGTCTCAGTTTATATCTTATCCATGAAAGAACTCAC  300
            |||||||||||||||||||||||||||||||..|||||||||||||.|||||||||||||||||||||||||||
Sbjct  593  GACCTTATAAATGTAAGTTTTGTGGGAAAGCTGTCCATTGTCTCAGATTATATCTTATCCATGAAAGAACTCAC  666

Query  301  ACTGGAGAGAAACCGTATGAATGTAAACAATGTGGTAAATCTTTTAGTTATTCTGCTACCCATCGAATACATGA  374
            ||||||||||||||||||||||||||||||||||.||||||.||||||||||||||||||||||||||||||||
Sbjct  667  ACTGGAGAGAAACCGTATGAATGTAAACAATGTGTTAAATCCTTTAGTTATTCTGCTACCCATCGAATACATGA  740

Query  375  AAGAACTCACATTGGAGAAAAGCCTTATGAATGTCAGGAATGTGGGAAAGCATTCCATAGTCCCAGATCCTGTC  448
            |||||||||||.|||||||||||||||||||||||||.|||||||||||||||||||||||.||||.||.|.||
Sbjct  741  AAGAACTCACACTGGAGAAAAGCCTTATGAATGTCAGCAATGTGGGAAAGCATTCCATAGTTCCAGTTCTTTTC  814

Query  449  ACAGACATGAAAGGAGTCACATGGGAGAGAAGGCTTATCAATGTAAGGAATGTGGAAAAGCATTCATGTGTCCC  522
                                                                     ||||             
Sbjct  815  ---------------------------------------------------------AAGC-------------  818

Query  523  CGTTATGTTCGTAGACATGAAAGGACCCACTCTAGGAAAAAACTTTATGAATGTAAGCAGTGTGGGAAAGCATT  596
                          ||||.||||.||||||.||.||..|||.|..|||||||||||.||.|||||.||      
Sbjct  819  --------------ACATAAAAGAACCCACACTGGGGGAAAGCCATATGAATGTAAACAATGTGGCAA------  872

Query  597  ATCCTCTCTTACAAGTTTTCAAACACACATAAGAATGCACTCTGGAGAAAGACCTTATGAATGTAAGACATGTG  670
            ||||| ||     |||                          |||                |||    |||   
Sbjct  873  ATCCT-TC-----AGT--------------------------TGG----------------TGT----CAT---  891

Query  671  GGAAAGGCTTTTATTCTGCCAAGTCATTTCAAAGACATGAAAAAACTCACAGTGGAGAGAAACCGTATAAATGC  744
                                   ||.|||||||.||||||||.||||||||.|||.|||||.||.|.|.|||| 
Sbjct  892  -----------------------TCCTTTCAAATACATGAAAGAACTCACACTGGGGAGAAGCCCTGTGAATG-  941

Query  745  AAGC-AATGTGGTAAAGCCTTCACTCGTTCCGGTTCCT---TTCGATATCATGAAAGGACTCACACTGGAGAGA  814
            .||| |||||..||||||.|||..|.|||.|.|.||||   ||.||   |||.||||||.||||||.|||||||
Sbjct  942  TAGCAAATGTAATAAAGCATTCCGTAGTTACAGATCCTATCTTAGA---CATAAAAGGAGTCACACGGGAGAGA  1012

Query  815  AACCCTATGAGTGTAAGCAATGTGGGAAAGCCTTCAGATCTGCCCCAAATCTTCAATCGCATGGTAGGACTCAC  888
            |.||.|||.|.||||||.|||||.|.|||||.||||                                      
Sbjct 1013  AGCCTTATCAATGTAAGGAATGTAGAAAAGCATTCA--------------------------------------  1048

Query  889  ACTGGAGAGAAACCGTATCAATGTAAGGAATGTGGGAAAGCTTTCAGATCTGCCTCACAACTTCGAATCCATCG  962
                         ||||||                        .|||.||         .|||||.|..|||..
Sbjct 1049  -------------CGTATC------------------------CCAGTTC---------CCTTCGTAGACATGA  1076

Query  963  TAGGATTCACACTG-GAGAGAAACCCTATGAATGTAAGAAATGTGGGAAAGCCT--TCAGATATGTCCAGAACT  1033
            .||||..|||.||| || |.|||||.||||||||||||.|.|||||||||||.|  ||..|||.||       |
Sbjct 1077  AAGGACCCACTCTGCGA-AAAAACCTTATGAATGTAAGCAGTGTGGGAAAGCATTATCTTATAAGT-------T  1142

Query 1034  TTCGATTTCATGAAAGGACAAACACACATAAGAATGCACTCTGGAGAAAGACCTTA  1089
            ||                |||||||||.|||||||||.||||||||||||||||||
Sbjct 1143  TT----------------CAAACACACCTAAGAATGCGCTCTGGAGAAAGACCTTA  1182