Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_15236
- Subject:
- NM_001348725.1
- Aligned Length:
- 1788
- Identities:
- 994
- Gaps:
- 702
Alignment
Query 1 ATGGACCCAGTGGCTTTTAAGGATGTGGCTGTGAACTTCACCCAGGAGGAGTGGGCTTTGCTGGATATTTCCCA 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 GAGGAAACTCTACAGGGAAGTGATGCTGGAAACTTTCAGGAACCTGACCTCTTTAGGAAAAAGGTGGAAAGACC 148
Sbjct 1 -------------------------------------------------------------------------- 0
Query 149 AGAACATTGAATATGAGCACCAAAACCCCAGGAGAAACTTCAGGAGTCTCATAGAAGAAAAAGTCAATGAAATT 222
Sbjct 1 -------------------------------------------------------------------------- 0
Query 223 AAAGATGACAGTCATTGTGGAGAAACTTTTACCCCAGTTCCAGATGACAGACTGAACTTCCAGGAGAAGAAAGC 296
Sbjct 1 -------------------------------------------------------------------------- 0
Query 297 TTCTCCTGAAGTAAAATCATGTGAAAGCTTTGTGTGTGGAGAAGTTGGCCTAGGTAACTCATCTTTTAATATGA 370
||||
Sbjct 1 ----------------------------------------------------------------------ATGA 4
Query 371 ACATCAGAGGTGACATTGGACACAAGGCATATGAGTATCAGGAATATGGACCAAAGCCATGTAAGTGTCAACAA 444
|||||||||||||||.||||||||||||||.|||.|.||||||||||||||||||||||||.|||.||||||||
Sbjct 5 ACATCAGAGGTGACACTGGACACAAGGCATGTGAATGTCAGGAATATGGACCAAAGCCATGGAAGAGTCAACAA 78
Query 445 CCTAAAAAAGCCTTCAGATACCGCCCCTCCTTTAGAACACAAGAAAGGGATCACACTGGAGAGAAACCCAATGC 518
||||||||||||||||||||.|.|||||||||.|||||||||||||||||||||||||||.||||||||.||||
Sbjct 79 CCTAAAAAAGCCTTCAGATATCACCCCTCCTTGAGAACACAAGAAAGGGATCACACTGGAAAGAAACCCTATGC 152
Query 519 TTGTAAAGTATGTGGAAAAACCTTTATTTCCCATTCAAGTGTTCGAAGACACATGGTAATGCACAGTGGGGATG 592
||||||||.|||||||||||.|.||||||.|||||||||..|||.|||||||||||||.|||||||||||||||
Sbjct 153 TTGTAAAGAATGTGGAAAAAACATTATTTACCATTCAAGCATTCAAAGACACATGGTAGTGCACAGTGGGGATG 226
Query 593 GACCTTATAAATGTAAGTTTTGTGGGAAAGCATTCCATTGTCTCAGATTATATCTTATCCATGAAAGAATTCAC 666
||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||.||||
Sbjct 227 GACCTTATAAATGTAAGTTTTGTGGGAAAGCATTCCATTGTCTCAGTTTATATCTTATCCATGAAAGAACTCAC 300
Query 667 ACTGGAGAGAAACCATGTGAATGTAAACAGTGTGGTAAATCCTTTAGTTATTCTGCTACCCATCGAATACATAA 740
||||||||||||||.|.||||||||||||.|||||||||||.||||||||||||||||||||||||||||||.|
Sbjct 301 ACTGGAGAGAAACCGTATGAATGTAAACAATGTGGTAAATCTTTTAGTTATTCTGCTACCCATCGAATACATGA 374
Query 741 AAGAACTCACACTGGAGAAAAGCCTTATGAATATCAGGAGTGTGGGAAAGCATTTCATAGTCCCAGATCCTATC 814
|||||||||||.||||||||||||||||||||.||||||.||||||||||||||.||||||||||||||||.||
Sbjct 375 AAGAACTCACATTGGAGAAAAGCCTTATGAATGTCAGGAATGTGGGAAAGCATTCCATAGTCCCAGATCCTGTC 448
Query 815 GTAGACATGAAAGGATTCACATGGGAGAAAAGGCTTATCAATGTAAGGAATGTGGAAAAGCATTCACGTGTCCC 888
..|||||||||||||.||||||||||||.|||||||||||||||||||||||||||||||||||||.|||||||
Sbjct 449 ACAGACATGAAAGGAGTCACATGGGAGAGAAGGCTTATCAATGTAAGGAATGTGGAAAAGCATTCATGTGTCCC 522
Query 889 CGTTATGTTCGTATACATGAAAGGACCCACTCTAGGAAAAATCTCTATGAATGTAAGCAGTGTGGGAAAGCATT 962
|||||||||||||.|||||||||||||||||||||||||||.||.|||||||||||||||||||||||||||||
Sbjct 523 CGTTATGTTCGTAGACATGAAAGGACCCACTCTAGGAAAAAACTTTATGAATGTAAGCAGTGTGGGAAAGCATT 596
Query 963 ATCCTCTCTTACAAGTTTTCAAACACACGTAAGATTGCACTCTGGAGAAAGACCTTATGAATGTAAGATATGTG 1036
||||||||||||||||||||||||||||.|||||.|||||||||||||||||||||||||||||||||.|||||
Sbjct 597 ATCCTCTCTTACAAGTTTTCAAACACACATAAGAATGCACTCTGGAGAAAGACCTTATGAATGTAAGACATGTG 670
Query 1037 GAAAAGACTTTTGTTCTGTGAATTCATTTCAAAGACATGAAAAAATTCACAGTGGAGAGAAACCCTATAAATGT 1110
|.||||.|||||.|||||..||.||||||||||||||||||||||.||||||||||||||||||.||||||||.
Sbjct 671 GGAAAGGCTTTTATTCTGCCAAGTCATTTCAAAGACATGAAAAAACTCACAGTGGAGAGAAACCGTATAAATGC 744
Query 1111 AAGCAGTGTGGTAAAGCCTTCCCTCATTCCAGTTCCCTTCGATATCATGAAAGGACTCACACTGGAGAGAAACC 1184
|||||.|||||||||||||||.|||.||||.|||||.|||||||||||||||||||||||||||||||||||||
Sbjct 745 AAGCAATGTGGTAAAGCCTTCACTCGTTCCGGTTCCTTTCGATATCATGAAAGGACTCACACTGGAGAGAAACC 818
Query 1185 CTATGAGTGTAAGCAATGTGGGAAAGCCTTCAGATCTGCCTCACACCTTCGAGTGCATGGTAGGACTCACACTG 1258
||||||||||||||||||||||||||||||||||||||||.||.|.||||.|.|||||||||||||||||||||
Sbjct 819 CTATGAGTGTAAGCAATGTGGGAAAGCCTTCAGATCTGCCCCAAATCTTCAATTGCATGGTAGGACTCACACTG 892
Query 1259 GAGAGAAACCGTATGAATGTAAGGAATGTGGGAAAGCCTTCAGATATGTGAATAACCTTCAAAGTCATGAAAGG 1332
||||||||||||||.||||||||||||||||||||||.|||||||.|| |||
Sbjct 893 GAGAGAAACCGTATCAATGTAAGGAATGTGGGAAAGCTTTCAGATCTG-------CCT---------------- 943
Query 1333 ACACAAACACACATAAGAATACACTCTGGAGAAAGACGTTATAAATGTAAGATATGTGGGAAAGGCTTTTATTG 1406
||||..|..||||.|| || |||.|||
Sbjct 944 -------CACAACTTCGAATCCA-TC--------------------GTAGGAT--------------------- 968
Query 1407 TCCCAAATCATTTCAAAGACATGAAAAAACTCACACTGGAGAGAAACTCTATGAATGCAAGCAACGTTCAGTAG 1480
|||||||||||||||||.|||||||||.|||.||.|| .|.|.
Sbjct 969 ------------------------------TCACACTGGAGAGAAACCCTATGAATGTAAGAAATGT--GGGAA 1010
Query 1481 TTCCTTCAG-TAGTTCCAGTTCCTTTTGATATCATGAAAGGACTCACACTGGAGAGAAGCCCTATAAATGCGAG 1553
..||||||| ||..||||| ..||||.|||.||||||||||||.||.|| |.|.||| ||| |
Sbjct 1011 AGCCTTCAGATATGTCCAG-AACTTTCGATTTCATGAAAGGACACAAAC---ACATAAG-------AAT----G 1069
Query 1554 CAATGTGG-GAAAG-CCTTCAGAGCTGTGTCAATCCTTTGAATGCATGGTAGGACTCACCCTGAAGAGAAACCC 1625
||.|.||| ||||| ||||.
Sbjct 1070 CACTCTGGAGAAAGACCTTA------------------------------------------------------ 1089
Query 1626 TATGAGTGTGAGCAATGACGGAAAGCCTTCAGATCTGCCCCACACCTTTGAATACGTGGTAGGACACACAATGG 1699
Sbjct 1090 -------------------------------------------------------------------------- 1089
Query 1700 AGAGAAGCCCTATGCATGTAAGGAATGTGGGAAACCCTTCGGATCTGCCCATAACCTTCAAAGTCATGAAAGGA 1773
Sbjct 1090 -------------------------------------------------------------------------- 1089
Query 1774 CACAAACACACA 1785
Sbjct 1090 ------------ 1089
