Nucleotide Global Alignment

Description

Query:
ccsbBroad304_15236
Subject:
NM_001364730.1
Aligned Length:
1845
Identities:
1549
Gaps:
207

Alignment

Query    1  ------------------------------------------------------------ATGGACCCAGTGGC  14
                                                                        ||||||||||||||
Sbjct    1  ATGCCCTGCTGTAGTCACAGGAGGTGTAGAGAGGACCCCGGGACATCTGAAAGCCAGGAAATGGACCCAGTGGC  74

Query   15  TTTTAAGGATGTGGCTGTGAACTTCACCCAGGAGGAGTGGGCTTTGCTGGATATTTCCCAGAGGAAACTCTACA  88
            .|||.|.|||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  CTTTGATGATGTTGCTGTGAACTTCACCCAGGAGGAGTGGGCTTTGCTGGATATTTCCCAGAGGAAACTCTACA  148

Query   89  GGGAAGTGATGCTGGAAACTTTCAGGAACCTGACCTCTTTAGGAAAAAGGTGGAAAGACCAGAACATTGAATAT  162
            .|||||||||||||||||||||||||||||||||||||.||||||||||.||||||||||||||||||||||||
Sbjct  149  AGGAAGTGATGCTGGAAACTTTCAGGAACCTGACCTCTGTAGGAAAAAGTTGGAAAGACCAGAACATTGAATAT  222

Query  163  GAGCACCAAAACCCCAGGAGAAACTTCAGGAGTCTCATAGAAGAAAAAGTCAATGAAATTAAAGATGACAGTCA  236
            |||.||||||||||||||||||||||||||||||||||||||.|.|||||||||||||||||||||||||||||
Sbjct  223  GAGTACCAAAACCCCAGGAGAAACTTCAGGAGTCTCATAGAAAAGAAAGTCAATGAAATTAAAGATGACAGTCA  296

Query  237  TTGTGGAGAAACTTTTACCCCAGTTCCAGATGACAGACTGAACTTCCAGGAGAAGAAAGCTTCTCCTGAAGTAA  310
            ||||||||||||||||||||..||||||||||||||.|||||||||||||||||||||||||||||||||.|||
Sbjct  297  TTGTGGAGAAACTTTTACCCAGGTTCCAGATGACAGGCTGAACTTCCAGGAGAAGAAAGCTTCTCCTGAAATAA  370

Query  311  AATCATGTGAAAGCTTTGTGTGTGGAGAAGTTGGCCTAGGTAACTCATCTTTTAATATGAACATCAGAGGTGAC  384
            ||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  AATCATGTGACAGCTTTGTGTGTGGAGAAGTTGGCCTAGGTAACTCATCTTTTAATATGAACATCAGAGGTGAC  444

Query  385  ATTGGACACAAGGCATATGAGTATCAGGAATATGGACCAAAGCCATGTAAGTGTCAACAACCTAAAAAAGCCTT  458
            ||||||||||||||.|||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||
Sbjct  445  ATTGGACACAAGGCCTATGAGTATCAGGAATATGGACCGAAGCCATGTAAGTGTCAACAACCTAAAAAAGCCTT  518

Query  459  CAGATACCGCCCCTCCTTTAGAACACAAGAAAGGGATCACACTGGAGAGAAACCCAATGCTTGTAAAGTATGTG  532
            ||||||.|.|||||||||||||||||.|.||||||||||||||||||||||||||.||||||||||||.|||||
Sbjct  519  CAGATATCACCCCTCCTTTAGAACACCACAAAGGGATCACACTGGAGAGAAACCCTATGCTTGTAAAGAATGTG  592

Query  533  GAAAAACCTTTATTTCCCATTCAAGTGTTCGAAGACACATGGTAATGCACAGTGGGGATGGACCTTATAAATGT  606
            |||||||.|||||||||||||||||..|||.|||||||.|||||||||||||||||||||||||||||||||||
Sbjct  593  GAAAAACTTTTATTTCCCATTCAAGCATTCAAAGACACGTGGTAATGCACAGTGGGGATGGACCTTATAAATGT  666

Query  607  AAGTTTTGTGGGAAAGCATTCCATTGTCTCAGATTATATCTTATCCATGAAAGAATTCACACTGGAGAGAAACC  680
            ||.||||||||||||||.||||||||||||||.|||||||||||||||||||||||||||||||||||||||||
Sbjct  667  AAATTTTGTGGGAAAGCCTTCCATTGTCTCAGTTTATATCTTATCCATGAAAGAATTCACACTGGAGAGAAACC  740

Query  681  ATGTGAATGTAAACAGTGTGGTAAATCCTTTAGTTATTCTGCTACCCATCGAATACATAAAAGAACTCACACTG  754
            ||.||||||||||||.|||||||||||||||||||||||||||||||.|||||||||..|||||||||||||||
Sbjct  741  ATATGAATGTAAACAATGTGGTAAATCCTTTAGTTATTCTGCTACCCTTCGAATACACGAAAGAACTCACACTG  814

Query  755  GAGAAAAGCCTTATGAATATCAGGAGTGTGGGAAAGCATTTCATAGTCCCAGATCCTATCGTAGACATGAAAGG  828
            ||||||||||||||||||.||||.|.||||||||||||||||||||||||||||.|||||||||||||||||||
Sbjct  815  GAGAAAAGCCTTATGAATGTCAGCAATGTGGGAAAGCATTTCATAGTCCCAGATGCTATCGTAGACATGAAAGG  888

Query  829  ATTCACATGGGAGAAAAGGCTTATCAATGTAAGGAATGTGGAAAAGCATTCACGTGTCCCCGTTATGTTCGTAT  902
            |||||||.||||||.||||||||||||||||||||||||||||||||||||||||||||||..|||||||||||
Sbjct  889  ATTCACACGGGAGAGAAGGCTTATCAATGTAAGGAATGTGGAAAAGCATTCACGTGTCCCCAGTATGTTCGTAT  962

Query  903  ACATGAAAGGACCCACTCTAGGAAAAATCTCTATGAATGTAAGCAGTGTGGGAAAGCATTATCCTCTCTTACAA  976
            |||||||||||||||||||||||||||.|.|||||||||||.||||||||||||||||||||||||||||||||
Sbjct  963  ACATGAAAGGACCCACTCTAGGAAAAAACCCTATGAATGTACGCAGTGTGGGAAAGCATTATCCTCTCTTACAA  1036

Query  977  GTTTTCAAACACACGTAAGATTGCACTCTGGAGAAAGACCTTATGAATGTAAGATATGTGGAAAAGACTTTTGT  1050
            ||||||||||||||.|||||.||||||||||||||||||||||||||||||||||||||||.||||.|||||||
Sbjct 1037  GTTTTCAAACACACATAAGAATGCACTCTGGAGAAAGACCTTATGAATGTAAGATATGTGGGAAAGGCTTTTGT  1110

Query 1051  TCTGTGAATTCATTTCAAAGACATGAAAAAATTCACAGTGGAGAGAAACCCTATAAATGTAAGCAGTGTGGTAA  1124
            ||||..|||||||||||||||||||||||||.|||||||||||||||||||||||||||.|||||.||||||||
Sbjct 1111  TCTGCCAATTCATTTCAAAGACATGAAAAAACTCACAGTGGAGAGAAACCCTATAAATGCAAGCAATGTGGTAA  1184

Query 1125  AGCCTTCCCTCATTCCAGTTCCCTTCGATATCATGAAAGGACTCACACTGGAGAGAAACCCTATGAGTGTAAGC  1198
            |||||||..||||||||||||||||||.|||||||||||||.||||||||||||||||||||||||||||||||
Sbjct 1185  AGCCTTCATTCATTCCAGTTCCCTTCGTTATCATGAAAGGATTCACACTGGAGAGAAACCCTATGAGTGTAAGC  1258

Query 1199  AATGTGGGAAAGCCTTCAGATCTGCCTCACACCTTCGAGTGCATGGTAGGACTCACACTGGAGAGAAACCGTAT  1272
            ||||||||||.||||||||||||.||||||||||||.|.||||||||||||||||||||||||||||.||.|||
Sbjct 1259  AATGTGGGAAGGCCTTCAGATCTTCCTCACACCTTCAATTGCATGGTAGGACTCACACTGGAGAGAAGCCCTAT  1332

Query 1273  GAATGTAAGGAATGTGGGAAAGCCTTCAGATATGTGAATAACCTTCAAAGTCATGAAAGGACACAAACACACAT  1346
            ||||||.||||||||||||||||||||||||.|.||||.|||||||||||||||||||||||||||||||||.|
Sbjct 1333  GAATGTCAGGAATGTGGGAAAGCCTTCAGATCTATGAAGAACCTTCAAAGTCATGAAAGGACACAAACACACGT  1406

Query 1347  AAGAATACACTCTGGAGAAAGACGTTATAAATGTAAGATATGTGGGAAAGGCTTTTATTGTCCCAAATCATTTC  1420
            |||||||||||||||||||||||.|||||||||||||.||||||||||||||||||||||||||||||||||.|
Sbjct 1407  AAGAATACACTCTGGAGAAAGACCTTATAAATGTAAGCTATGTGGGAAAGGCTTTTATTGTCCCAAATCATTGC  1480

Query 1421  AAAGACATGAAAAAACTCACACTGGAGAGAAACTCTATGAATGCAAGCAACGTTCAGTAGTTCCTTCAGTAGTT  1494
            ||||||||||||||||||||||||||||||||||||||||||||||||||.||...|.||  ||||||||||||
Sbjct 1481  AAAGACATGAAAAAACTCACACTGGAGAGAAACTCTATGAATGCAAGCAATGTGGTGAAG--CCTTCAGTAGTT  1552

Query 1495  CCAGTTCCTTTTGATATCATGAAAGGACTCACACTGGAGAGAAGCCCTATAAATGCGAGCAATGTGGGAAAGCC  1568
            |||||||||||.||||.||||||||||||||||||||||||||.||||||||||||.|||||||||||||||||
Sbjct 1553  CCAGTTCCTTTCGATACCATGAAAGGACTCACACTGGAGAGAAACCCTATAAATGCAAGCAATGTGGGAAAGCC  1626

Query 1569  TTCAGAGCTGTGTCAATCCTTTGAATGCATGGTAGGACTCACCCTGAAGAGAAACCCTATGAGTGTGAGCAATG  1642
            ||||||||||..|||.|||||.||||||||||||||||||||||||||||.|||||||||||||||.|||||  
Sbjct 1627  TTCAGAGCTGCCTCAGTCCTTCGAATGCATGGTAGGACTCACCCTGAAGATAAACCCTATGAGTGTAAGCAA--  1698

Query 1643  ACGGAAAGCCTTCAGATCTGCCCCACACCTTTGAATACGTGGTAGGACACACAATGGAGAGAAGCCCTATGCAT  1716
                                                                                      
Sbjct 1699  --------------------------------------------------------------------------  1698

Query 1717  GTAAGGAATGTGGGAAACCCTTCGGATCTGCCCATAACCTTCAAAGTCATGAAAGGACACAAACACACA  1785
                                                                                 
Sbjct 1699  ---------------------------------------------------------------------  1698

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