Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_15236
- Subject:
- NM_001367173.2
- Aligned Length:
- 1800
- Identities:
- 1053
- Gaps:
- 627
Alignment
Query 1 AT------GGACCCAGTGGCTTTTAAGGATGTGGCTGTGAACTTCACCCAGGAGGAGTGGGCTTTGCTGGATAT 68
|| ||||||.|||||.|.|.|||||||.|||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTTTCAGGACCCTGTGGCCTGTGAGGATGTTGCTGTGAACTTCACCCAGGAGGAGTGGGCTTTGCTGGATAT 74
Query 69 TTCCCAGAGGAAACTCTACAGGGAAGTGATGCTGGAAACTTTCAGGAACCTGACCTCTTTAGGAAAAAGGTGGA 142
|||.||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||.||||.|||||
Sbjct 75 TTCGCAGAGGAAACTCTACAGGGAAGTGATGCTGGAAACTTTCAGGAACCTGACCTCTATAGGGAAAAAGTGGA 148
Query 143 AAGACCAGAACATTGAATATGAGCACCAAAACCCCAGGAGAAACTTCAGGAGTCTCATAGAAGAAAAAGTCAAT 216
|||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||..||.||||||
Sbjct 149 AAGACCAGAACATTGAATATGAGTACCAAAACCCCAGGAGAAACTTCAGGAGTCTCATAGAAGGGAATGTCAAT 222
Query 217 GAAATTAAAGATGACAGTCATTGTGGAGAAACTTTTACCCCAGTTCCAGATGACAGACTGAACTTCCAGGAGAA 290
|||||||||||.||||||||||||||||||||||||||||..||||||||||||||.|||||||||||||||||
Sbjct 223 GAAATTAAAGAAGACAGTCATTGTGGAGAAACTTTTACCCAGGTTCCAGATGACAGGCTGAACTTCCAGGAGAA 296
Query 291 GAAAGCTTCTCCTGAAGTAAAATCATGTGAAAGCTTTGTGTGTGGAGAAGTTGGCCTAGGTAACTCATCTTTTA 364
|||||||||||||||||.||||||||||||.|.||||||.|||||||||||||||.||||||||||||||||||
Sbjct 297 GAAAGCTTCTCCTGAAGCAAAATCATGTGATAACTTTGTATGTGGAGAAGTTGGCATAGGTAACTCATCTTTTA 370
Query 365 ATATGAACATCAGAGGTGACATTGGACACAAGGCATATGAGTATCAGGAATATGGACCAAAGCCATGTAAGTGT 438
|||||||||||||||||||||||||.|||||||||||.|||||||||||.||||.|||||||||||.|||||||
Sbjct 371 ATATGAACATCAGAGGTGACATTGGGCACAAGGCATACGAGTATCAGGACTATGCACCAAAGCCATATAAGTGT 444
Query 439 CAACAACCTAAAAAAGCCTTCAGATACCGCCCCTCCTTTAGAACACAAGAAAGGGATCACACTGGAGAGAAACC 512
|||||||||||.||||||||||||||.|.|||||||||||||||||||||||||.|||||||.|||||||||||
Sbjct 445 CAACAACCTAAGAAAGCCTTCAGATATCACCCCTCCTTTAGAACACAAGAAAGGAATCACACCGGAGAGAAACC 518
Query 513 CAATGCTTGTAAAGTATGTGGAAAAACCTTTATTTCCCATTCAAGTGTTCGAAGACACATGGTAATGCACAGTG 586
|.||||||||||||.||||||||||||||||||||||||||||.|..|||||||||.|||||||||||||||||
Sbjct 519 CTATGCTTGTAAAGAATGTGGAAAAACCTTTATTTCCCATTCAGGCATTCGAAGACGCATGGTAATGCACAGTG 592
Query 587 GGGATGGACCTTATAAATGTAAGTTTTGTGGGAAAGCATTCCATTGTCTCAGATTATATCTTATCCATGAAAGA 660
|||||||||||||||||||||||||||||||||||||..|||||||||||||||||||||||||||||||||||
Sbjct 593 GGGATGGACCTTATAAATGTAAGTTTTGTGGGAAAGCTGTCCATTGTCTCAGATTATATCTTATCCATGAAAGA 666
Query 661 ATTCACACTGGAGAGAAACCATGTGAATGTAAACAGTGTGGTAAATCCTTTAGTTATTCTGCTACCCATCGAAT 734
|.||||||||||||||||||.|.||||||||||||.||||.|||||||||||||||||||||||||||||||||
Sbjct 667 ACTCACACTGGAGAGAAACCGTATGAATGTAAACAATGTGTTAAATCCTTTAGTTATTCTGCTACCCATCGAAT 740
Query 735 ACATAAAAGAACTCACACTGGAGAAAAGCCTTATGAATATCAGGAGTGTGGGAAAGCATTTCATAGTCCCAGAT 808
||||.|||||||||||||||||||||||||||||||||.||||.|.||||||||||||||.||||||.||||.|
Sbjct 741 ACATGAAAGAACTCACACTGGAGAAAAGCCTTATGAATGTCAGCAATGTGGGAAAGCATTCCATAGTTCCAGTT 814
Query 809 CCTATCGTAGACATGAAAGGATTCACATGGGAGAAAAGGCTTATCAATGTAAGGAATGTGGAAAAGCATTCACG 882
|.|.|| ||||
Sbjct 815 CTTTTC---------------------------------------------------------AAGC------- 824
Query 883 TGTCCCCGTTATGTTCGTATACATGAAAGGACCCACTCTAGGAAAAATCTCTATGAATGTAAGCAGTGTGGGAA 956
||||.||||.||||||.||.||..|||.|..|||||||||||.||.|||||.||
Sbjct 825 --------------------ACATAAAAGAACCCACACTGGGGGAAAGCCATATGAATGTAAACAATGTGGCAA 878
Query 957 AGCATTATCCTCTCTTACAAGTTTTCAAACACACGTAAGATTGCACTCTGGAGAAAGACCTTATGAATGTAAGA 1030
||||| || ||| ||| |||
Sbjct 879 ------ATCCT-TC-----AGT--------------------------TGG----------------TGT---- 894
Query 1031 TATGTGGAAAAGACTTTTGTTCTGTGAATTCATTTCAAAGACATGAAAAAATTCACAGTGGAGAGAAACCCTAT 1104
.||||.|||||||.||||||||.||.|||||.|||.|||||.||||.|
Sbjct 895 --------------------------CATTCCTTTCAAATACATGAAAGAACTCACACTGGGGAGAAGCCCTGT 942
Query 1105 AAATGTAAGC-AGTGTGGTAAAGCCTTCCCTCATTCCAGTTCC---CTTCGATATCATGAAAGGACTCACACTG 1174
.||||| ||| |.|||..||||||.||||.|..||.|||.||| |||.|| |||.||||||.||||||.|
Sbjct 943 GAATGT-AGCAAATGTAATAAAGCATTCCGTAGTTACAGATCCTATCTTAGA---CATAAAAGGAGTCACACGG 1012
Query 1175 GAGAGAAACCCTATGAGTGTAAGCAATGTGGGAAAGCCTTCAGATCTGCC---TCACACCTTCG-AGTGCATGG 1244
|||||||.||.|||.|.||||||.|||||.|.|||||.||||..|.|.|| || |||||| || .||||.
Sbjct 1013 GAGAGAAGCCTTATCAATGTAAGGAATGTAGAAAAGCATTCACGTATCCCAGTTC---CCTTCGTAG-ACATGA 1082
Query 1245 TAGGACTCACACTG-GAGAGAAACCGTATGAATGTAAGGAATGTGGGAAAGCCTTCAGATATGTGAATAACCTT 1317
.|||||.|||.||| || |.|||||.||||||||||||.|.||||||||||| ||.|.|||
Sbjct 1083 AAGGACCCACTCTGCGA-AAAAACCTTATGAATGTAAGCAGTGTGGGAAAGC--------------ATTATCTT 1141
Query 1318 CAAAGTCATGAAAGGACACAAACACACATAAGAATACACTCTGGAGAAAGACGTTATAAATGTAAGATATGTGG 1391
..||||..| |||||||||.|||||||.|.||||||||||||||.|||
Sbjct 1142 ATAAGTTTT---------CAAACACACCTAAGAATGCGCTCTGGAGAAAGACCTTA------------------ 1188
Query 1392 GAAAGGCTTTTATTGTCCCAAATCATTTCAAAGACATGAAAAAACTCACACTGGAGAGAAACTCTATGAATGCA 1465
Sbjct 1189 -------------------------------------------------------------------------- 1188
Query 1466 AGCAACGTTCAGTAGTTCCTTCAGTAGTTCCAGTTCCTTTTGATATCATGAAAGGACTCACACTGGAGAGAAGC 1539
Sbjct 1189 -------------------------------------------------------------------------- 1188
Query 1540 CCTATAAATGCGAGCAATGTGGGAAAGCCTTCAGAGCTGTGTCAATCCTTTGAATGCATGGTAGGACTCACCCT 1613
Sbjct 1189 -------------------------------------------------------------------------- 1188
Query 1614 GAAGAGAAACCCTATGAGTGTGAGCAATGACGGAAAGCCTTCAGATCTGCCCCACACCTTTGAATACGTGGTAG 1687
Sbjct 1189 -------------------------------------------------------------------------- 1188
Query 1688 GACACACAATGGAGAGAAGCCCTATGCATGTAAGGAATGTGGGAAACCCTTCGGATCTGCCCATAACCTTCAAA 1761
Sbjct 1189 -------------------------------------------------------------------------- 1188
Query 1762 GTCATGAAAGGACACAAACACACA 1785
Sbjct 1189 ------------------------ 1188
