Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_15286
- Subject:
- NR_125731.1
- Aligned Length:
- 3922
- Identities:
- 1872
- Gaps:
- 1856
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GCCACCAAACGCCGGTTAAACGACCTCGGAGACTGCTGTGCGGAGAGGACTGGGAAACCGGTCCCCACACACTG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TCCACGCTGGCTCCCCACGGAGGCCCACCCACACCCGCGGCCCGGGGCAAGATGCAGTGATCTCAGCCCTCCCG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CTCCTCCGCACTTCCGCCTCAGTATGGCCTCACAGCTGCAGGTGTTTTCGCCCCCATCAGTGTCGTCGAGTGCC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TTCTGCAGTGCAAAGAAACTGAAAATAGAGCCCTCTGGCTGGGATGTTTCAGGACAGAGCAGCAACGACAAATA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CTATACCCACAGCAAAACCCTCCCAGCTACACAAGGGCAAGCCAGCTCCTCTCACCAGGTAGCAAATTTCAATC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TTCCTGCTTACGACCAGGGCCTCCTTCTCCCAGCTCCTGCCGTGGAGCATATTGTGGTAACAGCTGCTGATAGC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TCAGGCAGCGCCGCTACAGCAACCTTCCAAAGCAGCCAGACCCTGACTCACAGGAGCAACGTTTCTTTGCTTGA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GCCATATCAAAAATGTGGATTGAAGAGAAAGAGTGAGGAAGTGGAGAGCAACGGTAGCGTGCAGATCATAGAAG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 AACACCCCCCTCTCATGCTGCAGAACAGAACCGTGGTGGGTGCTGCTGCCACGACCACCACTGTGACCACCAAG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 AGTAGCAGTTCCAGCGGAGAAGGGGATTACCAGCTGGTCCAGCATGAGATCCTTTGCTCTATGACCAACAGCTA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TGAAGTCCTGGAGTTCCTAGGCCGGGGGACATTTGGACAGGTGGCAAAGTGCTGGAAGCGGAGCACCAAGGAAA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TTGTGGCCATTAAGATCTTGAAGAACCACCCCTCCTATGCCAGACAAGGACAGATTGAAGTGAGCATCCTTTCC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CGCCTAAGCAGTGAAAATGCTGATGAGTATAACTTTGTCCGTTCTTATGAGTGTTTTCAGCACAAGAATCATAC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CTGCCTTGTGTTTGAGATGTTGGAGCAGAACTTGTACGATTTTCTAAAGCAGAACAAGTTTAGCCCACTGCCAC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TCAAGTACATAAGACCAATCTTGCAGCAGGTGGCCACAGCCCTGATGAAGCTGAAGAGTCTTGGTCTGATTCAT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GCTGACCTTAAACCTGAAAACATAATGCTAGTCGATCCAGTTCGCCAACCCTACCGAGTGAAGGTCATTGACTT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TGGTTCTGCTAGTCATGTTTCCAAAGCCGTGTGTTCAACCTACCTGCAATCACGCTACTACAGAGCTCCTGAAA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TTATCCTTGGATTACCATTCTGTGAAGCTATTGACATGTGGTCACTGGGCTGTGTAATAGCTGAGCTGTTCCTG 1332
Query 1 --ATGG----TTT----TGATGTT-----------TCAGATTCGTTATATTTCACAAACACAAGGCTTGCCAGC 53
|||| ||| ||.||.| |||||||||.|||||||||||||||||||||.|||||||
Sbjct 1333 GGATGGCCTCTTTATCCTGGTGCTTCAGAATACGATCAGATTCGCTATATTTCACAAACACAAGGCCTGCCAGC 1406
Query 54 TGAATATCTTCTCAGTGCCGGAACAAAAACAACCAGGTTTTTCAACAGAGATCCTAATTTGGGGTACCCACTGT 127
|||.||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||
Sbjct 1407 TGAGTATCTTCTCAGTGCCGGAACAAAAACAACCAGGTTTTTTAACAGAGATCCTAATTTGGGGTACCCACTGT 1480
Query 128 GGAGGCTTAAGACACCTGAAGAACATGAACTGGAGACTGGAATAAAATCAAAAGAAGCTCGGAAGTACATTTTT 201
|||||||||||||||||||||||||||||.||||.|||||||||||.|||||||||||||||||||||||||||
Sbjct 1481 GGAGGCTTAAGACACCTGAAGAACATGAATTGGAAACTGGAATAAAGTCAAAAGAAGCTCGGAAGTACATTTTT 1554
Query 202 AATTGCTTAGATGACATGGCTCAGGTGAATATGTCTACGGACCTGGAGGGAACAGACATGTTGGCAGAGAAGGC 275
||.||.||||||||||||||||||||.|||||||||||.|||.|.|||||.|||||.|||||.||||||||.||
Sbjct 1555 AACTGTTTAGATGACATGGCTCAGGTAAATATGTCTACAGACTTAGAGGGGACAGATATGTTAGCAGAGAAAGC 1628
Query 276 AGACCGAAGAGAATACATTGATCTGTTAAAGAAAATGCTCACAATTGATGCAGATAAGAGAATTACCCCTCTAA 349
|||.||.|||||.||.||||||||..|||||||||||||.||.||||||||||||||||||||.||.|||||.|
Sbjct 1629 AGATCGGAGAGAGTATATTGATCTTCTAAAGAAAATGCTGACGATTGATGCAGATAAGAGAATCACGCCTCTGA 1702
Query 350 AAACTCTTAACCATCAGTTTGTGACAATGACTCACCTTTTGGATTTTCCACATAGCAATCATGTTAAGTCTTGT 423
|.|||||||||||.||.||||||||.||||.||||||..||||.|||||.||.||||..||.||||||||.|||
Sbjct 1703 AGACTCTTAACCACCAATTTGTGACGATGAGTCACCTCCTGGACTTTCCTCACAGCAGCCACGTTAAGTCCTGT 1776
Query 424 TTTCAGAACATGGAGATCTGCAAGCGGAGGGTTCACATGTATGATACAGTGAGTCAGATCAAGAGTCCCTTCAC 497
||.|||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||
Sbjct 1777 TTCCAGAACATGGAGATCTGCAAGCGGAGGGTTCACATGTATGACACAGTGAGTCAGATCAAGAGTCCCTTCAC 1850
Query 498 TACACATGTTGCCCCAAATACAAGCACAAATCTAACCATGAGCTTCAGCAATCAGCTCAATACAGTGCACAATC 571
|||||||||.||.||||||||||||||||||||||||||||||||||||||.||||||||.|||||||||||||
Sbjct 1851 TACACATGTCGCTCCAAATACAAGCACAAATCTAACCATGAGCTTCAGCAACCAGCTCAACACAGTGCACAATC 1924
Query 572 AGGCCAGTGTTCTAGCTTCCAGTTCTACTGCAGCAGCTGCTACTCTTTCTCTGGCTAATTCAGATGTCTCACTA 645
||||||||||||||||||||||.||||||||||||||.|||||.||||||||||||||||||||||||||.||.
Sbjct 1925 AGGCCAGTGTTCTAGCTTCCAGCTCTACTGCAGCAGCAGCTACCCTTTCTCTGGCTAATTCAGATGTCTCGCTG 1998
Query 646 CTAAACTACCAGTCAGCTTTGTACCCATCATCTGCTGCACCAGTTCCTGGAGTTGCCCAGCAGGGTGTTTCCTT 719
|||||||||||.||.||||||||||||||.||.||.||.|||||||||||||||||||||||||||||||||||
Sbjct 1999 CTAAACTACCAATCGGCTTTGTACCCATCGTCGGCAGCGCCAGTTCCTGGAGTTGCCCAGCAGGGTGTTTCCTT 2072
Query 720 GCAGCCTGGAACCACCCAGATTTGCACTCAGACAGATCCATTCCAACAGACATTTATAGTATGTCCACCTGCGT 793
.||.|||||||||||||||||.|||||||||||||||||||||||.||.||||||||||||||.||||||||.|
Sbjct 2073 ACAACCTGGAACCACCCAGATCTGCACTCAGACAGATCCATTCCAGCAAACATTTATAGTATGCCCACCTGCTT 2146
Query 794 TTCAAA-------------------------------------------------------------------- 799
||||.|
Sbjct 2147 TTCAGAAGTCGGAGCAAGCGGAAGGAAATGAGGGTCTGGGGGAAACTGAGAGCTCCCCGGGAGGCCAGGAGAGC 2220
Query 800 -----------------------------------------------------------CTGGACTACAAGCAA 814
|||||||||||||||
Sbjct 2221 GGTAGCGGTGTAAGCCAGGGAGAGACCACAGGGGGAGCGCAGGAGCAGATTCACAATCCCTGGACTACAAGCAA 2294
Query 815 CAACAAAGCATTCTGGATTCCCTGTGAGGATGGATAATGCTGTACCAATTGTACCCCAGGCACCAGCTGCTCAG 888
|||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||.||.|||||||||
Sbjct 2295 CAACAAAGCATTCTGGATTCCCTGTGAGGATGGATAATGCTGTGCCAATTGTACCCCAGGCGCCTGCTGCTCAG 2368
Query 889 CCACTACAGATTCAGTCAGGAGTTCTCACGCAGGGAAGCTGTACACCACTAATGGTAGCAACTCTCCACCCTCA 962
||.||.|||||.|||||||||||.|||||.||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369 CCGCTGCAGATCCAGTCAGGAGTACTCACACAGGGAAGCTGTACACCACTAATGGTAGCAACTCTCCACCCTCA 2442
Query 963 AGTAGCCACCATCACACCGCAGTATGCGGTGCCCTTTACTCTGAGCTGCGCAGCCGGCCGGCCGGCGCTGGTTG 1036
|||||||||||||||.|||||||||||||||||||||||.||||||||||||||.|||||||||||||||||||
Sbjct 2443 AGTAGCCACCATCACGCCGCAGTATGCGGTGCCCTTTACCCTGAGCTGCGCAGCAGGCCGGCCGGCGCTGGTTG 2516
Query 1037 AACAGACTGCCGCTGTACTGCAGGCGTGGCCTGGAGGGACTCAGCAAATTCTCCTGCCTTCAACTTGGCAACAG 1110
||||||||||.|||||||||||.||.|||||||||||.||.||.||||||||||||||||||.|.|||||.|||
Sbjct 2517 AACAGACTGCTGCTGTACTGCAAGCCTGGCCTGGAGGAACCCAACAAATTCTCCTGCCTTCAGCCTGGCAGCAG 2590
Query 1111 TTGCCTGGGGTAGCTCTACACAACTCTGTCCAGCCCACAGCAATGATTCCAGAGGCCATGGGGAGTGGACAGCA 1184
.||||.|||||||||||.|||||||||||||||||..|.|||.||||||||||||||||||||||..|.||.||
Sbjct 2591 CTGCCCGGGGTAGCTCTGCACAACTCTGTCCAGCCTGCTGCAGTGATTCCAGAGGCCATGGGGAGCAGCCAACA 2664
Query 1185 GCTAGCTGACTGGAGGAATGCCCACTCTCATGGCAACCAGTACAGCACTATCATGCAGCAGCCATCCTTGCTGA 1258
|||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||.|||||||
Sbjct 2665 GCTAGCTGACTGGAGGAATGCCCACTCTCATGGCAACCAGTACAGCACTATTATGCAGCAGCCATCTTTGCTGA 2738
Query 1259 CTAACCATGTGACATTGGCCACTGCTCAGCCTCTGAATGTTGGTGTTGCCCATGTTGTCAGACAACAACAATCC 1332
|.|||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||.
Sbjct 2739 CCAACCATGTGACCTTGGCCACTGCTCAGCCTCTGAATGTTGGTGTTGCCCATGTTGTCAGACAACAACAGTCT 2812
Query 1333 AGTTCCCTCCCTTCGAAGAAGAATAAGCAGTCAGCTCCAGTCTCTTCCAAGTCCTCTCTAGATGTTCTGCCTTC 1406
||||||||||||||.|||||||||||||||||.||||||||.||.|||||.||||||||.||.||.||||||||
Sbjct 2813 AGTTCCCTCCCTTCAAAGAAGAATAAGCAGTCTGCTCCAGTTTCATCCAAATCCTCTCTGGAAGTCCTGCCTTC 2886
Query 1407 CCAAGTCTATTCTCTGGTTGGGAGCAGTCCCCTCCGCACCACATCTTCTTATAATTCCTTGGTCCCTGTCCAAG 1480
.|||||.|||||||||||||||||.|||||.||.||.|||||||||||||||||||||.|.||.||||||||||
Sbjct 2887 TCAAGTTTATTCTCTGGTTGGGAGTAGTCCTCTTCGTACCACATCTTCTTATAATTCCCTAGTTCCTGTCCAAG 2960
Query 1481 ATCAGCCACAGCCCATCATCATTCCAGATACTCCCAGCCCTCCTGTGAGTGTCATCACTATCCGAAGTGACACT 1554
|.||||..|||||.|||||||||||||||||.||||||||||||||||||||||||||||||||.|||||||||
Sbjct 2961 ACCAGCATCAGCCAATCATCATTCCAGATACCCCCAGCCCTCCTGTGAGTGTCATCACTATCCGTAGTGACACT 3034
Query 1555 GATGAGGAAGAGGACAACAAATACAAGCCCAGTAGCTCTGGACTGAAGCCAAGGTCTAATGTCATCAGTTATGT 1628
|||||.|||||||||||||||||||||||||.||||||..|.||||||.|.|||||||||||||||||||||||
Sbjct 3035 GATGAAGAAGAGGACAACAAATACAAGCCCAATAGCTCGAGCCTGAAGGCGAGGTCTAATGTCATCAGTTATGT 3108
Query 1629 CACTGTCAATGATTCTCCTGACTCTGACTCTTCTTTGAGCAGCCCTTATTCCACTGATACCCTGAGTGCTCTCC 1702
||||||||||||||||||.|||||||||||.||..||||||||||..||.||||.||.||.|||||||||||.|
Sbjct 3109 CACTGTCAATGATTCTCCAGACTCTGACTCCTCCCTGAGCAGCCCACATCCCACAGACACTCTGAGTGCTCTGC 3182
Query 1703 GAGGCAATAGTGGATCCGTTTTGGAGGGGCCTGGCAGAGTTGTGGCAGATGGCACTGGCACCCGCACTATCATT 1776
|.|||||.|||||..||.||.|||||||.|||||||||..||..||||||||||.|||||||||.|||||||||
Sbjct 3183 GGGGCAACAGTGGGACCCTTCTGGAGGGACCTGGCAGACCTGCAGCAGATGGCATTGGCACCCGTACTATCATT 3256
Query 1777 GTGCCTCCACTGAAAACTCAGCTTGGTGACTGCACTGTAGCAACCCAGGCCTCAGGTCTCCTGAGCAATAAGAC 1850
||||||||..|||||||.||||||||.|||||||||||||||||.|||||||||||||||||.||||.||||||
Sbjct 3257 GTGCCTCCTTTGAAAACACAGCTTGGCGACTGCACTGTAGCAACACAGGCCTCAGGTCTCCTTAGCAGTAAGAC 3330
Query 1851 TAAGCCAGTCGCTTCAGTGAGTGGGCAGTCATCTGGATGCTGTATCACCCCCACAGGGTATCGAGCTCAACGCG 1924
.||||||||.||.|||||||||||||||||||||||||||||||||||.|||||.|||||.||.|||||.||.|
Sbjct 3331 CAAGCCAGTGGCCTCAGTGAGTGGGCAGTCATCTGGATGCTGTATCACTCCCACGGGGTACCGGGCTCAGCGAG 3404
Query 1925 GGGGGACCAGTGCAGCACAACCACTCAATCTTAGCCAGAACCAGCAGTCATCGGTGGCTCCAACCTCACAGGAG 1998
||||..||||.||.|..||.||||||||.||||||||| ||
Sbjct 3405 GGGGAGCCAGCGCGGTGCAGCCACTCAACCTTAGCCAG--------GT-------------------------- 3444
Query 1999 AGAAGCAGCAACCCAGCCCCCCGCAGGCAGCAGGCGTTTGTGGCCCCTCTCTCCCAAGCCCCCTACACCTTCCA 2072
|||
Sbjct 3445 --AAG--------------------------------------------------------------------- 3447
Query 2073 GCATGGCAGCCCGCTACACTCGACAGGGCACCCACACCTTGCCCCGGCCCCTGCTCACCTGCCAAGCCAGGCTC 2146
|||| |||| .||||| ||||
Sbjct 3448 -----------CGCT---------AGGG---------------------GCTGCT-ACCT-------------- 3465
Query 2147 ATCTGTATACGTATGCTGCCCCGACTTCTGCTGCTGCACTGGGCTCAACCAGCTCCATTGCTCATCTTTTCTCC 2220
|||||.|||| |||| ||| ||.||
Sbjct 3466 -TCTGTTTACG--------------TTCT------------------------TCC---------CTGTT---- 3487
Query 2221 CCACAGGGTTCCTCAAGGCATGCTGCAGCCTATACCACTCACCCTAGCACTTTGGTGCACCAGGTCCCTGTCAG 2294
|||.|| |||||| ||..|||||
Sbjct 3488 -------GTTACT------------------------------------CTTTGG------AGAACCCTG---- 3508
Query 2295 TGTTGGGCCCAGCCTCCTCACTTCTGCCAGCGTGGCCCCTGCTCAGTACCAACACCAGTTTGCCACCCAATCCT 2368
||||| ||| |||.|| |||.|.|| || |||| |||
Sbjct 3509 --------------------CTTCT---AGC-TGGACC--GCTGAATA--AA---------GCCA---AAT--- 3539
Query 2369 ACATTGGGTCTTCCCGAGGCTCAACAATTTACACTGGATACCCCCTGTCCAAGATCAGCCAGTATTCCTACTTA 2442
||.||||
Sbjct 3540 ---------------GAAGCTC---------------------------------------------------- 3546
