Nucleotide Global Alignment

Description

Query:
ccsbBroad304_15287
Subject:
NM_001301306.1
Aligned Length:
3630
Identities:
2095
Gaps:
1317

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGGCCTCACAGCTGCAGGTGTTTTCGCCCCCATCAGTGTCGTCGAGTGCCTTCTGCAGTGCAAAGAAACTGAA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AATAGAGCCCTCTGGCTGGGATGTTTCAGGACAGAGCAGCAACGACAAATACTATACCCACAGCAAAACCCTCC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CAGCTACACAAGGGCAAGCCAGCTCCTCTCACCAGGTAGCAAATTTCAATCTTCCTGCTTACGACCAGGGCCTC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CTTCTCCCAGCTCCTGCCGTGGAGCATATTGTGGTAACAGCTGCTGATAGCTCAGGCAGCGCCGCTACAGCAAC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CTTCCAAAGCAGCCAGACCCTGACTCACAGGAGCAACGTTTCTTTGCTTGAGCCATATCAAAAATGTGGATTGA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  AGAGAAAGAGTGAGGAAGTGGAGAGCAACGGTAGCGTGCAGATCATAGAAGAACACCCCCCTCTCATGCTGCAG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  AACAGAACCGTGGTGGGTGCTGCTGCCACGACCACCACTGTGACCACCAAGAGTAGCAGTTCCAGCGGAGAAGG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GGATTACCAGCTGGTCCAGCATGAGATCCTTTGCTCTATGACCAACAGCTATGAAGTCCTGGAGTTCCTAGGCC  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GGGGGACATTTGGACAGGTGGCAAAGTGCTGGAAGCGGAGCACCAAGGAAATTGTGGCCATTAAGATCTTGAAG  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  AACCACCCCTCCTATGCCAGACAAGGACAGATTGAAGTGAGCATCCTTTCCCGCCTAAGCAGTGAAAATGCTGA  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  TGAGTATAACTTTGTCCGTTCTTATGAGTGTTTTCAGCACAAGAATCATACCTGCCTTGTGTTTGAGATGTTGG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  AGCAGAACTTGTACGATTTTCTAAAGCAGAACAAGTTTAGCCCACTGCCACTCAAGTACATAAGACCAATCTTG  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  CAGCAGGTGGCCACAGCCCTGATGAAGCTGAAGAGTCTTGGTCTGATTCATGCTGACCTTAAACCTGAAAACAT  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  AATGCTAGTCGATCCAGTTCGCCAACCCTACCGAGTGAAGGTCATTGACTTTGGTTCTGCTAGTCATGTTTCCA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  AAGCCGTGTGTTCAACCTACCTGCAATCACGCTACTACAGAGCTCCTGAAATTATCCTTGGATTACCATTCTGT  1110

Query    1  -----------------------------------------------------ATGG----TTT----TGATGT  13
                                                                 ||||    |||    ||.||.
Sbjct 1111  GAAGCTATTGACATGTGGTCACTGGGCTGTGTAATAGCTGAGCTGTTCCTGGGATGGCCTCTTTATCCTGGTGC  1184

Query   14  T-----------TCAGATTCGTTATATTTCACAAACACAAGGCTTGCCAGCTGAATATCTTCTCAGTGCCGGAA  76
            |           |||||||||.|||||||||||||||||||||.||||||||||.|||||||||||||||||||
Sbjct 1185  TTCAGAATACGATCAGATTCGCTATATTTCACAAACACAAGGCCTGCCAGCTGAGTATCTTCTCAGTGCCGGAA  1258

Query   77  CAAAAACAACCAGGTTTTTCAACAGAGATCCTAATTTGGGGTACCCACTGTGGAGGCTTAAGACACCTGAAGAA  150
            |||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  CAAAAACAACCAGGTTTTTTAACAGAGATCCTAATTTGGGGTACCCACTGTGGAGGCTTAAGACACCTGAAGAA  1332

Query  151  CATGAACTGGAGACTGGAATAAAATCAAAAGAAGCTCGGAAGTACATTTTTAATTGCTTAGATGACATGGCTCA  224
            ||||||.||||.|||||||||||.|||||||||||||||||||||||||||||.||.|||||||||||||||||
Sbjct 1333  CATGAATTGGAAACTGGAATAAAGTCAAAAGAAGCTCGGAAGTACATTTTTAACTGTTTAGATGACATGGCTCA  1406

Query  225  GGTGAATATGTCTACGGACCTGGAGGGAACAGACATGTTGGCAGAGAAGGCAGACCGAAGAGAATACATTGATC  298
            |||.|||||||||||.|||.|.|||||.|||||.|||||.||||||||.|||||.||.|||||.||.|||||||
Sbjct 1407  GGTAAATATGTCTACAGACTTAGAGGGGACAGATATGTTAGCAGAGAAAGCAGATCGGAGAGAGTATATTGATC  1480

Query  299  TGTTAAAGAAAATGCTCACAATTGATGCAGATAAGAGAATTACCCCTCTAAAAACTCTTAACCATCAGTTTGTG  372
            |..|||||||||||||.||.||||||||||||||||||||.||.|||||.||.|||||||||||.||.||||||
Sbjct 1481  TTCTAAAGAAAATGCTGACGATTGATGCAGATAAGAGAATCACGCCTCTGAAGACTCTTAACCACCAATTTGTG  1554

Query  373  ACAATGACTCACCTTTTGGATTTTCCACATAGCAATCATGTTAAGTCTTGTTTTCAGAACATGGAGATCTGCAA  446
            ||.||||.||||||..||||.|||||.||.||||..||.||||||||.|||||.||||||||||||||||||||
Sbjct 1555  ACGATGAGTCACCTCCTGGACTTTCCTCACAGCAGCCACGTTAAGTCCTGTTTCCAGAACATGGAGATCTGCAA  1628

Query  447  GCGGAGGGTTCACATGTATGATACAGTGAGTCAGATCAAGAGTCCCTTCACTACACATGTTGCCCCAAATACAA  520
            |||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||.||.||||||||||
Sbjct 1629  GCGGAGGGTTCACATGTATGACACAGTGAGTCAGATCAAGAGTCCCTTCACTACACATGTCGCTCCAAATACAA  1702

Query  521  GCACAAATCTAACCATGAGCTTCAGCAATCAGCTCAATACAGTGCACAATCAGGCCAGTGTTCTAGCTTCCAGT  594
            ||||||||||||||||||||||||||||.||||||||.|||||||||||||||||||||||||||||||||||.
Sbjct 1703  GCACAAATCTAACCATGAGCTTCAGCAACCAGCTCAACACAGTGCACAATCAGGCCAGTGTTCTAGCTTCCAGC  1776

Query  595  TCTACTGCAGCAGCTGCTACTCTTTCTCTGGCTAATTCAGATGTCTCACTACTAAACTACCAGTCAGCTTTGTA  668
            ||||||||||||||.|||||.||||||||||||||||||||||||||.||.|||||||||||.||.||||||||
Sbjct 1777  TCTACTGCAGCAGCAGCTACCCTTTCTCTGGCTAATTCAGATGTCTCGCTGCTAAACTACCAATCGGCTTTGTA  1850

Query  669  CCCATCATCTGCTGCACCAGTTCCTGGAGTTGCCCAGCAGGGTGTTTCCTTGCAGCCTGGAACCACCCAGATTT  742
            ||||||.||.||.||.|||||||||||||||||||||||||||||||||||.||.|||||||||||||||||.|
Sbjct 1851  CCCATCGTCGGCAGCGCCAGTTCCTGGAGTTGCCCAGCAGGGTGTTTCCTTACAACCTGGAACCACCCAGATCT  1924

Query  743  GCACTCAGACAGATCCATTCCAACAGACATTTATAGTATGTCCACCTGCGTTTCAAACTGGACTACAAGCAACA  816
            ||||||||||||||||||||||.||.||||||||||||||.||||||||.|||||.||||||||||||||||||
Sbjct 1925  GCACTCAGACAGATCCATTCCAGCAAACATTTATAGTATGCCCACCTGCTTTTCAGACTGGACTACAAGCAACA  1998

Query  817  ACAAAGCATTCTGGATTCCCTGTGAGGATGGATAATGCTGTACCAATTGTACCCCAGGCACCAGCTGCTCAGCC  890
            |||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||.||.|||||||||||
Sbjct 1999  ACAAAGCATTCTGGATTCCCTGTGAGGATGGATAATGCTGTGCCAATTGTACCCCAGGCGCCTGCTGCTCAGCC  2072

Query  891  ACTACAGATTCAGTCAGGAGTTCTCACGCAGGGAAGCTGTACACCACTAATGGTAGCAACTCTCCACCCTCAAG  964
            .||.|||||.|||||||||||.|||||                                               
Sbjct 2073  GCTGCAGATCCAGTCAGGAGTACTCAC-----------------------------------------------  2099

Query  965  TAGCCACCATCACACCGCAGTATGCGGTGCCCTTTACTCTGAGCTGCGCAGCCGGCCGGCCGGCGCTGGTTGAA  1038
                                                                                      
Sbjct 2100  --------------------------------------------------------------------------  2099

Query 1039  CAGACTGCCGCTGTACTGCAGGCGTGGCCTGGAGGGACTCAGCAAATTCTCCTGCCTTCAACTTGGCAACAGTT  1112
                          ||.|||.||.|||||||||||.||.||.||||||||||||||||||.|.|||||.|||.|
Sbjct 2100  --------------ACAGCAAGCCTGGCCTGGAGGAACCCAACAAATTCTCCTGCCTTCAGCCTGGCAGCAGCT  2159

Query 1113  GCCTGGGGTAGCTCTACACAACTCTGTCCAGCCCACAGCAATGATTCCAGAGGCCATGGGGAGTGGACAGCAGC  1186
            |||.|||||||||||.|||||||||||||||||..|.|||.||||||||||||||||||||||..|.||.||||
Sbjct 2160  GCCCGGGGTAGCTCTGCACAACTCTGTCCAGCCTGCTGCAGTGATTCCAGAGGCCATGGGGAGCAGCCAACAGC  2233

Query 1187  TAGCTGACTGGAGGAATGCCCACTCTCATGGCAACCAGTACAGCACTATCATGCAGCAGCCATCCTTGCTGACT  1260
            |||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||.||||||||.
Sbjct 2234  TAGCTGACTGGAGGAATGCCCACTCTCATGGCAACCAGTACAGCACTATTATGCAGCAGCCATCTTTGCTGACC  2307

Query 1261  AACCATGTGACATTGGCCACTGCTCAGCCTCTGAATGTTGGTGTTGCCCATGTTGTCAGACAACAACAATCCAG  1334
            |||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||.||
Sbjct 2308  AACCATGTGACCTTGGCCACTGCTCAGCCTCTGAATGTTGGTGTTGCCCATGTTGTCAGACAACAACAGTCTAG  2381

Query 1335  TTCCCTCCCTTCGAAGAAGAATAAGCAGTCAGCTCCAGTCTCTTCCAAGTCCTCTCTAGATGTTCTGCCTTCCC  1408
            ||||||||||||.|||||||||||||||||.||||||||.||.|||||.||||||||.||.||.||||||||.|
Sbjct 2382  TTCCCTCCCTTCAAAGAAGAATAAGCAGTCTGCTCCAGTTTCATCCAAATCCTCTCTGGAAGTCCTGCCTTCTC  2455

Query 1409  AAGTCTATTCTCTGGTTGGGAGCAGTCCCCTCCGCACCACATCTTCTTATAATTCCTTGGTCCCTGTCCAAGAT  1482
            ||||.|||||||||||||||||.|||||.||.||.|||||||||||||||||||||.|.||.|||||||||||.
Sbjct 2456  AAGTTTATTCTCTGGTTGGGAGTAGTCCTCTTCGTACCACATCTTCTTATAATTCCCTAGTTCCTGTCCAAGAC  2529

Query 1483  CAGCATCAGCCCATCATCATTCCAGATACTCCCAGCCCTCCTGTGAGTGTCATCACTATCCGAAGTGACACTGA  1556
            |||||||||||.|||||||||||||||||.||||||||||||||||||||||||||||||||.|||||||||||
Sbjct 2530  CAGCATCAGCCAATCATCATTCCAGATACCCCCAGCCCTCCTGTGAGTGTCATCACTATCCGTAGTGACACTGA  2603

Query 1557  TGAGGAAGAGGACAACAAATACAAGCCCAGTAGCTCTGGACTGAAGCCAAGGTCTAATGTCATCAGTTATGTCA  1630
            |||.|||||||||||||||||||||||||.||||||..|.||||||.|.|||||||||||||||||||||||||
Sbjct 2604  TGAAGAAGAGGACAACAAATACAAGCCCAATAGCTCGAGCCTGAAGGCGAGGTCTAATGTCATCAGTTATGTCA  2677

Query 1631  CTGTCAATGATTCTCCTGACTCTGACTCTTCTTTGAGCAGCCCTTATTCCACTGATACCCTGAGTGCTCTCCGA  1704
            ||||||||||||||||.|||||||||||.||..||||||||||..||.||||.||.||.|||||||||||.||.
Sbjct 2678  CTGTCAATGATTCTCCAGACTCTGACTCCTCCCTGAGCAGCCCACATCCCACAGACACTCTGAGTGCTCTGCGG  2751

Query 1705  GGCAATAGTGGATCCGTTTTGGAGGGGCCTGGCAGAGTTGTGGCAGATGGCACTGGCACCCGCACTATCATTGT  1778
            |||||.|||||..||.||.|||||||.|||||||||..||..||||||||||.|||||||||.|||||||||||
Sbjct 2752  GGCAACAGTGGGACCCTTCTGGAGGGACCTGGCAGACCTGCAGCAGATGGCATTGGCACCCGTACTATCATTGT  2825

Query 1779  GCCTCCACTGAAAACTCAGCTTGGTGACTGCACTGTAGCAACCCAGGCCTCAGGTCTCCTGAGCAATAAGACTA  1852
            ||||||..|||||||.||||||||.|||||||||||||||||.|||||||||||||||||.||||.||||||.|
Sbjct 2826  GCCTCCTTTGAAAACACAGCTTGGCGACTGCACTGTAGCAACACAGGCCTCAGGTCTCCTTAGCAGTAAGACCA  2899

Query 1853  AGCCAGTCGCTTCAGTGAGTGGGCAGTCATCTGGATGCTGTATCACCCCCACAGGGTATCGAGCTCAACGCGGG  1926
            |||||||.||.|||||||||||||||||||||||||||||||||||.|||||.|||||.||.|||||.||.|||
Sbjct 2900  AGCCAGTGGCCTCAGTGAGTGGGCAGTCATCTGGATGCTGTATCACTCCCACGGGGTACCGGGCTCAGCGAGGG  2973

Query 1927  GGGACCAGTGCAGCACAACCACTCAATCTTAGCCAGAACCAGCAGTCATCGGTGGCTCCAACCTCACAGGAGAG  2000
            ||..||||.||.|..||.||||||||.||||||||||||||||||||||||...|||.|||||||.|||||.||
Sbjct 2974  GGAGCCAGCGCGGTGCAGCCACTCAACCTTAGCCAGAACCAGCAGTCATCGTCAGCTTCAACCTCGCAGGAAAG  3047

Query 2001  AAGCAGCAACCCAGCCCCCCGCAGGCAGCAGGCGTTTGTGGCCCCTCTCTCCCAAGCCCCCTACACCTTCCAGC  2074
            ||||||||||||.||.||||||||.||||||||.|||||||||||.||||||||||||||||||.|||||||||
Sbjct 3048  AAGCAGCAACCCTGCTCCCCGCAGACAGCAGGCATTTGTGGCCCCGCTCTCCCAAGCCCCCTACGCCTTCCAGC  3121

Query 2075  ATGGCAGCCCGCTACACTCGACAGGGCACCCACACCTTGCCCCGGCCCCTGCTCACCTGCCAAGCCAGGCTCAT  2148
            ||||||||||.||.||||||||.||||||||||||.|.|||||.||||||||||||||||||||||||.||||.
Sbjct 3122  ATGGCAGCCCACTGCACTCGACGGGGCACCCACACTTGGCCCCAGCCCCTGCTCACCTGCCAAGCCAGCCTCAC  3195

Query 2149  CTGTATACGTATGCTGCCCCGACTTCTGCTGCTGCACTGGGCTCAACCAGCTCCATTGCTCATCTTTTCTCCCC  2222
            |||||||||||.||||||||.|||||||||||||||.|||||||.|||||.||||||||||||||.||||||||
Sbjct 3196  CTGTATACGTACGCTGCCCCCACTTCTGCTGCTGCATTGGGCTCCACCAGTTCCATTGCTCATCTGTTCTCCCC  3269

Query 2223  ACAGGGTTCCTCAAGGCATGCTGCAGCCTATACCACTCACCCTAGCACTTTGGTGCACCAGGTCCCTGTCAGTG  2296
            .||||||||||||||||||||||||||.||||||||.||||||||||||.|||||||.|||||.||||||||||
Sbjct 3270  CCAGGGTTCCTCAAGGCATGCTGCAGCTTATACCACACACCCTAGCACTCTGGTGCATCAGGTTCCTGTCAGTG  3343

Query 2297  TTGGGCCCAGCCTCCTCACTTCTGCCAGCGTGGCCCCTGCTCAGTACCAACACCAGTTTGCCACCCAATCCTAC  2370
            |.||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||.||.||||||
Sbjct 3344  TCGGGCCCAGCCTCCTCACTTCTGCCAGTGTGGCCCCTGCTCAGTACCAACACCAGTTTGCCACTCAGTCCTAC  3417

Query 2371  ATTGGGTCTTCCCGAGGCTCAACAATTTACACTGGATACCCGCTGAGTCCTACCAAGATCAGCCAGTATTCCTA  2444
            ||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||.||
Sbjct 3418  ATCGGGTCTTCCCGAGGCTCAACAATTTACACTGGATACCCGCTGAGTCCTACCAAGATCAGTCAGTATTCTTA  3491

Query 2445  CTTA  2448
            |||.
Sbjct 3492  CTTG  3495

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