Nucleotide Global Alignment

Description

Query:
ccsbBroad304_15308
Subject:
NM_001346911.1
Aligned Length:
1143
Identities:
940
Gaps:
198

Alignment

Query    1  ATGGAAAAGTATGAAAAATTAGCTAAGACTGGAGAAGGGTCTTATGGGGTTGTATTCAAATGCAGAAACAAAAC  74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGGAAAAGTATGAAAAATTAGCTAAGACTGGAGAAGGGTCTTATGGGGTTGTATTCAAATGCAGAAACAAAAC  74

Query   75  CTCTGGACAAGTAGTAGCTGTTAAAAAATTTGTGGAATCTGAAGATGATCCTGTTGTTAAGAAAATAGCACTAA  148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  CTCTGGACAAGTAGTAGCTGTTAAAAAATTTGTGGAATCTGAAGATGATCCTGTTGTTAAGAAAATAGCACTAA  148

Query  149  GAGAAATACGTATGTTGAAGCAAATTAAAACAATNCCAAATCTTGTGAACCTCATCGAAGGTGTTCAGGAGAAA  222
            ||||||||||||||||||||| ||||||||||  .|||||||||||||||||||||| ||||||||||||| ||
Sbjct  149  GAGAAATACGTATGTTGAAGC-AATTAAAACA--TCCAAATCTTGTGAACCTCATCG-AGGTGTTCAGGAG-AA  217

Query  223  AAAGGAAAATGCATTTAGTTTTTGAATACTGTGATCATACACTTTTAAATGAGCTGGAAAGAAACCCAAATGGA  296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  218  AAAGGAAAATGCATTTAGTTTTTGAATACTGTGATCATACACTTTTAAATGAGCTGGAAAGAAACCCAAATGGA  291

Query  297  GTTGCTGATGGAGTGATCAAAAGCGTATTATGGCAAACACTTCAAGCTCTTAATTTCTGTCATATACATAACTG  370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  292  GTTGCTGATGGAGTGATCAAAAGCGTATTATGGCAAACACTTCAAGCTCTTAATTTCTGTCATATACATAACTG  365

Query  371  TATTCACAGAGATATAAAACCTGAAAATATTCTAATAACTAAGCAAGGAATAATCAAGATTTGTGACTTCGGGT  444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  366  TATTCACAGAGATATAAAACCTGAAAATATTCTAATAACTAAGCAAGGAATAATCAAGATTTGTGACTTCGGGT  439

Query  445  TTGCACAAATTCTGATTCCAGGAGATGCCTACACCGATTATGTAGCTACGAGATGGTACCGAGCTCCTGAACTT  518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  440  TTGCACAAATTCTGATTCCAGGAGATGCCTACACCGATTATGTAGCTACGAGATGGTACCGAGCTCCTGAACTT  513

Query  519  CTTGTGGGAGATACTCAGTATGGTTCTTCAGTCGATATATGGGCTATTGGTTGTGTTTTTGCAGAGCTCCTGAC  592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  514  CTTGTGGGAGATACTCAGTATGGTTCTTCAGTCGATATATGGGCTATTGGTTGTGTTTTTGCAGAGCTCCTGAC  587

Query  593  AGGCCAGCCACTGTGGCCTGGAAAATCAGATGTGGACCAACTTTATCTGATAATCAGAACACTAGGAAAATTAA  666
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  588  AGGCCAGCCACTGTGGCCTGGAAAATCAGATGTGGACCAACTTTATCTGATAATCAGAACACTAGGAAAATTAA  661

Query  667  TCCCAAGACATCAATCAATCTTTAAAAGTAACGGGTTTTTCCATGGCATCAGTATACCTGAGCCAGAAGACATG  740
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  662  TCCCAAGACATCAATCAATCTTTAAAAGTAACGGGTTTTTCCATGGCATCAGTATACCTGAGCCAGAAGACATG  735

Query  741  GAAACTCTTGAGGAAAAGTTCTCAGATGTTCATCCTGTGGCTTCTGAACTTCATGAANGGNTGTCTGAAGATGA  814
            ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||.||.|||||||||||||
Sbjct  736  GAAACTCTTGAGGAAAAGTTCTCAGATGTTCATCCTGTGGC-TCTGAACTTCATGAAGGGGTGTCTGAAGATGA  808

Query  815  ATCCAGATGACAGATTAACCTGTTCCCAACTCCTGGAGAGCTCCTACTTTGATTCTTTTCAAGAGGCCCAAATT  888
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  809  ATCCAGATGACAGATTAACCTGTTCCCAACTCCTGGAGAGCTCCTACTTTGATTCTTTTCAAGAGGCCCAAATT  882

Query  889  AAAAGAAAAGCACGTAATGAAGGAAGAAACAGAAGACGCCAA---CAGGTAC------------TTCC------  941
            ||||||||||||||||||||||||||||||||||||||||||   ||||.||            ||||      
Sbjct  883  AAAAGAAAAGCACGTAATGAAGGAAGAAACAGAAGACGCCAACAGCAGGCACCTAAGTCTGCCTTTCCTAGGCT  956

Query  942  ---GCTCAAAA--------------GT-----------------------------------------------  951
               .|||||||              ||                                               
Sbjct  957  TTTTCTCAAAACCAAGATCTGCCAGGTACAAAGGAATGAAACCCAGACATCTGGGAACCAAATTCTACCCAATG  1030

Query  952  --------------------------------------------------------------------------  951
                                                                                      
Sbjct 1031  GGCCAATATTGCAGAACAGTATGGTGACTGTTATGACAAACATTAATTCTGCAGTTTATCAGGTGACTGTCCTT  1104

Query  952  ---------------------------------  951
                                             
Sbjct 1105  CACTTGCTTTCAGAAAACTTTGAAGTTAAATCG  1137

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