Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_15308
- Subject:
- XR_001738736.1
- Aligned Length:
- 2480
- Identities:
- 734
- Gaps:
- 1745
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GCTATGATTGTGACACTGCACTTTAGCCTAGGCAACAGAGTGAGCCTCTGTTTCCAAAAAAAAAAAGGTACAAG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AGGTTGTGCCTAATTCTGCTTTGTGTAGTAAGATTTGTAAACCAGGTTGTTGATAGATGAAGAGAAATTTACCA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TATGCAGTAAGAAAGCAAGGTAGGAACCTGTAGCCTAGACCAAGGCATATGCAAATACTGCATGTTCAAGAAAT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AGTGACATTGAATTGAATGAACCAGAGTTTCGGGTGCCTGAAGCAGAGTAATAGGGCAGGAAGCTGCATAAAAA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GATGGGCCTGGTTGTGAAGAGCCTCCTTATGAGAGAAGCAGCTAGGAATCAACAGTTTCAGAAACTGGAGAGCA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AGTATCATGAAGATATAAATGGGTTGATGGATTTGTACATAAGGTGATACTTGTATACTTAATGAGAAATTTTT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CTATAGCATGATAGATGGTGGAAATTATATAGGAATTGGATAGATGTGAATTTTATGAGTATTTGACTTTAGTG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GAAGTGTATTTGGTCTCAAAAGAGGAAGGAGATAAAGGTTTTTGTTTTGATTTTGTTTGTTAAAGATGGGAGAT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TTCAGCATGTATCTAAGCAAATGAAAGAAGTGGAAAAGAAATGAGATGGATGAGAAAAGGAGAAGAGAGTCACC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TGTTTAGGGAAGTATGGAGATGCTAAACCTGGCCATGATCACGGGGAGCATTTTGCTAATGCTGAAACAAAGTA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CGTGTGTGCTTATTAACATATAGCATTTCTAAGTTAGTCCTGGGAATAAAATGGGTAAGCTCTAGCCAAAATTC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TCTTTCCCAAGTAATACATTATCTCCACAGAGCATTCATTACATTATTTGTTTCATTGACTTTCTTCCCTAATG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GGTGTCAAACCTGTGTCTGATTCTTAGGCCTCAGGTACTAGTACAATGCTAGGTGAATTAGGAAAATGGCCTCT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GATCCATAGCTGCTTTTCACGCAAAAACCTACAGAAGTCTGCTGAAAAGGTATTTGGATAATTAAACAAGACCG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 AAAAGTAATGACTAATGACAGAGAATCTTGCAAACTGAAGGTCTCTGCCCAGGCAGGGAAACGAACTAATCAAT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 ATTCAACAGTTACGTGTGCTGTTTTTCAGTGCTCTCGATGCCTTGGGAAAGAAGGGGACATGGTGTAATCACAG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TATTAAGGGGAAAGTGGTTGAAATGTTTCCTGAGCGCTCTCATTCAACTTTTGCTCCGTTCACAGCCTGATGCT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 ACAGGCTCGGCCCCGAGGTTATACCCACCAAGAGGAAGTATGTCCGGAATTGGTGGGTTCTTGCAGTCACTGAC 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TTCAAGAATGAAGCCGCGGACCCTCGCGGTGCAGCATTGTACTGCAAGTCAATCGATACAATAATTTAAGTCAC 1406
Query 1 ----------ATGGAAAAGTATGAAAAATTAGCTAAGACTGGAGAAGGGTCTTATGGGGTTGTATTCAAATGCA 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 TTCAGCTATAATGGAAAAGTATGAAAAATTAGCTAAGACTGGAGAAGGGTCTTATGGGGTTGTATTCAAATGCA 1480
Query 65 GAAACAAAACCTCTGGACAAGTAGTAGCTGTTAAAAAATTTGTGGAATCTGAAGATGATCCTGTTGTTAAGAAA 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 GAAACAAAACCTCTGGACAAGTAGTAGCTGTTAAAAAATTTGTGGAATCTGAAGATGATCCTGTTGTTAAGAAA 1554
Query 139 ATAGCACTAAGAGAAATACGTATGTTGAAGCAAATTAAAACAATNCCAAATCTTGTGAACCTCATCGAAGGTGT 212
||||||||||||||||||||||||||||||| |||||||||| .|||||||||||||||||||||| ||||||
Sbjct 1555 ATAGCACTAAGAGAAATACGTATGTTGAAGC-AATTAAAACA--TCCAAATCTTGTGAACCTCATCG-AGGTGT 1624
Query 213 TCAGGAGAAAAAAGGAAAATGCATTTAGTTTTTGAATACTGTGATCATACACTTTTAAATGAGCTGGAAAGAAA 286
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1625 TCAGGAG-AAAAAGGAAAATGCATTTAGTTTTTGAATACTGTGATCATACACTTTTAAATGAGCTGGAAAGAAA 1697
Query 287 CCCAAATGGAGTTGCTGATGGAGTGATCAAAAGCGTATTATGGCAAACACTTCAAGCTCTTAATTTCTGTCATA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1698 CCCAAATGGAGTTGCTGATGGAGTGATCAAAAGCGTATTATGGCAAACACTTCAAGCTCTTAATTTCTGTCATA 1771
Query 361 TACATAACTGTATTCACAGAGATATAAAACCTGAAAATATTCTAATAACTAAGCAAGGAATAATCAAGATTTGT 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1772 TACATAACTGTATTCACAGAGATATAAAACCTGAAAATATTCTAATAACTAAGCAAGGAATAATCAAGATTTGT 1845
Query 435 GACTTCGGGTTTGCACAAATTCTGATTCCAGGAGATGCCTACACCGATTATGTAGCTACGAGATGGTACCGAGC 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1846 GACTTCGGGTTTGCACAAATTCTGATTCCAGGAGATGCCTACACCGATTATGTAGCTACGAGATGGTACCGAGC 1919
Query 509 TCCTGAACTTCTTGTGGGAGATACTCAGTATGGTTCTTCAGTCGATATATGGGCTATTGGTTGTGTTTTTGCAG 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1920 TCCTGAACTTCTTGTGGGAGATACTCAGTATGGTTCTTCAGTCGATATATGGGCTATTGGTTGTGTTTTTGCAG 1993
Query 583 AGCTCCTGACAGGCCAGCCACTGTGGCCTGGAAAATCAGATGTGGACCAACTTTATCTGATAATCAGAACACT- 655
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1994 AGCTCCTGACAGGCCAGCCACTGTGGCCTGGAAAATCAGATGTGGACCAACTTTATCTGATAATCAGAACACTA 2067
Query 656 -------------------------------------------------------------------------- 655
Sbjct 2068 GTCTTAAGAAAAACCTGTTAAGGAAGTTATAATGTTTTTAATTGTGCCTATGTTATAAACGAGGAAACAGAGGC 2141
Query 656 --------------------------------------AGGAAAATTAATCCCAAGACATCAATCAATCTTTAA 691
||||||||||||||||||||||||||||||||||||
Sbjct 2142 TTAGGGAGCTTCCATGATTGGCCTGAAGTCATATAGCCAGGAAAATTAATCCCAAGACATCAATCAATCTTTAA 2215
Query 692 AAGTAACGGGTTTTTCCATGGCATCAGTATACCTGAGCCAGAAGACATGGAAACTCTTGAGGAAAAGTTCTCAG 765
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2216 AAGTAACGGGTTTTTCCATGGCATCAGTATACCTGAGCCAGAAGACATG------------------------- 2264
Query 766 ATGTTCATCCTGTGGCTTCTGAACTTCATGAANGGNTGTCTGAAGATGAATCCAGATGACAGATTAACCTGTTC 839
Sbjct 2265 -------------------------------------------------------------------------- 2264
Query 840 CCAACTCCTGGAGAGCTCCTACTTTGATTCTTTTCAAGAGGCCCAAATTAAAAGAAAAGCACGTAATGAAGGAA 913
Sbjct 2265 -------------------------------------------------------------------------- 2264
Query 914 GAAACAGAAGACGCCAACAGGTACTTCCGCTCAAAAGT 951
Sbjct 2265 -------------------------------------- 2264
