Nucleotide Global Alignment

Description

Query:
ccsbBroad304_15308
Subject:
XR_001738736.1
Aligned Length:
2480
Identities:
734
Gaps:
1745

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GCTATGATTGTGACACTGCACTTTAGCCTAGGCAACAGAGTGAGCCTCTGTTTCCAAAAAAAAAAAGGTACAAG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AGGTTGTGCCTAATTCTGCTTTGTGTAGTAAGATTTGTAAACCAGGTTGTTGATAGATGAAGAGAAATTTACCA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TATGCAGTAAGAAAGCAAGGTAGGAACCTGTAGCCTAGACCAAGGCATATGCAAATACTGCATGTTCAAGAAAT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  AGTGACATTGAATTGAATGAACCAGAGTTTCGGGTGCCTGAAGCAGAGTAATAGGGCAGGAAGCTGCATAAAAA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GATGGGCCTGGTTGTGAAGAGCCTCCTTATGAGAGAAGCAGCTAGGAATCAACAGTTTCAGAAACTGGAGAGCA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  AGTATCATGAAGATATAAATGGGTTGATGGATTTGTACATAAGGTGATACTTGTATACTTAATGAGAAATTTTT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CTATAGCATGATAGATGGTGGAAATTATATAGGAATTGGATAGATGTGAATTTTATGAGTATTTGACTTTAGTG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GAAGTGTATTTGGTCTCAAAAGAGGAAGGAGATAAAGGTTTTTGTTTTGATTTTGTTTGTTAAAGATGGGAGAT  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  TTCAGCATGTATCTAAGCAAATGAAAGAAGTGGAAAAGAAATGAGATGGATGAGAAAAGGAGAAGAGAGTCACC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TGTTTAGGGAAGTATGGAGATGCTAAACCTGGCCATGATCACGGGGAGCATTTTGCTAATGCTGAAACAAAGTA  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CGTGTGTGCTTATTAACATATAGCATTTCTAAGTTAGTCCTGGGAATAAAATGGGTAAGCTCTAGCCAAAATTC  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  TCTTTCCCAAGTAATACATTATCTCCACAGAGCATTCATTACATTATTTGTTTCATTGACTTTCTTCCCTAATG  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  GGTGTCAAACCTGTGTCTGATTCTTAGGCCTCAGGTACTAGTACAATGCTAGGTGAATTAGGAAAATGGCCTCT  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  GATCCATAGCTGCTTTTCACGCAAAAACCTACAGAAGTCTGCTGAAAAGGTATTTGGATAATTAAACAAGACCG  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  AAAAGTAATGACTAATGACAGAGAATCTTGCAAACTGAAGGTCTCTGCCCAGGCAGGGAAACGAACTAATCAAT  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  ATTCAACAGTTACGTGTGCTGTTTTTCAGTGCTCTCGATGCCTTGGGAAAGAAGGGGACATGGTGTAATCACAG  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  TATTAAGGGGAAAGTGGTTGAAATGTTTCCTGAGCGCTCTCATTCAACTTTTGCTCCGTTCACAGCCTGATGCT  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  ACAGGCTCGGCCCCGAGGTTATACCCACCAAGAGGAAGTATGTCCGGAATTGGTGGGTTCTTGCAGTCACTGAC  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  TTCAAGAATGAAGCCGCGGACCCTCGCGGTGCAGCATTGTACTGCAAGTCAATCGATACAATAATTTAAGTCAC  1406

Query    1  ----------ATGGAAAAGTATGAAAAATTAGCTAAGACTGGAGAAGGGTCTTATGGGGTTGTATTCAAATGCA  64
                      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  TTCAGCTATAATGGAAAAGTATGAAAAATTAGCTAAGACTGGAGAAGGGTCTTATGGGGTTGTATTCAAATGCA  1480

Query   65  GAAACAAAACCTCTGGACAAGTAGTAGCTGTTAAAAAATTTGTGGAATCTGAAGATGATCCTGTTGTTAAGAAA  138
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  GAAACAAAACCTCTGGACAAGTAGTAGCTGTTAAAAAATTTGTGGAATCTGAAGATGATCCTGTTGTTAAGAAA  1554

Query  139  ATAGCACTAAGAGAAATACGTATGTTGAAGCAAATTAAAACAATNCCAAATCTTGTGAACCTCATCGAAGGTGT  212
            ||||||||||||||||||||||||||||||| ||||||||||  .|||||||||||||||||||||| ||||||
Sbjct 1555  ATAGCACTAAGAGAAATACGTATGTTGAAGC-AATTAAAACA--TCCAAATCTTGTGAACCTCATCG-AGGTGT  1624

Query  213  TCAGGAGAAAAAAGGAAAATGCATTTAGTTTTTGAATACTGTGATCATACACTTTTAAATGAGCTGGAAAGAAA  286
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1625  TCAGGAG-AAAAAGGAAAATGCATTTAGTTTTTGAATACTGTGATCATACACTTTTAAATGAGCTGGAAAGAAA  1697

Query  287  CCCAAATGGAGTTGCTGATGGAGTGATCAAAAGCGTATTATGGCAAACACTTCAAGCTCTTAATTTCTGTCATA  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1698  CCCAAATGGAGTTGCTGATGGAGTGATCAAAAGCGTATTATGGCAAACACTTCAAGCTCTTAATTTCTGTCATA  1771

Query  361  TACATAACTGTATTCACAGAGATATAAAACCTGAAAATATTCTAATAACTAAGCAAGGAATAATCAAGATTTGT  434
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1772  TACATAACTGTATTCACAGAGATATAAAACCTGAAAATATTCTAATAACTAAGCAAGGAATAATCAAGATTTGT  1845

Query  435  GACTTCGGGTTTGCACAAATTCTGATTCCAGGAGATGCCTACACCGATTATGTAGCTACGAGATGGTACCGAGC  508
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1846  GACTTCGGGTTTGCACAAATTCTGATTCCAGGAGATGCCTACACCGATTATGTAGCTACGAGATGGTACCGAGC  1919

Query  509  TCCTGAACTTCTTGTGGGAGATACTCAGTATGGTTCTTCAGTCGATATATGGGCTATTGGTTGTGTTTTTGCAG  582
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1920  TCCTGAACTTCTTGTGGGAGATACTCAGTATGGTTCTTCAGTCGATATATGGGCTATTGGTTGTGTTTTTGCAG  1993

Query  583  AGCTCCTGACAGGCCAGCCACTGTGGCCTGGAAAATCAGATGTGGACCAACTTTATCTGATAATCAGAACACT-  655
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct 1994  AGCTCCTGACAGGCCAGCCACTGTGGCCTGGAAAATCAGATGTGGACCAACTTTATCTGATAATCAGAACACTA  2067

Query  656  --------------------------------------------------------------------------  655
                                                                                      
Sbjct 2068  GTCTTAAGAAAAACCTGTTAAGGAAGTTATAATGTTTTTAATTGTGCCTATGTTATAAACGAGGAAACAGAGGC  2141

Query  656  --------------------------------------AGGAAAATTAATCCCAAGACATCAATCAATCTTTAA  691
                                                  ||||||||||||||||||||||||||||||||||||
Sbjct 2142  TTAGGGAGCTTCCATGATTGGCCTGAAGTCATATAGCCAGGAAAATTAATCCCAAGACATCAATCAATCTTTAA  2215

Query  692  AAGTAACGGGTTTTTCCATGGCATCAGTATACCTGAGCCAGAAGACATGGAAACTCTTGAGGAAAAGTTCTCAG  765
            |||||||||||||||||||||||||||||||||||||||||||||||||                         
Sbjct 2216  AAGTAACGGGTTTTTCCATGGCATCAGTATACCTGAGCCAGAAGACATG-------------------------  2264

Query  766  ATGTTCATCCTGTGGCTTCTGAACTTCATGAANGGNTGTCTGAAGATGAATCCAGATGACAGATTAACCTGTTC  839
                                                                                      
Sbjct 2265  --------------------------------------------------------------------------  2264

Query  840  CCAACTCCTGGAGAGCTCCTACTTTGATTCTTTTCAAGAGGCCCAAATTAAAAGAAAAGCACGTAATGAAGGAA  913
                                                                                      
Sbjct 2265  --------------------------------------------------------------------------  2264

Query  914  GAAACAGAAGACGCCAACAGGTACTTCCGCTCAAAAGT  951
                                                  
Sbjct 2265  --------------------------------------  2264

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