Nucleotide Global Alignment

Description

Query:
ccsbBroad304_15379
Subject:
NM_001286058.1
Aligned Length:
1288
Identities:
1124
Gaps:
11

Alignment

Query    1  ATGGCCACTTCTTGGGGCACAGTCTTTTTCATGCTGGTGGTATCCTGTGTTTGCAGCGCTGTCTCCCACAG-GA  73
            |||||||||||.|||||..|.|||   |||||||||.|..||.||||.|||.|||||.||||||.|.|||| ||
Sbjct    1  ATGGCCACTTCCTGGGGGGCTGTC---TTCATGCTGATCATAGCCTGCGTTGGCAGCACTGTCTTCTACAGAGA  71

Query   74  ACCAGCAGACTTGGTTTGAGGGTATCTTCCTGTCTTCCATGTGCCCCATCAATGTCAGCGCCAGCACCTTGTAT  147
            | ||||||||.||||||||.|||.|||||.|||||||||||||||||||.||||||||.|||.|||||||.|||
Sbjct   72  A-CAGCAGACCTGGTTTGAAGGTGTCTTCTTGTCTTCCATGTGCCCCATTAATGTCAGTGCCGGCACCTTTTAT  144

Query  148  GGAATTATGTTTGATGCAGGGAGCACTGGAACTCGAATTCATGTTTACACCTTTGTGCAGAAAATGCCAGGACA  221
            |||||||||||||||||.||.||||||||||||||.||||||||||||||.|||||||||||||...|||||||
Sbjct  145  GGAATTATGTTTGATGCGGGCAGCACTGGAACTCGGATTCATGTTTACACTTTTGTGCAGAAAACAGCAGGACA  218

Query  222  GCTTCCAATTCTAGAAGGGGAAGTTTTTGATTCTGTGAAGCCAGGACTTTCTGCTTTTGTAGATCAACCTAAGC  295
            |||.||..||||.|||||.|||.|||||||||||||||||||.|||||||||||||||||.|||||.||.||.|
Sbjct  219  GCTCCCCTTTCTGGAAGGTGAAATTTTTGATTCTGTGAAGCCGGGACTTTCTGCTTTTGTGGATCAGCCCAAAC  292

Query  296  AGGGTGCTGAGACCGTTCAAGGGCTCTTAGAGGTGGCCAAAGACTCAATCCCCCGAAGTCACTGGAAAAAGACC  369
            |||||||||||||.||.||.|.||||||.|||||||||||||||||.||||||.||||.||||||.|||.||||
Sbjct  293  AGGGTGCTGAGACTGTCCAGGAGCTCTTGGAGGTGGCCAAAGACTCGATCCCCAGAAGCCACTGGGAAAGGACC  366

Query  370  CCAGTGGTCCTAAAGGCAACAGCAGGACTACGCTTACTGCCAGAACACAAAGCCAAGGCTCTGCTCTTTGAGGT  443
            ||.|||||.||.||.|||||.||.|||||.||.||.|||||.||.||.||||||.|||||||||||||.|||||
Sbjct  367  CCGGTGGTTCTGAAAGCAACGGCCGGACTCCGTTTGCTGCCTGAGCAGAAAGCCCAGGCTCTGCTCTTGGAGGT  440

Query  444  AAAGGAGATCTTCAGGAAGTCACCTTTCCTGGTACCAAAGGGCAGTGTTAGCATCATGGATGGATCCGACGAAG  517
            |.||||||||||||.|||.||||||||||||||.|||.|.|||||.|||||||||||||||||.|||.|.||||
Sbjct  441  AGAGGAGATCTTCAAGAATTCACCTTTCCTGGTCCCAGATGGCAGCGTTAGCATCATGGATGGGTCCTATGAAG  514

Query  518  GCATATTAGCTTGGGTTACTGTGAATTTTCTGACAGGTCAGCTGCATGGCCACAGACAGGAGACTGTGGGGACC  591
            |||||.||||.||||||||.|||||.|||||.|||||||||||||||||.|...|.||||||||||||||||||
Sbjct  515  GCATACTAGCCTGGGTTACCGTGAACTTTCTAACAGGTCAGCTGCATGGTCGTGGCCAGGAGACTGTGGGGACC  588

Query  592  TTGGACCTAGGGGGAGCCTCCACCCAAATCACGTTCCTGCCCCAGTTTGAGAAAACTCTGGAACAAACTCCTAG  665
            .|.|||||.|||||.||||||||||||||||||||.||.|||||||||||||||||.|||||||||||.|||||
Sbjct  589  CTTGACCTGGGGGGTGCCTCCACCCAAATCACGTTTCTACCCCAGTTTGAGAAAACCCTGGAACAAACACCTAG  662

Query  666  GGGCTACCTCACTTCCTTTGAGATGTTTAACAGCACTTATAAGCTCTATACACATAGTTACCTGGGATTTGGAT  739
            ||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||.|||||||||||.
Sbjct  663  GGGCTACCTCACTTCCTTTGAGATGTTTAACAGCACTTTTAAGCTCTATACACATAGTTACTTGGGATTTGGAC  736

Query  740  TGAAAGCTGCAAGACTAGCAACCCTGGGAGCCCTGGAGACAGAAGGGACTGATGGGCACACTTTCCGGAGTGCC  813
            ||||||||||||||||.|||||.||||||||||||||..||.|||||||||||||.||.||.||.||.||||||
Sbjct  737  TGAAAGCTGCAAGACTGGCAACTCTGGGAGCCCTGGAAGCAAAAGGGACTGATGGACATACGTTTCGAAGTGCC  810

Query  814  TGTTTACCGAGATGGTTGGAAGCAGAGTGGATCTTTGGGGGTGTGAAATACCAGTATGGTGGCAACCAAGAAGG  887
            ||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||
Sbjct  811  TGTTTACCAAGATGGTTGGAAGCAGAGTGGATCTTTGGGGGTGTGAAATACCAGTATGGTGGTAACCAAGAAGG  884

Query  888  GGAGGTGGGCTTTGAGCCCTGCTATGCCGAAGTGCTGAGGGTGGTACGAGGAAAACTTCACCAGCCAGAGGAGG  961
            ||||.||||||||||.|||||||||||.||||||||||||||.||||..||.|||||||||||||||||.||.|
Sbjct  885  GGAGATGGGCTTTGAACCCTGCTATGCGGAAGTGCTGAGGGTAGTACAGGGGAAACTTCACCAGCCAGAAGAAG  958

Query  962  TCCAGA-GAGGTTCCTTCTATGCTTTCTCTTACTATTATGACCGAGCTGTTGACACAGACATGATTGATTATGA  1034
            ||| || ||.|..|||||||.||||||||||||||.||.||.|||||.|.|||||||.||.||||.||||||||
Sbjct  959  TCC-GAGGAAGCGCCTTCTACGCTTTCTCTTACTACTACGATCGAGCCGCTGACACACACTTGATCGATTATGA  1031

Query 1035  AAAGGGGGGTATTTTAAAAGTTGAAGATTTTGAAAGAAAAGCCAGGGAAGTGTGTGATAACTTGGAAAACTTCA  1108
            ||||||.||..||||||||||||||||||||||||||||||||||.|||||||||||.|||||||..|.||||.
Sbjct 1032  AAAGGGCGGGGTTTTAAAAGTTGAAGATTTTGAAAGAAAAGCCAGAGAAGTGTGTGACAACTTGGGGAGCTTCT  1105

Query 1109  CCTCAGGCAGTCCTTTCCTGTGCATGGATCTCAGCTACATCACAGCCCTGTTAAAGGATGGCTTTGGCTTTGCA  1182
            ||||.||||||||||||||.||||||||.||||..|||||||||||||||||.||.|||||.|||||||||||.
Sbjct 1106  CCTCGGGCAGTCCTTTCCTCTGCATGGACCTCACTTACATCACAGCCCTGTTGAAAGATGGTTTTGGCTTTGCC  1179

Query 1183  GACAGCACAGTCTTACAGCTCACAAAGAAAGTGAACAACATAGAGACGGGCTGGGCCTTGGGGGCCACCTTTCA  1256
            |||.||||..|||||||||||||||||||||||||||||||||||||.||.|||||||||||||||||||||||
Sbjct 1180  GACGGCACCCTCTTACAGCTCACAAAGAAAGTGAACAACATAGAGACTGGTTGGGCCTTGGGGGCCACCTTTCA  1253

Query 1257  CCTGTTGCAGTCTCTGGGCATCTCC--CAT  1284
            ||||.|.|||||||||||||||.||  |  
Sbjct 1254  CCTGCTCCAGTCTCTGGGCATCACCAGC--  1281

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