Nucleotide Global Alignment

Description

Query:
ccsbBroad304_15394
Subject:
NM_177259.4
Aligned Length:
1670
Identities:
1279
Gaps:
268

Alignment

Query    1  ATGTCAACTGAGACAGAACTTCAAGTAGCTGTGAAAACCAGCGCCAAGAAAGACTCCAGAAAGAAAGGTCAGGA  74
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||
Sbjct    1  ATGTCAACTGAGACAGAACTTCAAGTAGCTGTGAAAACCAGCGCCAAGAAAGACTCCAGGAAGAAAGGTCAGGA  74

Query   75  TCGCAGTGAAGCCACTTTGATAAAGAGGTTTAAAGGTGAAGGGGTCCGGTACAAAGCCAAATTGATCGGGATTG  148
            ||||||.|||||||||||||||||||||||||||||.|||||||||||||||||||||||..||||.|||||||
Sbjct   75  TCGCAGCGAAGCCACTTTGATAAAGAGGTTTAAAGGCGAAGGGGTCCGGTACAAAGCCAAGCTGATTGGGATTG  148

Query  149  ATGAAGTTTCCGCAGCTCGGGGAGACATGTTATGTCAAGATTCCATGATGAAACTCAAGGGCGTTGTTGCTGGC  222
            |||||||.|||||||||||||||||||.||||||||||||||||||||||||.||||||||.||||||||||||
Sbjct  149  ATGAAGTGTCCGCAGCTCGGGGAGACAAGTTATGTCAAGATTCCATGATGAAGCTCAAGGGTGTTGTTGCTGGC  222

Query  223  GCTCGTTCCAAAGGAGAACACAAACAGAAAATCTTTTTAACCATCTCCTTTGGAGGAATCAAAATCTTTGATGA  296
            ||.||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  GCACGTTCCAAGGGAGAACACAAACAGAAAATCTTTTTAACCATCTCCTTTGGAGGAATCAAAATCTTTGATGA  296

Query  297  GAAGACAGGGG---TTC----CCACCA-GC----CA--AAA-------------GAAGGA------AGGT----  333
            ||||||.||||   |||    .||||| ||    ||  |||             ||||||      ||.|    
Sbjct  297  GAAGACGGGGGCCCTTCAGCATCACCATGCTGTTCATGAAATTTCCTACATTGCGAAGGACATCACAGATCATC  370

Query  334  --------------GTTT---------------AT----GATGTG-------CCAAAAAG----------TCAA  357
                          ||||               ||    |||.||       |.|||.||          |.||
Sbjct  371  GGGCTTTCGGATACGTTTGCGGGAAGGAAGGGAATCACAGATTTGTGGCCATCAAAACAGCCCAGGCGGCTGAA  444

Query  358  CCTGT-------------------------------------------AAGTAATG------------------  370
            |||||                                           |||.||.|                  
Sbjct  445  CCTGTTATCCTGGACTTGAGAGATCTCTTTCAACTCATCTATGAGCTGAAGCAAAGAGAAGAATTGGAAAAAAA  518

Query  371  ----------------------------GCTAT--------TCGTTT-----GAGGATTTTGAAGAAC------  397
                                        |||.|        .|.|||     ||||||.|.|||||.|      
Sbjct  519  GGCACAAAAGGATAAGCAGTGTGAACAAGCTGTGTACCAGACCATTTTGGAAGAGGATGTGGAAGATCCCGTGT  592

Query  398  ------------GGTTTGCTGC--------AGCCACCCCG---------AACAGAA------------------  424
                        .|||||..||        |||||..|||         |||||||                  
Sbjct  593  ACCAGTACATTGTGTTTGAGGCTGGACATGAGCCAATCCGTGATCCTGAAACAGAAGAGAACATTTACCAGGTT  666

Query  425  ---ACCTGCCCACAGA--------CTTTGATGAGATTTTTG------AGGCAAC---GAAG-GCTGTGACCCAA  477
               |||.|||.|.|||        .||| ||||    |.||      ||.||||   .||| ||||||||||||
Sbjct  667  CCCACCAGCCAAAAGAAGGAAGGTGTTT-ATGA----TGTGCCAAAAAGTCAACCTGTAAGTGCTGTGACCCAA  735

Query  478  TTAGAACTTTTTGGGGACATGTCCACACCCCCTGATATAACCTCTCCTTCCACTCCTGCAACTCCAGGTGATGC  551
            ||||||||||||||.|||||||||||.||.|||||||||||||||||..|.|||||||||||.|||||||||||
Sbjct  736  TTAGAACTTTTTGGAGACATGTCCACCCCTCCTGATATAACCTCTCCCCCTACTCCTGCAACCCCAGGTGATGC  809

Query  552  CTTTATCCCATCTTCATCTCAGACCCTTCCAGCGAGTGCAGATGTGTTTAGTTCTGTACCTTTCGGCACTGCTG  625
            ||||.||||.||.||.||.|||||.|||||.|.||||||||||||||||.|.|||.|..|||||||||||||||
Sbjct  810  CTTTCTCCCGTCGTCGTCCCAGACGCTTCCGGGGAGTGCAGATGTGTTTGGCTCTATGTCTTTCGGCACTGCTG  883

Query  626  CTGTACCCTCAGGTTACGTTGCAATGGGCGCTGTCCTCCCGTCCTTCTGGGGTCAGCAGCCCCTCGTCCAACAG  699
            ||||||||||||||||.||.||.||||||||.||||||||.|||||||||||.|||||||||||.||.||||||
Sbjct  884  CTGTACCCTCAGGTTATGTCGCTATGGGCGCCGTCCTCCCATCCTTCTGGGGCCAGCAGCCCCTTGTTCAACAG  957

Query  700  CAGATGGTCATGGGTGCCCAGCCACCAGTCGCTCAGGTGATGCCGGGGGCTCAGCCCATCGCATGGGGCCAGCC  773
            |||||.|.|||||||||.||||||||.||||||||||||||.||.||.||||||||||||||||||||||||||
Sbjct  958  CAGATCGCCATGGGTGCTCAGCCACCCGTCGCTCAGGTGATACCAGGAGCTCAGCCCATCGCATGGGGCCAGCC  1031

Query  774  GGGTCTCTTTCCTGCCACTCAGCAGCCCTGGCCAACTGTGGCCGGGCAGTTTCCGCCAGCCGCCTTCATGCCCA  847
            .|||||||||||||||||.|||||..|||||||.|||||||||||||||||.||||||||||||||||||||||
Sbjct 1032  AGGTCTCTTTCCTGCCACCCAGCAAGCCTGGCCCACTGTGGCCGGGCAGTTCCCGCCAGCCGCCTTCATGCCCA  1105

Query  848  CACAAACTGTTATGCCTTTGCCAGCTGCCATGTTCCAAGGTCCCCTCACCCCCCTTGCCACCGTCCCAGGCACG  921
            |||||||||||||||||||..||||.||||||||||||||||||||||||||||||||.|||||||||||||||
Sbjct 1106  CACAAACTGTTATGCCTTTAGCAGCCGCCATGTTCCAAGGTCCCCTCACCCCCCTTGCAACCGTCCCAGGCACG  1179

Query  922  AGTGACTCCACCAGGTCAAGTCCACAGACCGACAAGCCCAGGCAGAAAATGGGCAAAGAAACGTTTAAGGATTT  995
            |.||||||..||||||||||||||||||..|||||||||||||||||||||||.||.||..||||.||||||||
Sbjct 1180  AATGACTCTGCCAGGTCAAGTCCACAGAGTGACAAGCCCAGGCAGAAAATGGGGAAGGAGTCGTTCAAGGATTT  1253

Query  996  CCAGATGGCCCAGCCTCCGCCCGTGCCCTCCCGCAAACCCGACCAGCCCTCCCTCACCTGTACCTCAGAGGCCT  1069
            ||||||||.|||||||||.|||||.||||||||.||.||.||||||||||||||.|||||||||||||||||||
Sbjct 1254  CCAGATGGTCCAGCCTCCACCCGTACCCTCCCGGAAGCCTGACCAGCCCTCCCTGACCTGTACCTCAGAGGCCT  1327

Query 1070  TCTCCAGTTACTTCAACAAAGTCGGGGTGGCACAGGATACAGACGACTGTGATGACTTTGACATCTCCCAGTTG  1143
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||..||
Sbjct 1328  TCTCCAGTTACTTCAACAAAGTCGGGGTGGCACAGGATACAGACGACTGTGATGACTTTGACATCTCCCAACTG  1401

Query 1144  AATTTGACCCCTGTGACTTCTACCACACCATCGACCAACTCACCTCCAACCCCAGCCCCTAGACAGAGCTCTCC  1217
            ||.|||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||.|||||||||||
Sbjct 1402  AACTTGACCCCTGTGACTTCTACCACACCATCTACCAACTCACCTCCAACCCCAGCCCCTAGGCAGAGCTCTCC  1475

Query 1218  ATCCAAATCATCTGCATCCCATGCCAGTGATCCTACCACAGATGACATCTTTGAAGAGGGCTTTGAAAGTCCCA  1291
            ||||||||||||.||||||||.|.||||||.||.|||.|||||||||||||.|||||.||||||||||||||||
Sbjct 1476  ATCCAAATCATCAGCATCCCACGTCAGTGACCCGACCGCAGATGACATCTTCGAAGAAGGCTTTGAAAGTCCCA  1549

Query 1292  GCAAAAGCGAAGAGCAAGAAGCTCCTGATGGATCACAGGCCTCATCCAACAGTGATCCATTTGGTGAGCCCAGT  1365
            |||||||.|||||.||||||||.||||||||||||||||||||.||||.|||||||||||||||.|||||||||
Sbjct 1550  GCAAAAGTGAAGAACAAGAAGCACCTGATGGATCACAGGCCTCCTCCACCAGTGATCCATTTGGGGAGCCCAGT  1623

Query 1366  GGGGAGCCCAGTGGTGATAATATAAGTCCACAGGCCGGTAGC  1407
            ||.|||||||||||||||||||||||||||||.|.|||||||
Sbjct 1624  GGTGAGCCCAGTGGTGATAATATAAGTCCACAAGACGGTAGC  1665

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