Nucleotide Global Alignment

Description

Query:
ccsbBroad304_15487
Subject:
NR_003367.3
Aligned Length:
1964
Identities:
159
Gaps:
1785

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CTCCGGGCAGAGCGCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCAGCCTGATCTTTTGGCCAGAA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GGAGATTAAAAAGATGCCCCTCAAGATGGCTGTGCCTGTCAGCTGCATGGAGCTTCGTTCAAGTATTTTCTGAG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CCTGATGGATTTACAGTGATCTTCAGTGGTCTGGGGAATAACGCTGGTGGAACCATGCACTGGAATGACACACG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CCCGGCACATTTCAGGATACTAAAAGTGGTTTTAAGGGAGGCTGTGGCTGAATGCCTCATGGATTCTTACAGCT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  TGGATGTCCATGGGGGACGAAGGACTGCAGCTGGCTGAGAGGGTTGAGATCTCTGTTTACTTAGATCTCTGCCA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  ACTTCCTTTGGGTCTCCCTATGGAATGTAAGACCCCGACTCTTCCTGGTGAAGCATCTGATGCACGTTCCATCC  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GGCGCTCAGCTGGGCTTGAGCTGACCATACTCCCTGGAGCCTTCTCCCGAGGTGCGCGGGTGACCTTGGCACAT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  ACAGCCATCATGATGGTACTTTAAGTGGAGGCTGAATCATCTCCCCTTTGAGCTGCTTGGCACGTGGCTCCCTT  740

Query    1  -------------------------------------------------------------------ATGCAGT  7
                                                                               .|.||||
Sbjct  741  GGTGTTCCCCTTTTACTGCCAGGACACTGAGATTTGGAGAGAGTCTCACTCTGTGGTCCAGGCTGAAGTACAGT  814

Query    8  GGCGCCATCTCAGCTCACTGCAACCTCCATCTCCCAGGTTCAAGCGATTCTCGTGCCTCGGCCTCCTGAGTAGC  81
            |||...|||.|||.|||||||||||.|||.|||||.||||||||.|||.|||.||||||.||||||.|||||||
Sbjct  815  GGCATGATCCCAGGTCACTGCAACCCCCACCTCCCGGGTTCAAGTGATCCTCCTGCCTCAGCCTCCCGAGTAGC  888

Query   82  TGGGATTACAGGCGTGTGCCACTACACTCAA-------CTAATTTTTGTATTTTTAGGAGAGACGGGGTTTCAC  148
            |||.|||||||||||||||||       |||       ||||.||||||||||||||.||||||||||||||||
Sbjct  889  TGGTATTACAGGCGTGTGCCA-------CAAAGCCTGGCTAAGTTTTGTATTTTTAGTAGAGACGGGGTTTCAC  955

Query  149  CCTGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG------------------------------------  186
            |.|||||||||||.||||||||||||||||||||||||                                    
Sbjct  956  CATGTTGGCCAGGTTGGTCTCGAACTCCTGACCTCAAGTGATCCACTCACTTTGGCCTTTCAACGTGCTGGGAT  1029

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1030  TACAGGCGAGAGTCACCGCACCCGGACGACTCTGACATTTTTGAAGAGTCCAGAATCCTGTTACACCTGGGATT  1103

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1104  TAGGCACTTTCAATCTGAAAAAATACATATCCTTTCAGCACTCTGGACGGACTTGAGAACTGTCCTTACGTGAC  1177

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1178  CTAAAGCTGGAGTATTTTGAGATTGGAGAATTAAGAGCCAGTCTTGGTGCTCTGTGTTCACCTGGTTCATCTGA  1251

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1252  GGAGCTGCATCTACCCTGCCCATGCCATAGATCCTGCCCTGTTTGCTTCTCCTGTTGCTGCTAGTGGACATGAG  1325

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1326  AAGGACAGAATAACGGGCTCCCAGATTCACAAGCCCCACCAAGAGGATCACCCCAGGAACGCTTGGAGGCTGAG  1399

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1400  GAGTTCACTGAGGCTACTGCATCTTGAGACTCAGGATGAAGACCCAGCTTGGGGCTGTCAAAGAGGCCTGAAGA  1473

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1474  GGCAGAACACCCCAGAGGAGCCTGGGGCCACCACCCAGCATCACTGTGGGAAAACGGCAGCAGGAAATGTCCTC  1547

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1548  TCGCCTGCGTGCTCCACCTCGGTCCACGCCTTCCCTCCTTCTGGAAGCCTTGCCTGACCACTGGCCTGCCCCTT  1621

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1622  CTATGGGAATCACTACTGACCTTGCAGCTTATTATAGACTTATATGTTTTTTGCATGTCTGACACCCATGACTC  1695

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1696  CACCTGGACCTTATGGCTCCACCCAGAAGCAATTCAGCCCAACAGGAGGACAGCTTCAACCCATTACGATTTCA  1769

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1770  TCTCTGCCCCAACCACTCAGCAGCAAGCACCTGTTACCTGTCCACCCCCACCCCTTCCCCCAAACTGCCTTTGA  1843

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1844  AAAATCCCTAACCTATGAGCTTTGAATAAGATGAGTACGAACTTCATCGCCCACGTGGCGTGGCCGGCCTCGTG  1917

Query  187  ----------------------------------------  186
                                                    
Sbjct 1918  TCTATTAAATTCTTTTTCTACTAAAAAAAAAAAAAAAAAA  1957

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.