Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_15487
- Subject:
- NR_028077.2
- Aligned Length:
- 4323
- Identities:
- 160
- Gaps:
- 4137
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACTTTTGATGGGTTCCGGGTCCCAAAAGGGTTCGAGGCCTCTTGCCTTCGCTCCGTAGGAGGGAGTTCTCTTCT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGCCCTGGGGGCCGCAGGACTGTCCAGGAATACAGTTTCCAGGTGAGATCTTACTTGAAACACCGGTAGTTCTA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GCACAGCTAAAATGGCATCTACTTGGGCTATCCAGGCCCACATGGACCAGGATGAACCTTTGGAAGTAAAGATA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GAGGAAGAGAAATATACCACCAGACAGGATTGGGACCTGCGTAAAAACAACACCCATAGCAGAGAGGTCTTCCG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TCAGTACTTCAGACAGTTCTGCTACCAGGAGACATCTGGTCCCCGTGAGGCTTTGAGCCGACTCCGAGAACTTT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GCCATCAGTGGCTGAGGCCAGAGACCCACACCAAAGAACAGATTCTGGAGCTGCTGGTGCTGGAGCAGTTCCTG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 ACCATCCTACCTGAGGAGCTCCAGGCCTGGGTGCAGGAGCAGCATCCAGAGAGTGGGGAGGAGGTGGTGACTGT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GCTGGAGGATTTAGAGAGAGAACTGGATGAACCAGGAGAGCAGGTCTCAGTCCACACTGGGGAACAGGAAATGT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TCTTGCAGGAGACGGTACGTCTACGAAAAGAAGGAGAACCCAGTATGTCCCTCCAGTCCATGAAAGCCCAGCCA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 AAGTATGAATCTCCAGAACTTGAATCCCAACAGGAGCAAGTTTTAGATGTTGAGACTGGAAATGAGTATGGGAA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TTTAAAGCAAGAAGTTTCTGAAGAAATGGAACCACATGGGAAGACATCCAGTAAATTTGAAAATGATATGTCCA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AGTCTGCTAGGTGTGGAGAAACTCGTGAACCTGAAGAAATAACAGAAGAGCCCTCTGCTTGCTCCAGAGAAGAT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AAACAACCTACCTGTGATGAAAATGGAGTAAGCCTGACTGAGAACTCTGACCATACTGAACATCAGAGAATCTG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TCCAGGAGAAGAATCTTACGGATGTGATGACTGTGGAAAAGCTTTTAGTCAGCACTCACACCTCATAGAACATC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 AGAGGATCCATACTGGAGATAGACCCTACAAATGCGAAGAATGTGGAAAAGCTTTCCGTGGGAGAACTGTGCTT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 ATTCGACACAAAATAATACACACTGGAGAGAAACCGTATAAGTGTAATGAATGTGGCAAAGCCTTTGGCCGGTG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 GTCAGCTCTTAACCAACATCAGAGACTTCACACAGGAGAAAAACACTATCACTGTAATGACTGTGGCAAAGCCT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TTAGTCAGAAAGCAGGCCTCTTTCACCATATCAAGATCCACACAAGAGACAAACCTTATCAGTGCACTCAGTGT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 AATAAAAGTTTTAGTCGGCGTTCCATACTTACTCAGCATCAAGGAGTTCATACCGGCGCCAAGCCGTATGAGTG 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CAACGAGTGTGGAAAAGCCTTTGTTTATAACTCATCCCTTGTTTCCCATCAGGAAATCCACCACAAAGAAAAAT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GCTATCAGTGTAAGGAATGTGGGAAATCCTTCAGTCAGAGTGGCCTTATTCAGCATCAGAGAATTCACACTGGG 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GAAAAACCCTACAAATGTGACGTATGTGAAAAAGCCTTTATTCAAAGGACAAGTCTTACAGAACATCAGCGAAT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TCACACTGGAGAAAGACCCTATAAATGTGATAAGTGTGGGAAGGCGTTTACTCAAAGATCAGTCCTCACGGAAC 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 ATCAGAGAATCCACACTGGAGAGAGGCCCTACAAGTGTGATGAGTGTGGGAATGCCTTCCGAGGAATCACCAGC 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 CTCATTCAGCATCAGAGAATCCACACTGGGGAGAAGCCCTACCAATGTGATGAGTGTGGAAAAGCCTTCAGACA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 GAGGAAGAAGACCAGCTACAAGGAAATACTTCTGAAAAATCACTCTGAACCCCAAGCTGGAGTGAATCTTCTCC 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TGAGCTCTCTCATTCCAGAATGGCAATCTTGTTTCAGGAGAGATCTCTAATAGTGACTGATGGTAAAGGAAGAA 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 GGCTGTGCCTAGAACAAAGAATCAGGCTGGCAAAGAAATCACAGGTCTTTCCTCAAACTTTAAATTGCTACTCT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 CTGGAGATAGCTACCTGGACTTTACAGAGCTGTCAGAAGACTTGGGAAGGTTTGCCAGCATTGGAAAAAGCCAC 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 TTGGACTTCACAGAGCTGTCAGAAGACTTAGGAAGCTTTGCCAGTAGTTCCTGAGACCAGAAATACATATTATG 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 AAGCAGGTGCTGGAACAGGCCCTGGCCCCTACTTGTGAAGCTGCAGATATAGATGGTGTTACTGAGAAGGAAAC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 TAAGGACTTGGCTCCAAAACAAAACAAAACAAAATCTGGAGATGCTGAATTTTGTTGGGGGGAATGTCTGTAGA 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 ACTGCAACATCAATGCAGTAAGTGTAGTAAAAGCTTTAGTTTATGGTGAGTCATTACTCAGCATCATGGAGTCC 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 ACGATGAAGAGAATCTCTTTTCAATCTGTGCAATCAACAAGTTTTTGAAAGGCTTTTGTTTATAGTGGAACCCT 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 CTTTTCCCCCTAGAAGAACCACCACAAGGAAAAATGCTGTCACCATAAGGAATGTGGGAAAGTTTTCAGCCACA 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 TGGCCTTATTTGACTTCAAAGAATCCACATGAGAGAGAGACTGCATAAATGTAATAACTGAGGAGGCCTTTGTT 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 CAGCAAAGAAACCTTATACAAACTCGTATAAAGAATGTAGGAAGACCTTCACCCAGAAGCCAGGACTGACTGTG 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 CACCAGAGAATCTGCACAATAAACATGATGAATGTGGAGATGCTTGCTTCAGCATTGGAGAATTCACAGTAAAG 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 GGAAACCCTGCCAGTGTGATGAGTACGGAAAAGTCTTCAGAGGTTGGAACTTGGGAAAAATCAGTGAGTGAATT 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 CATATTAGAGAGGCTCTTATAAATGAGAGGATTGTGGAAACTTGTATAGACAGAGATCAGACCTCAACAAGGGA 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 GCCTCCACAGTATTGAAAAGTTAATATAATTAATGTAAGTGGGCAAGTTGTATGGGGAATGGGTAGTCTAAATT 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 GCTCATTTTAGCCAGTAAAAACATTAAATTAGTTTCTTAGATCAAGAAAAGGAAATGTTAGAAGTTATTTTTCC 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 CTTCCAGAGGGGTCTATATGTGTAAGCAACCAGGACTTTTGAAATAAGTTGCATCTCTGGATTTGTGATCTGTC 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 TCCTGGATGATTATCTCTGTTTTGGGAGACAGGTATTTTTTCTTCATGCCTGCTCTAGTCTCATCTCATATCTT 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 TAATTCATTCAGCAAGTATACACAATAGTATTATCGTCTACTGTTTGTTGTAAATATATATATATTATTTTCTT 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 TTTGGTCTGAGTAGGCTTGTATTGGTACCCTAGGACATAAAAATCACATATATCATGTTTCAGTAAATGCAGTG 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 AAAGGAACTATATTATTAAATTGCTGGGAATTTCTGTAAATTTGAGACTACCTTTATATTCTCCAACACAAGAC 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 CGTGTAGGTGTCCCTTCAGAGAGTATATTTTTCTAGCTTGGCTTCTTTATTTTCTTTATTTTTTTGAGATGGAG 3552
Query 1 -------------------------ATGCAGTGGCGCCATCTCAGCTCACTGCAACCTCCATCTCCCAGGTTCA 49
.||||.||||.|.|||||.||||||||||||||||..||||||||||||
Sbjct 3553 TCTTGCTCCTGTCGCCCAGGCTGGAGTGCAATGGCACGATCTCGGCTCACTGCAACCTCCGCCTCCCAGGTTCA 3626
Query 50 AGCGATTCTCGTGCCTCGGCCTCCTGAGTAGCTGGGATTACAGGCGTGTGCCACTACACTCAACTAATTTTTGT 123
||.|||||||.||.|||.|.||||.||||||||||||||||||||...||||||.|..|.||.|||||||||||
Sbjct 3627 AGTGATTCTCCTGTCTCAGTCTCCCGAGTAGCTGGGATTACAGGCACTTGCCACCATTCCCAGCTAATTTTTGT 3700
Query 124 ATTTTTAGGAGAGACGGGGTTTCACCCTGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG----------- 186
||||||||.|||||||||||||||||.||||||||||||||||||||||||||||||||...|
Sbjct 3701 ATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTTGTGATCTGCCCACC 3774
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3775 TTGGCCTCCCAAAGTTCAGGGATTACAGGCATGAGCCACCATGCCCGGCTGTTTTTTTAAGATAGAAAAATATA 3848
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3849 CTTCATGTATAGCCTATTGACAGATAATGACTGATATTTTTTCTTATAGATAACACATAATAAACATTGTGAAG 3922
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3923 ACTAATAAGTAACTTGCTTATTCTTTTCAGTTCTAAAACCTGTAGGAAAGAATCTTTAGAAGCTGTCAACAAGT 3996
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3997 TGATAATGTAGCCCAATCTCTACCCATGATAGGAGAGTAAGGCTTATATATTTTATAGTAGGGCACTAAATACA 4070
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4071 GGAACCATGTATTTAAAAACTTTTTAGTGATTATCTCAGAATTCTAGGTGTCCCTCTGCTGTACATCCCTAAAT 4144
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4145 TTTTTGCATAGGTATTATTAATAAATTCATTATTTTCAAAGATGGACTGTGTTCTGTAAAAAGCTTTTCCAGTA 4218
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4219 TCTGCAAATCACACAGTTTTTTTTAACTCTATTACTATTATATAAAATGATTTCTTAATATTGAACCAACCTTG 4292
Query 187 ------------------------------- 186
Sbjct 4293 CATTCCTAGAATAAACCTCACTTAGCCATGA 4323
