Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_15487
- Subject:
- NR_033181.2
- Aligned Length:
- 6115
- Identities:
- 162
- Gaps:
- 5929
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTTCCTCCGACTTCCGGACATCTCCCTGGGAGTCGCGCAGAGTGGAGTCAAAGGCAACCAGTGCTCGCTGCGGT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CTCTGGGGATCGGGACCGCGGCGGCGGCCCGCGAGCGGGATGTTCCGGGGCTTGAGCAGTTGGTTGGGCTTGCA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GCAGCCGGTGGCAGGCGGTGGGCAGCCCAATGGAGATGCTCCACCCGAGCAGCCGTCCGAGACGGTGGCTGAGT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CTGCGGAGGAGGAGCTGCAGCAAGCGGGAGACCAGGAGCTCCTCCACCAGGCCAAAGACTTCGGCAATAACTGA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 ATCAGTTGCTGAAACAGCACAAACAATAAAGAAATCCGTAGAAGAAGGAAAAATAGATGGCATCATTGACAAGA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CAATTATAGGAGATTTTCAGAAGGAACAGAAAAAATTTGTTGAAGAGCAACATACAAAGAAGTCAGAAGCAGCT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GTGCCCCCATGGGTTGACACTAACGATGAAGAAACAATTCAACAACAAATTTTGGCCTTATCAGCTGACAAGAG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GAATTTCCTTCGTGACCCTCCGGCTGGCGTGCAATTTAATTTCGACTTTGATCAGATGTACCCCGTGGCCCTGG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TCATGCTCCAGGAGGATGAGCTGCTAAGCAAGATGAGATTTGCCCTCGTTCCTAAACTTGTGAAGGAAGAAGTG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TTCTGGAGGAACTACTTTTACCGCGTCTCCCTGATTAAGCAGTCAGCCCAGCTCACGGCCCTGGCTGCCCAACA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GCAGGCCGCAGGGAAGGAGGAGAAGAGCAATGGCAGAGAGCAAGATTTGCCGCTGGCAGAGGCAGTACGGCCCA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AAACGCCACCCGTTGTAATCAAATCTCAGCTTAAAACTCAAGAGGATGAGGAAGAAATTTCTACTAGCCCAGGT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GTTTCTGAGTTTGTCAGTGATGCCTTCGATGCCTGTAACCTAAATCAGGAAGATCTAAGGAAAGAAATGGAGCA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 ACTAGTGCTTGACAAAAAGCAAGAGGAGACAGCCGTACTGGAAGAGGATTCTGCAGATTGGGAAAAAGAACTGC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 AGCAGGAACTTCAAGAATATGAAGTGGTGACAGAATCTGAAAAACGAGATGAAAACTGGGATAAGGAAATAGAG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 AAAATGCTTCAAGAGGAAAATTAGCTGTTCCTGAAATAGAAGAATAATCCTTAACAGTCTGCAAACTGACATTA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 AATTCTAGATGTTGACAATTACTGAATCAGAAGGCATGAAAGAGTATAATTTTATGAAATTCAAAATTATTCTT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TTTTCAAGTTGAAACTTGCCTCTTCTACTTTAAAAAAGTATATAGAACAGTTACTTCTAATAATCAGAAAGAGA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TGTTTTATAGAACATTTCTTTAATATAAAGTTAGAGATGTCTTCATAGGCAGTATGGCTATCTTTGCCACAGAA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 ACATAAGTAAAATTTTAGAGTTCTGTTTTCCATGAGGTCAAAAATATAATTTATTCCTCAGTCATGGTTTTCTA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 AATATCTGTACTCCACATTCCATTTTAATTGATATGAGGGTGTTAAAGTACCTACTTAATGGGTTGATTACTAT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 CAAAATGACCAAATTATACCAAAGAACTTAAGAGGAAGCACTTTCAGAACTATTCACTTGCCAGGTATTTTCTA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 AAATTCCACCTGAAAGCCAAAAGATAAAATAAATAAGTTGATTTTAATGATATAAGCATCACACAATTTTACAT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 TAAGAAATACTGTGCAGGCCATGCGTGGTGGCTCAGGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 GATCACCGGAGGTCAGGAGTTCGAGACCAGCCTTGCCAACATAGTGAAACCCTGTCTCTACTAAAAATACAAAA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 ATTAGCCGGGCATGGTGGCAGGCACCTGTAATCCCAGCTACTAGGGAGGCTTTTGAACCCAGGAGGCAGAGGTT 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 GCAGCGAGCTGAGATCGCGCCACTGCACTCCAGCCTGGGTGATAGAGTGAGATTCAGTCTCAAAAAAAAAAAAA 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 AAAAAAAGCTGTGCGAAAATATTTGTTTTTCTCTGGGGCCTTTTCTTTCTTTTCTTTTTAAACTATACCAGAAA 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 TTTTACATCACAGTTTTTATACAAAGTGGGACCTTCCATACTTTTTGTATTACAATAACCTTCAGAAGCCCATT 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 CCCCTTAAAGTCTGTTGTTCTTGTTTTAATCATCACCACATATAAATGTTTTAGCTTTGTCTTAAACTGTGAGT 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 CTTCATAAAATTGTGTTCCTCCGAGTTCACCTTCTAGGACTTTATTGATTAATCCTTCTCTTTCTGCTATACCA 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 GCAGACACATATTCATAGAATATGATTATTTTTAAAGAACAAGGTGAGGAGGCTGAGGCAGGAGAATTGCTTGA 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 ACCTGGGAGATGGAGGTTGCAGTGAGCTGAGATCACGCCACTGCACTCCAGCCTGGGTGACAGAGTGAGAGACT 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 CCGTCTCAAAAATGAATGAATGAATGAATGAATGAATGAACGAACGAACAAGGTGGTTTAATGTCAGAAAACTT 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 CCTAAGCATTTGCTCCCCAAACCTTTCATGTTTTTCAAGAAGCCTTTATTACATAAAGGGGAATAGAATTAAAA 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 TGTTTCTTTATAAGAAAAATATACATATTTGTGTTCTTGGCCCCATTAAAACTAGTCAGTAGTCCTTTGGCAAA 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 GATATAGTCAACAAGAGAACTGGGTATGAGTCCAGGCATTACTCCTGTTCATAGTTGTGGATGCATGTGTCTGA 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 GCCAGACTGTCTCAACTGGAGTCTCTTGGGTTATAGCAGTAAACCCGTGTATTCCATGAAACCACTGGGCCCAT 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 CATCAAAAGGTTTCCACTTGTGGTGCCACAGTTGCTTATTACTGAGTTTGGGTTCCAAGATGACTGGCAACTTC 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 TGAAATAATCTCATTGAAGGAAAGAGTTTCATTTTTTTTTTAAAAGAGTTTGCTGGAGGAAAAGAAGCATGTTA 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 AATGTTTTTAAGCAGCTAAAAGTCCTAGATGGAAGCATATCAGGATGTGTCGGTGCTTGGCTCTTAGTGAATGC 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 ACTAAAATTCTTATTGATAAATGTTGAATAAACACACACAAAAAAGTATCAGAGAAAGAGAAAAACCCTACAAT 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 GGCAATAGAGGTGTGTGACAGTTATTGCTATCAATTTTACATAATATCTCATTTAAAAACAACCTAATTATGCA 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 TTGCCTGTGAAAATAAAAGGATAAAATAAGATTTTGTACATACTGTAAGAATACAGTTGTGCTGTATTTTTATG 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 GATTCATCAAGGAGTAAAATGTTCTGCTTTAGTAAATTATATAGGTAACTGAAGTGTTATTCCTTTAAAGAGCA 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 AAATAATTTATCACCATGTTTGGTGGAAAATTTCTAAGTATTTATTACATGCCTAGGGGTTAGCCAACAAGATA 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 TACCAAGCATGAAAACCTGTAAAACTTAATAAAATGCTAAAATATGAACATCACACTATGGAGATTATGCCTCA 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 CTACTCAAAGAGTGTGGCTCAGGAACCAGTGTAGCTTGGCCATGCCCTGGCAGTATGTTGGAAATGCCTGCCCC 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 AGACCAGTTGATGTTACTAAGAACGCCCAGGGGATGAGAATGGACTTTATTTACAGTTTGGGAAGCACTGGTCT 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 AATATGCTCTCAGGGAAGCTGAGGTTTCTACTGCTTTTTACTTTTTACCCTTCCACTAGATGTCCTTTGCAGCA 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 GTGTTTTTCTAGTTGGCATTACAGGTGTCTCCTCTGAGGTTCCAGTTATTTCTATACTACCAAAATTAAAAAGA 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 CCCAAGGGCTGGGCATGGTGGTTCACACCTGTAATCCCAGCACTTTGGGAGGCTGAGGCAGGCAGATTGCTTGA 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 GCTCAGGAGTTCAAGACCAGCCTGGGCAACATAGGGAGACCCCTGCCTCTACAAAAATACAAATGAGCCAGGTG 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 TGGTAGCCCACACCTGTGGTCCTAGCTACTTGGAAGGCTGAGGCAGGAGGATCGCTTGAGCCCAGGAGATCCAG 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 GCTGCAGTAAGCCATGATCATGCCACTGCACTTCAGCCTGGGTGACAGAGACTCTGTTTCAAAAAAGGGAGGGG 4070
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4071 GGGCAAGTTTTTAGGGGGATGAGAAATATTCTTGGTAAATCGGGCATTTCTTTTTTTGTTTGTTTTTTTTTCTT 4144
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4145 GGAGACAGAATCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGCTTGATCTCAGCTCACGGCAACCTCCGCCTC 4218
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4219 CCAAGTTCAAGCGATTCTCCCACCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAACCGCCACCATGCCCAGCT 4292
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4293 AATTTTTTTGTATTTTTAGCAGAGATGGGGTTTCACCGTGTTGGCCAGGCTGGTCTCAAGCTCCTGATCTCAAA 4366
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4367 TGATCCGCACGCCTTGACCTCCCAAAGTGTTGGGATTACAGGCATGAGCCACAGCCTTAATTGGTAATTTTTGA 4440
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4441 AAAAAAAACTAGAGAAACATTGTTTCAGAGATAAAGCAGCAATTACACTTGTACTCCCAGTGATTTAAGATGCA 4514
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4515 CTATTGTAATCAAGATGATTTGCTTTAATCAAAATATTGTTAAAAATAGGATTTCAGGACATTTAAAAGGTTTC 4588
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4589 AGCAGAAATCTTATGATTATGTCTGACTTGCAGTATTTTATTTGCCTCTTTGACGGCTTTTTTTTTTTTTTTTT 4662
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4663 TTTTGAGACAGAGTCTCACACTGTTGCCTGGGCTGGAATGCAATGGCGCAGTCTCAGCTCACTGCAAACCTCCG 4736
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4737 GCTCCCGGGTTCAGGCAGTTCTCCTGCCTCAGCCTCCCTAGTAGCTGGGATTATAGGCATGTGCCACCACACCC 4810
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4811 GGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCGCCATGTTGGTCAGGCTGGTCTTGAACTCCCAACCTCA 4884
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4885 GGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCGCCCAACCTTAATGGCT 4958
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4959 TTTTGGTATTAAAAACCAGGACTCTGAATGTGCATCAATAATTCAAATAATTTTATATAGTTACTCTTTCTAGT 5032
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5033 AATAGATACCCCCCTCCATTTTTAAGTAAAGATAAACATTTTTTAATTAGGAAAATTAGGCACATTTAATTTTA 5106
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5107 GCAAATTTAGTTTTTCAACTTTTTTTTTTTTCTTTTTTTTTTTTTTTGAGATGGAGGCTCACTCTGTTGCCCTG 5180
Query 1 ------ATGCAGTGG-CGCCATCTCAGCTCACTGCAACCTCCATCTCCCAGGTTCAAGCGATTCTCGTGCCTCG 67
.|||||||| |||.|.|||.||||||||||||||||..||||..||||||||.|||||||.||||||.
Sbjct 5181 GCTGGAGTGCAGTGGCCGCAACCTCGGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGTGATTCTCCTGCCTCA 5254
Query 68 GCCTCCTGAGTAGCTGGGATTACAGGCGTGTGCCACTACACTCAACTAATTTTTGTATTTTTAGGAGAGACGGG 141
||||||.|||||||||||||||||||||||||||||.||||....|||||||||||||||||||.|||||||||
Sbjct 5255 GCCTCCCGAGTAGCTGGGATTACAGGCGTGTGCCACCACACCTGGCTAATTTTTGTATTTTTAGTAGAGACGGG 5328
Query 142 GTTTCACCCTGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG----------------------------- 186
||||||||.||||||||||||||||||.||||..|||.|||||.|
Sbjct 5329 GTTTCACCATGTTGGCCAGGCTGGTCTTGAACGACTGGCCTCAGGTGATCCGCCCACCTCGGCCTCTCAAAGTG 5402
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5403 CTGGGATTACAGGCATGAGCCACCATGCCCAGCCAGTTTTTCAACTTTTAAAAATAAAAGTGGTAGAATTTTTT 5476
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5477 TTTTTCTTTTTGAGACAGGGTCTTGCTCTGTCACTCAGGCTAGAGTGCAGTGGTGGGATCTCAGCTCACTGCAG 5550
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5551 CCTCCGCCTCCCAGGCTTAAGGGATCCTCCCTCCTCAGCCTCCCGAGTAGCTGGGACCACAGGCATGCACCACC 5624
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5625 ACGCCTGGCTAATTTTTGTATTTTTTGTAGAGATGGGTGTCTCCCCATGTTGCTCAGGCTGTTCTTGAACTTCT 5698
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5699 GAGCTCAGGTGATCTATCTGCCTCGGCCTTCCAAAGTGCTGGGATTACAGGCATGATGAGCCACTGCACCTGGC 5772
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5773 CAAAAGTGGCAGAAATTTTGATATGGTTTATAATCAGTTTTATTGTGGGGAAGATGGGCCATTTTAATGAATGA 5846
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5847 TTATTTCTATTGGCTAAACTACCGAGTCACGACATGACAAATACACATGAAGCTTTAATCACATGCAGTTATAT 5920
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5921 ACTTCTCACAAATCATCAAATTATTTATCTGGTCTTCACACTAAGGGATTTACTTAGATAAGCCATCGATGATT 5994
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5995 TCAGTTGTTAAAAGTGTGGCTTTTTAAACAGCATTTATTCAGTGCATCCTGATTTATTTCAAAATGAAAAATTG 6068
Query 187 ----------------------------------------------- 186
Sbjct 6069 TTACCTTTTTTTCTGAATAAATAAAGCTTACTTTTAGTGGCAAGGTA 6115
