Nucleotide Global Alignment

Description

Query:
ccsbBroad304_15487
Subject:
NR_033709.1
Aligned Length:
4690
Identities:
164
Gaps:
4504

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GTTGTTGCGGGATCTCACAGGCTTTAAACCGCGGCGCCGCGGCGCCCGGGTGTGGATCCCTAGATGGGAGCCGG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GGATGGGCCGGGTGCCTGGTGGGTGGCAGTCGGGGCTGACGGCGGCGGCACTTTGCCGCCTCAGGCCCTGGACA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CCTTCACCCCGCCGCCTGCCCAGGCGGGCCGGCCCTGCCCGTCCACCGGCCGCCGAGAGTCCCCGGCCTTGGGT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CCCCGGGGCCGCTGACTGGCCTCGGTCACCTCCCGGGGAAGGCTCCCGCGCCTCCATCTGCCCCCGCAGGAAGG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GACCCTCTTCTCGCCCGCGAGGCTTCTCCGGGTGGGATCGTCCTGGCCCCCAGCCCTAAGGGATCCGCCCCCTC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CGAGCATCCGCCGCCCCTCGGAGACCACTCCAGCTCGGACGGACCCACTCCAGCCCCCGCTGCACGCGGAAGCG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CTCATCCTCCCCGCCTGCCCCGTTCCCTCCCCCTTCTCCTGTGGGACAACCAGGGACCGCAGCTCCCCGCTCCC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CAGGTGTGGGGGCTCCGACACGAACGCCTCTGCTCGCAGGGCGGTGAGCGCAGATCCCACGGGTCCCTCGGTCG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GGGGTCGAGGCTGCTTCCGTTTCCATCCCGGACCCGACAATGGGCGGGAAAAAGAAGGCTTTACACGACTACGC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GGCGGAGTTCACCGACCTGGTGGTGAAGCACCTGATTGAGCACAGTGACTCTGGGGACACGTCTGTGGTGGAGA  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CCCTTTACTGCAGGGCCTGCGAGCTGCCCGTGCGCGTGCGGAGGGACCGCATCCTGGAACACCTGTCCTCGGGC  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  AGGCAGCACGGCCTGCGGACGCCCATTCTCATGTAAATGTCAGTGCCAACGCTGGTGTTTCAGGAGTCATCCCA  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  GCGGGCTGCGGGCTATTTTAGGATTCTCTGCCCTGCAAACGTTTCCAAAGTACGTGGACAGGCCGCCTGATGAC  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  ACTACGTTTACGGGATCTGCTAGTGGCTTGCCTACTTAGGGAGTAAACCCTGTGAAGTCTCGCAGTTTTGTTAA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  AGTGTGCGTGGCCACCTGAATGCTGCCTTATCACAAGCCAGATACATACTGGTCTGTAGGGTAACTCCCCACTG  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  TTGATCCTCTGAGATGATTGTGGACTGGGTGCTGTGAGTCCTGCCACTTTGTTTAAGTGAATGTGTCTTTTGTC  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  CAGCTCAGCCGCCTCGGATCTCGCTGCCACCAGCCTTACTGCACACCCGTGCCACCCGCCCTTGCCCCGTCAGC  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  CTCAGCCTCAGCTCATTCTCTCAGGCAGTCCCAGCATTGGCACGGTACCTCCTCCCGCTGTGGGCCACACGTCT  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  CTGCTCCCTGTCAACCCTCCTGCCATCAGCACCACCACCAGCGACTTGTCTGCCCGGGAGGATGCAACACCATC  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  TGCCTCCACCGGCCACCTTTCAGTGTTTCCTGCTTTCCAAGTAAAGATACCAGCAGTGCCCTCAGAGCAGACCA  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  GCCAGAGTTTTTCTGAAGCCTCCCACAGGGTGCTCCCCGGAGGAGGCCCGAGATGCTCTCGTGACTTTGGAGCC  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  GGGGTGGCTGGCCACCTTGGCCTGGGCATCTTTGGGGTGGGCTTCGGGAGCCCGGCACTGCTGCAGAGTGTGGT  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  GGATGAGAACAGCTGCTGCTTGCTGTACGTGGTGGAGGACCAGCTGTGTGATGTGGAGCAAGCCTTCAGAGCTG  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  AGCATTTGGGCCAACACCAGAGTGGTTCGGGAACAGGATGCAGACATTGTCCTCAACGACCAGCGGCACTTTGA  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  TCCGGTTTTCCAGTTCTTGCACAAGCAAGTTTGTGTCAGCCACGCCCTGGGGAGGATCCACTGGATCACCGCCG  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  TCACTGCCTGTTCCCGGCGGCCTCTCCGGCTTCCCTAAAGAGAGCAGGTGGGACTTTCTACAACGCTGCTGTGC  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  ACGACGTGGATGCCGTATGCATGTTGCTGGGGGAAGCCACTCCGGACACTGTGTTTTCTCTGGGACATGTCTTC  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  TGCCCAGATATGGCCGCCTTAAAAGATGCAGATGCTGTTGTGATCAGCATGAAGTTTCCCTGTGAGGCCGTGGT  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  TAGCGTGGACATCAGCCAGCACTGCACAGACAGCTGCGACCAGGACGTCAGCCAGCACTGCACAGACAGCTGCG  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  ACCAGAGACTGGAGGGAAATAACCTCCTGAAATCACCAAAGAGCAGTTCCTCAGGGCCTTCCGGGTGACCGTGG  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  CCGTGGAGCAGTCGTGGTGAAACCGGTCAGCTGTGGACCTGCCCTGCGAATCGGCAGAGGCCTCCGTGGTGAAG  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  ACAGAAGCTCCGTGAACCAACTCGAGGCTGGAGCCAAGATCCTGCCTGATATCCAGTTGCCTGTTTCACTTGTT  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  ACTGTTACTGGGAGAGGGAGACAAAACCTCATGGCAATCTTGTCCTCACTGGAGACTCAGAAGGGGAAGCATTG  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  GGAAACCATGTATGTTTCATTTCTGGTTTAACCAGGCTTTTCAGGATGGGACTTCAGACCAAGGACACAAGTTG  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  GGCTTGCTTAGGTGTTTTGTGTTGTGCGCAGGCCTCAGAGATGCTCTTCCGGTCAGAGTTCCCTTGGCAGGGCC  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  TTGGAGGCCTCTGGTTGGCTCTCTCAGGAAGAGGGCAGGTCAGGGATTGGGCGGTGTAAATTGACTCAGAAACC  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  TGCGGTTTCAGCTTTTCTGTGGCAAACAGGGCCGAGGGCTGGTGAAGCTGTTAAGGCTAAATGTCGCATGCATG  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  AGGCGGGCTGCAGGCCTCCTTAGGCCTTTTTTGGGGTAATTACACCAGTATTTAAAAACATTTTTTTTTGTTTG  2812

Query    1  -------------------------------------ATGCAGTGGCGCCATCTCAGCTCACTGCAACCTCCAT  37
                                                 .||||.|||.||.|||||.||||||||||||||||.|
Sbjct 2813  TTTTGAGATGGAGTCTTGCCCTGTCACCCAGGCTGGAGTGCAATGGTGCGATCTCGGCTCACTGCAACCTCCGT  2886

Query   38  CTCCCAGGTTCAAGCGATTCTCGTGCCTCGGCCTCCTGAGTAGCTGGGATTACAGGCGTGTGCCACTACACTCA  111
            |||||||||||||||||||||..||||||.||||.|||||||||||||||||||.|||||||||||.||.|||.
Sbjct 2887  CTCCCAGGTTCAAGCGATTCTTCTGCCTCAGCCTTCTGAGTAGCTGGGATTACACGCGTGTGCCACCACGCTCG  2960

Query  112  ACTAATTTTTGTATTTTTAGGAGAGACGGGGTTTCACCCTGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAA  185
            .|||||||||||||||||||.|||||.|||.|||||||.||||||||||||||||||||||||.||||||||..
Sbjct 2961  GCTAATTTTTGTATTTTTAGTAGAGATGGGATTTCACCATGTTGGCCAGGCTGGTCTCGAACTACTGACCTCGT  3034

Query  186  G-------------------------------------------------------------------------  186
            |                                                                         
Sbjct 3035  GATCCACCTGCCATGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCATGCTCGGCCTAAAAAACAATT  3108

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3109  TTCTTGAAGAATCCGATTTTGTGCATAGTAATGACACAGCACCATTCCTGAGAAATAGGAAATATATGTGTGTG  3182

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3183  GTATGAAAAGCCCATATTCTGTTCTTGTCACCTGAATCTAGGCTTCCTCTTTGGATGTGAACGCGGGAATGAAC  3256

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3257  AGTGGCTGTTTTCCACCCAAAGGGGCGTGGAGACCTTTTGGAAACGGGCTTTCTCCTTTCCATTTTGCAGCCGG  3330

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3331  GGGCGGGTGGAAACCTTCCTTCGAAGGGTAGTGCCTTGGGGAGCAGCAGACCTGCTCTGAGTCCAGCTTAGCTT  3404

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3405  TCCAAAATTCTGTGTGGAACTTACTGGAGATGTTTTTATATATTTGAAAATAATGGCCTGTATTTCTCACGCTA  3478

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3479  TACTTAAAAAAAATAACTAACCTTTTAAACAAAGATATTCAAACTCACCCTTGTGCTGAAAGCACTCACATTTC  3552

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3553  TGTGTTCATTCCTGAAAGGGCGTTTTAGAGTCCCCGTTTCTACGTTCTATGTGGCACCCTCTTGCCGAGGGAAC  3626

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3627  ATCCAGAATCCCTCCACTTCCTGTCTAGTTTGAGGCCTCAACACCTTCATGATCCAGAGTCCTGCGGCTATGAG  3700

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3701  GGGGTGGGCCCACCACCGCCCAGCCCTCCTTGGTGGACGTGGGGACAGGTAGGAGCCTAGGGAAAGGGGTGGGC  3774

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3775  GGGCTCTGGTGTGACGGCGTGAGCGCTAGCCAGGAAGATGGGGCCAGGGCTTGGCATGGCACCTCACCTGTGGG  3848

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3849  GGAACTCGGCGGAGCTTCCTGGCGGCATCTCCCCCTCTTGCCTTGGTCCTTTCTATCTTTGTTTTAGGCCAATT  3922

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3923  TCTAAAAAGACTGAGGCCTCCTTCAAGGTTGAACAGATTTCTAGAGCCTTGTTTTTGCTGTGACAAGTCCCTAG  3996

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3997  TCCCTGTTCACAACTCTGAAACCAAGAAACCTGAGAACCAAGAGAACTGAAATGAAGCCCGTTGGTCTCAGCCT  4070

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4071  GGCTTGAGCCAACATGAGGCTCTCTGCTGCCTTTTGTTTTCTTAGGTTTTGCTGAGAAACGGGAGTGCGTTCTG  4144

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4145  TGTCGGTGTTTGTGACGCCCTGAGACCCTGCTTGGCCTAGCTAAAGTCCAGAAGGCCTGGGCCCCACAGGGCTT  4218

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4219  GGATGAGGGCTCATGGGCCTGTACTTCAGGAGGCCTGAGAGGCCCGGTCAGTCCCATGAGGCTACTCGGCTTGG  4292

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4293  CCCGCAGGTCCTCCGAGGCACAGGGCAGAGGGACACCCCAGGGACCCATCAGACTCACGACACAGAGAAACTCA  4366

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4367  AGTGGGGTGCCAGGGCCGGCCACAGAGGCCACGGGCTTCCTGCCTGTGAGGAGCCGCCCTGTTTGTCTGAGCCC  4440

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4441  TTTGGAGATTTAGGTTGAGTCATGAGAACCGGTCATTGGAACATACACTTTATTATGTTACAAAAACAAAAATC  4514

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4515  CCCACTGAAACACAGCTAAAAAAATAACACATTTTCCCAAGATTACATTACCAAAAACAGTTGTTATGTCATTG  4588

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4589  GAGGGCGTCCATTAATACTGCTCGGAGAAGCACGATCTTACACGAAAAACACGGATGGGATTTCGTTTTCACCT  4662

Query  187  ----------------------------  186
                                        
Sbjct 4663  TAAAGCATTAAAGTGCTTTAACTGGTAA  4690

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