Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_15487
- Subject:
- NR_033711.1
- Aligned Length:
- 6409
- Identities:
- 164
- Gaps:
- 6223
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTTGTTGCGGGATCTCACAGGCTTTAAACCGCGGCGCCGCGGCGCCCGGGTGTGGATCCCTAGATGGGAGCCGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGATGGGCCGGGTGCCTGGTGGGTGGCAGTCGGGGCTGACGGCGGCGGCACTTTGCCGCCTCAGGCCCTGGACA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CCTTCACCCCGCCGCCTGCCCAGGCGGGCCGGCCCTGCCCGTCCACCGGCCGCCGAGAGTCCCCGGCCTTGGGT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CCCCGGGGCCGCTGACTGGCCTCGGTCACCTCCCGGGGAAGGCTCCCGCGCCTCCATCTGCCCCCGCAGGAAGG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GACCCTCTTCTCGCCCGCGAGGCTTCTCCGGGTGGGATCGTCCTGGCCCCCAGCCCTAAGGGATCCGCCCCCTC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CGAGCATCCGCCGCCCCTCGGAGACCACTCCAGCTCGGACGGACCCACTCCAGCCCCCGCTGCACGCGGAAGCG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CTCATCCTCCCCGCCTGCCCCGTTCCCTCCCCCTTCTCCTGTGGGACAACCAGGGACCGCAGCTCCCCGCTCCC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CAGGTGTGGGGGCTCCGACACGAACGCCTCTGCTCGCAGGGCGGTGAGCGCAGATCCCACGGGTCCCTCGGTCG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GGGGTCGAGGCTGCTTCCGTTTCCATCCCGGACCCGACAATGGGCGGGAAAAAGAAGGCTTTACACGACTACGC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GGCGGAGTTCACCGACCTGGTGGTGAAGCACCTGATTGAGCACAGTGACTCTGGGGACACGTCTGTGGTGGAGA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CCCTTTACTGCAGGGCCTGCGAGCTGCCCGTGCGCGTGCGGAGGGACCGCATCCTGGAACACCTGTCCTCGGGC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AGGCAGCACGGCCTGCGGACGCCCATTCTCATGTAAATGTCAGTGCCAACGCTGGTGTTTCAGGAGTCATCCCA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GCGGGCTGCGGGCTATTTTAGGATTCTCTGCCCTGCAAACGTTTCCAAAGTACGTGGACAGGCCGCCTGATGAC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 ACTACGTTTACGGGATCTGCTAGTGGCTTGCCTACTTAGGGAGTAAACCCTGTGAAGTCTCGCAGTTTTGTTAA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 AGTGTGCGTGGCCACCTGAATGCTGCCTTATCACAAGCCAGATACATACTGGTCTGTAGGGTAACTCCCCACTG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TTGATCCTCTGAGATGATTGTGGACTGGGTGCTGTGAGTCCTGCCACTTTGTTTAAGTGAATGTGTCTTTTGTC 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CAGCTCAGCCGCCTCGGATCTCGCTGCCACCAGCCTTACTGCACACCCGTGCCACCCGCCCTTGCCCCGTCAGC 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CTCAGCCTCAGCTCATTCTCTCAGGCAGTCCCAGCATTGGCACGGTACCTCCTCCCGCTGTGGGCCACACGTCT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 CTGCTCCCTGTCAACCCTCCTGCCATCAGCACCACCACCAGCGACTTGTCTGCCCGGGAGGATGCAACACCATC 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TGCCTCCACCGGCCACCTTTCAGTGTTTCCTGCTTTCCAAGTAAAGATACCAGCAGTGCCCTCAGAGCAGACCA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GCCAGAGTTTTTCTGAAGCCTCCCACAGGGTGCTCCCCGGAGGAGGCCCGAGATGCTCTCGTGACTTTGGAGCC 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GGGGTGGCTGGCCACCTTGGCCTGGGCATCTTTGGGGTGGGCTTCGGGAGCCCGGCACTGCTGCAGAGTGTGGT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 GGATGAGAACAGCTGCTGCTTGCTGTACGTGGTGGAGGACCAGCTGTGTGATGTGGAGCAAGCCTTCAGAGCTG 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 AGCATTTGGGCCAACACCAGAGTGGTTCGGGAACAGGATGCAGACATTGTCCTCAACGACCAGCGGCACTTTGA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TCCGGTTTTCCAGTTCTTGCACAAGCAAGTTTGTGTCAGCCACGCCCTGGGGAGGATCCACTGGATCACCGCCG 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TCACTGCCTGTTCCCGGCGGCCTCTCCGGCTTCCCTAAAGAGAGCAGGTGGGACTTTCTACAACGCTGCTGTGC 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 ACGACGTGGATGCCGTATGCATGTTGCTGGGGGAAGCCACTCCGGACACTGTGTTTTCTCTGGGACATGTCTTC 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TGCCCAGATATGGCCGCCTTAAAAGATGCAGATGCTGTTGTGATCAGCATGAAGTTTCCCTGTGAGGCCGTGGT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 TAGCGTGGACATCAGCCAGCACTGCACAGACAGCTGCGACCAGGACGTCAGCCAGCACTGCACAGACAGCTGCG 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 ACCAGAGACTGGAGGTGACCCTTGCCCTTTTCCACCCTTCGCCAGTCCACTGTGAAAAGCTGGGTTGATTGTGC 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 GGGTTAGATAGAGGTCATCAGCCGGGTTGATTGTGTGGGTTAGACAGAGGTCATCAGCCAGGTTGATTGTGTGG 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 GTTAGATAGAGATCATCAGCCTGGTAGATTGTGTGGGTTAGATAGAGGTCATCAGCCAGGTTGATTGTGCGGGT 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 TAGATAGAGATCATCAGCCGGGTTGATTCTACAGGTTAGATAGAGGTCGTCAGCCGGGTTGATTGTGCGGGTTA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 GATAGAGATCATCAGCCGGGTTGATTGTGCGGGTTAGATAGAGGTCATCAGCTGGGTTGATTGTGTGGGTTAGA 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 TAGAGATCATCAGCTGGGTTGATTGTGTGGGTTAGATAGAGGTCGTCAGCTGGGTTGATTGTGCGGGTTAGATA 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 GAGGTCATCAGCCGGGTTGATTCTACAGGTTAGATAGAGGTCATCAGCTGGGTTGATTGTGCGGGTTAGAGATC 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 ATCAGCCGGGTTGATTGTGCGGGTTAGATAGAGGTCATCAGCCGGGTTGATTGTGCGGGTTAGATAGAGATCAT 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 CAGCTGGGTTGATTCTGCAGGTTAGATAGAGGTCATCAGCTGGGTTGACTATGTGGGTTAGATAGAGGTCGTCA 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 GCCGGGTTGATTGTGTGGGTTAGACAGAGGTCATCAGCTGGGTTGATTCTGCGGGTTAGATAGAGGTCATCAGC 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 TGGGTTGATTGTGTGGGTTAGATAGAGATCATCAGCTGGGTTGATTGTGTGGGTTAGATAGAGGTCATCAGCTG 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 GGTTGATTGTGTGGGTTAGATAGAGGTCATCAGCTGGGTTGATTGTGTGGGTTAGATAGAGGTCATCAGCTGGG 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 TTGATTGTGTGGGTTAGATAGAGGTCATCAGCTGGGTTGATTGTATGGGTTAGATAGAGGTCATCAGCTGGGTT 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 GATTGTACGGGTTAGATAGAGGTCGTCAGCCGGGTTGATTCCGCAGGTTAGATAGAGGTCGTTAGCTGGGTGTG 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 TGGGTCCCAAGGCGTGCTGCAGATGGAGAATCAGAATTCCTTGGGCATCACCGGGCGGGGCATGTCCCTGTCCC 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 TTCGCTCCCAGACCCAGGCTAGCCGCTACCAGGACTCCTATCGAGAGCTCTTCAGACACTTTGTCAGAACCCTT 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 AAAGGTGGGTGACGTTTTCAGGAGGAACCTGGGATGTCCTGATGCTCAATGGGTAGATGCCTTCCAGGCTGCAG 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 TCAGTGCAGATGATATGCCAATTTCAGGTGGAAAATTGCATTCCAGATACCGGGTTCAGATTTGAAATTGTCCA 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 TCTCAGTGATCATTTACGTTGCGTGTACTTGAGGGAGATTCTGAGAGATGCTCCTTTGGGGTTCTGTGCGTGTA 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 CCATGTTGCCTGACACGTCCTGAGAAATCTTCTTAAACTCTGAGTTTATAAAATAACTACTTCTGAACTCCTGA 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 GATCTAGTGGATACCATGTATCCTGGAAGATAGGACACTTTCTACCCTCTGTCAGTCCTGGGGGTGACTGGGAA 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 CCAGAGAGGTTGAGCAGAATTCCTGGACCTGGGTGGGGCTTGTCCAAGAGGGGCAGGTGGGCCTCTCTAGGATC 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 AGTGTCCCACCCAGAGGCCAGTGGCCCCTTCACATGCCCCAACAAGAGGAAGACTGTCTGGCTCCGCAGTGTTG 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 GGTTTTGTCCTGAATCTGTGCAAATGTGCAGGGAAATAACCTCCTGAAATCACCAAAGAGCAGTTCCTCAGGGC 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 CTTCCGGGTGACCGTGGCCGTGGAGCAGTCGTGGTGAAACCGGTCAGCTGTGGACCTGCCCTGCGAATCGGCAG 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 AGGCCTCCGTGGTGAAGACAGAAGCTCCGTGAACCAACTCGAGGCTGGAGCCAAGATCCTGCCTGATATCCAGT 4070
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4071 TGCCTGTTTCACTTGTTACTGTTACTGGGAGAGGGAGACAAAACCTCATGGCAATCTTGTCCTCACTGGAGACT 4144
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4145 CAGAAGGGGAAGCATTGGGAAACCATGTATGTTTCATTTCTGGTTTAACCAGGCTTTTCAGGATGGGACTTCAG 4218
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4219 ACCAAGGACACAAGTTGGGCTTGCTTAGGTGTTTTGTGTTGTGCGCAGGCCTCAGAGATGCTCTTCCGGTCAGA 4292
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4293 GTTCCCTTGGCAGGGCCTTGGAGGCCTCTGGTTGGCTCTCTCAGGAAGAGGGCAGGTCAGGGATTGGGCGGTGT 4366
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4367 AAATTGACTCAGAAACCTGCGGTTTCAGCTTTTCTGTGGCAAACAGGGCCGAGGGCTGGTGAAGCTGTTAAGGC 4440
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4441 TAAATGTCGCATGCATGAGGCGGGCTGCAGGCCTCCTTAGGCCTTTTTTGGGGTAATTACACCAGTATTTAAAA 4514
Query 1 ------------------------------------------------------ATGCAGTGGCGCCATCTCAG 20
.||||.|||.||.|||||.|
Sbjct 4515 ACATTTTTTTTTGTTTGTTTTGAGATGGAGTCTTGCCCTGTCACCCAGGCTGGAGTGCAATGGTGCGATCTCGG 4588
Query 21 CTCACTGCAACCTCCATCTCCCAGGTTCAAGCGATTCTCGTGCCTCGGCCTCCTGAGTAGCTGGGATTACAGGC 94
|||||||||||||||.||||||||||||||||||||||..||||||.||||.|||||||||||||||||||.||
Sbjct 4589 CTCACTGCAACCTCCGTCTCCCAGGTTCAAGCGATTCTTCTGCCTCAGCCTTCTGAGTAGCTGGGATTACACGC 4662
Query 95 GTGTGCCACTACACTCAACTAATTTTTGTATTTTTAGGAGAGACGGGGTTTCACCCTGTTGGCCAGGCTGGTCT 168
|||||||||.||.|||..|||||||||||||||||||.|||||.|||.|||||||.||||||||||||||||||
Sbjct 4663 GTGTGCCACCACGCTCGGCTAATTTTTGTATTTTTAGTAGAGATGGGATTTCACCATGTTGGCCAGGCTGGTCT 4736
Query 169 CGAACTCCTGACCTCAAG-------------------------------------------------------- 186
||||||.||||||||..|
Sbjct 4737 CGAACTACTGACCTCGTGATCCACCTGCCATGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCATGCT 4810
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4811 CGGCCTAAAAAACAATTTTCTTGAAGAATCCGATTTTGTGCATAGTAATGACACAGCACCATTCCTGAGAAATA 4884
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4885 GGAAATATATGTGTGTGGTATGAAAAGCCCATATTCTGTTCTTGTCACCTGAATCTAGGCTTCCTCTTTGGATG 4958
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4959 TGAACGCGGGAATGAACAGTGGCTGTTTTCCACCCAAAGGGGCGTGGAGACCTTTTGGAAACGGGCTTTCTCCT 5032
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5033 TTCCATTTTGCAGCCGGGGGCGGGTGGAAACCTTCCTTCGAAGGGTAGTGCCTTGGGGAGCAGCAGACCTGCTC 5106
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5107 TGAGTCCAGCTTAGCTTTCCAAAATTCTGTGTGGAACTTACTGGAGATGTTTTTATATATTTGAAAATAATGGC 5180
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5181 CTGTATTTCTCACGCTATACTTAAAAAAAATAACTAACCTTTTAAACAAAGATATTCAAACTCACCCTTGTGCT 5254
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5255 GAAAGCACTCACATTTCTGTGTTCATTCCTGAAAGGGCGTTTTAGAGTCCCCGTTTCTACGTTCTATGTGGCAC 5328
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5329 CCTCTTGCCGAGGGAACATCCAGAATCCCTCCACTTCCTGTCTAGTTTGAGGCCTCAACACCTTCATGATCCAG 5402
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5403 AGTCCTGCGGCTATGAGGGGGTGGGCCCACCACCGCCCAGCCCTCCTTGGTGGACGTGGGGACAGGTAGGAGCC 5476
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5477 TAGGGAAAGGGGTGGGCGGGCTCTGGTGTGACGGCGTGAGCGCTAGCCAGGAAGATGGGGCCAGGGCTTGGCAT 5550
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5551 GGCACCTCACCTGTGGGGGAACTCGGCGGAGCTTCCTGGCGGCATCTCCCCCTCTTGCCTTGGTCCTTTCTATC 5624
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5625 TTTGTTTTAGGCCAATTTCTAAAAAGACTGAGGCCTCCTTCAAGGTTGAACAGATTTCTAGAGCCTTGTTTTTG 5698
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5699 CTGTGACAAGTCCCTAGTCCCTGTTCACAACTCTGAAACCAAGAAACCTGAGAACCAAGAGAACTGAAATGAAG 5772
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5773 CCCGTTGGTCTCAGCCTGGCTTGAGCCAACATGAGGCTCTCTGCTGCCTTTTGTTTTCTTAGGTTTTGCTGAGA 5846
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5847 AACGGGAGTGCGTTCTGTGTCGGTGTTTGTGACGCCCTGAGACCCTGCTTGGCCTAGCTAAAGTCCAGAAGGCC 5920
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5921 TGGGCCCCACAGGGCTTGGATGAGGGCTCATGGGCCTGTACTTCAGGAGGCCTGAGAGGCCCGGTCAGTCCCAT 5994
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5995 GAGGCTACTCGGCTTGGCCCGCAGGTCCTCCGAGGCACAGGGCAGAGGGACACCCCAGGGACCCATCAGACTCA 6068
Query 187 -------------------------------------------------------------------------- 186
Sbjct 6069 CGACACAGAGAAACTCAAGTGGGGTGCCAGGGCCGGCCACAGAGGCCACGGGCTTCCTGCCTGTGAGGAGCCGC 6142
Query 187 -------------------------------------------------------------------------- 186
Sbjct 6143 CCTGTTTGTCTGAGCCCTTTGGAGATTTAGGTTGAGTCATGAGAACCGGTCATTGGAACATACACTTTATTATG 6216
Query 187 -------------------------------------------------------------------------- 186
Sbjct 6217 TTACAAAAACAAAAATCCCCACTGAAACACAGCTAAAAAAATAACACATTTTCCCAAGATTACATTACCAAAAA 6290
Query 187 -------------------------------------------------------------------------- 186
Sbjct 6291 CAGTTGTTATGTCATTGGAGGGCGTCCATTAATACTGCTCGGAGAAGCACGATCTTACACGAAAAACACGGATG 6364
Query 187 --------------------------------------------- 186
Sbjct 6365 GGATTTCGTTTTCACCTTAAAGCATTAAAGTGCTTTAACTGGTAA 6409
