Nucleotide Global Alignment

Description

Query:
ccsbBroad304_15487
Subject:
NR_034072.1
Aligned Length:
3195
Identities:
160
Gaps:
3012

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGGAAGGGCGGGTCAGCGCGCCGGCGCAGTGCGGCGGTCACAGGCTGAGTGCTGCGGCGCGATCCTTGCTTCCC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TGAGCGTTGGCCCGGGAGGAAAGAAGATGGTGCTGGATCTGGATTTGTTTCGGGTGGATAAAGGAGGGGACCCA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GCCCTCATCCGAGAGACGCAGGAGAAGCGCTTCAAGGACCCGGGACTAGTGGACCAGCTGGTGAAGGCAGACAG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CGAGTGGCGACGATGATCAAAGGCTTCTCCTGAGACTGCGTCACTTCTGCAACACAGTAGATTCATTCCTTCGG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TATCGGAAGCATTTCGGGGCGTTGGAGGCCGCTCTTGGCCAAAATAAATGACCCTGAAGCTTTTCGGAAGGCCA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TCCCCCGACCTATGGGCATACCTTTAAGAATTAGAAAAGTCTTTTCCGTGGTAGATCAAACGCGAGGGGAGTGA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GGAGGCGAGCAAAAGATTGTAATGACTGAAGCTGTTTAATTGTGATTTGTGGACGTTTTCCTTTAAAGACATTG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GCAGAGTTGGGCTAGAACCTGGAACTGCCGGATCTTGGAGTCATATCGGGCATCTATCATGAAGCCGAATAAAA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CCATAGAACCATCTGCCCATAAATCTCTGCCTGTATTAACTGGAGTGGTCGCTGGTTGGGCGGATGCTGTCAAG  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TACTTGTGATTTGATTTGTCTGATGCAATAGGTCTGCAACCATCTGGGAGCTAGGTCGATGACAGTACACTGCA  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  AAGGCAGCCACTATCCAAGAGTGTGATGGATTTCTATTAGGAAAATTGATTTTCTCCTGTTTATAAGGATCTTG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  GATGTCAAAAGAATATTTGTTTAACTTGAGTTTTGTGCTGATTCTATGTCTTAGGCCCTCTATTGTAGTAGTTT  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  GTTTGATTGTGAGATTCCACACTTGACCTGAAGTTTCGAGTTGCAATGGAATTTAATTTTGCCACATTTTTTGT  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  TTAGGATAAAACTAGCCTGAGCACTGTTCTACTGAATCTGAAGTCAGGAGTATCAGATTTTTGTGTCAGTCCAG  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  CCCTTAGCCAGTGCTAAATGACTTTGAATGTGTTAGCTAGTCTTTTGGGTATAATGTCCACATCTGAGGGATTT  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  GTCCCTTATCTGAAAAGTAGATAGGTGGTGAGTTCTTCAGGGACAAGGATTCAATTTTATTCATACAGTATATA  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  TGTGGATATACATATACACATTTATACATAAAATCCCAGTACCTAGCACTGTACCTGGTCCTTGGTAAGGCCTT  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  GATAAAGGTTTGTTAGAGGCGTGAATATTTTCTGTCTTCAGGGCACTTTATATTCTTTATGAAAAGCAGTTTAT  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  GTAGTTTATGTTATTGTTTTAAAAAACTTAATCCTAAATGTGAAGTCATTTCTTTTCTTTGTTTTGTTTTGTTT  1406

Query    1  ----------------------------------------ATGCAGTGGCGCCATCTCAGCTCACTGCAACCTC  34
                                                    .|||||||||.|||||||.|||||||||||||||
Sbjct 1407  TGTTTTTGAGACGGAGTCTCTCATTATCACCCAGATTGGAGTGCAGTGGCACCATCTCGGCTCACTGCAACCTC  1480

Query   35  CATCTCCCAGGTTCAAGCGATTCTCGTGCCTCGGCCTCCTGAGTAGCTGGGATTACAGGCGTGTGCCACTACAC  108
            ||||||||.|.||||||.||||.||.||||||.|||||| .|||||||||||.||||||.|||..||||.||||
Sbjct 1481  CATCTCCCGGTTTCAAGAGATTATCATGCCTCAGCCTCC-AAGTAGCTGGGACTACAGGTGTGCACCACCACAC  1553

Query  109  TCAACTAATTTTTGTATTTTTAGGAGAGACGGG-GTTTCACCCTGTTGGCCAGGCTGGTCTCGAACTCCTGACC  181
            .||.||||||||  |.|||||||..||||.||| ||||||||.|||||||||||||||||||.|||||||||||
Sbjct 1554  CCAGCTAATTTT--TTTTTTTAGTTGAGATGGGAGTTTCACCATGTTGGCCAGGCTGGTCTCTAACTCCTGACC  1625

Query  182  TCAAG---------------------------------------------------------------------  186
            |||||                                                                     
Sbjct 1626  TCAAGTGATCCGCCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCATGCCTGGCCAATAGT  1699

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1700  TTATTTCCAATGCATCTATTAATTTGATTCTTTTCTATTTGACAACCCTTTCCAATATTCTCTTTGCATCCAAA  1773

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1774  TGGAATTTATGTTTTTTCCCAAGTTCCCAACTGCCCAAGGTAGACACTGGCAGATTTATATCAAGGTTCTTTGA  1847

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1848  CATCTTGAACTTCAGATCAGAGGATGGAGTTCTTCTCTCATTGCCTTGAGCAAGGGCTTATAACCAGAGCCACA  1921

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1922  TTAAGAACTCAGATCATGCTCCCTAATTGAGGACACATAGCAAGCTTCACCAAGCCCTCCACTACAACTATACC  1995

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1996  AATTTGTCTTCCTGTAGACTTACAAGGTACCACTAGGGTTCCTTTGGAGAACTCAGGAGTCCAGTATAACTTGG  2069

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2070  AGTGATAATACCACATTGGAACTCACAACTCTTCTAACTCCAGGGATTTGAATGTGATTTCTTCTTTTTAATTC  2143

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2144  AGAGTAGCGTAATGATCCTACACTTGGGCATATTTGTCTTGGCCCCACTCCCAAAGCAAATAGATTTCCATGTA  2217

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2218  ACTGGAAATCTGCTGCAAACCCCAAGAATTTTATCCTCCCTCAAAAAGTGCTATCCTGAGTGGTTTTTTTTTTC  2291

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2292  TTTTTACTGTACATTGAAAATTGAAGTTGTTGTTTCCTTTTTTTTTAATTTGAGACAAGGTCTCACTGTGTCAC  2365

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2366  CCAGGCATGATCACAGCTCACTGCAGCCTCAATCTCCCCAGGCTCAGATGATCCTCCTGCCTTAGACTTCTGAC  2439

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2440  TAGCTGAGACTACAGGCGCAATGCCACCATGCCTGGCTAATGTGTGTATTTTTTGTAGAGATGGAGTTTCGTCA  2513

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2514  TGTTGCCTAGGCTGGCCTCAAACTCCTGGCCTCAAGCGATCCTCCCACCTCGGCCTCCCAAAGTGTTGGGATTA  2587

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2588  CAGGCATGAGTCACCATGCCCAGGCTAAAGCTGTTATTTCCTCATAACCTTTACTGCACATGTTTTAAAACAGG  2661

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2662  TCCTTATCATTGTTTGCCCCAGCAACTGGAATAGCTTTCTATCTGCTTTCAATCTTAACCCAGTCTCACCAGGG  2735

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2736  CATATAATCTTTCTAGAATGCAAATCTGATCATTTTACTTGAAGGCTTAAGTTTTGCAGTGACATACTTTAGAG  2809

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2810  CAGCACTGTCTGATAGGAATAGAATGTTAGCTTCATGTATACAGATGCTCCTTGACTTAGGATGGGTTTATGTC  2883

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2884  CCAATAAATCCACCATAAGTTGAAAATATTGTAAGTAAAAAATGCATGAAATACACATACCCTACTGAATATCA  2957

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2958  TAGCTTAGCCAAGCCTACCTTAAATGTGCTCAGAACACTGATGTTAACCTACAGTTGGGAAAAATCATCTTACA  3031

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3032  CAAACCCTATTTTATAATAAAGTGTGAATATCTCATGTAATTTATTACTATTGATCATAAAGTTTAAGCATTAT  3105

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3106  AAGTTGGCGATAGTCTGTAATTGTTAATTTGTTTGTATCCAATATAAAAAATATAAAGAGAAACAGATGAAATT  3179

Query  187  -------------  186
                         
Sbjct 3180  AAAAAAAAAAAAA  3192

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