Nucleotide Global Alignment

Description

Query:
ccsbBroad304_15487
Subject:
NR_049794.1
Aligned Length:
4391
Identities:
161
Gaps:
4208

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CTATCAACTCCATCTGTCACAAAAATTAAGGCTAAATCTCCTCTCCAGAAGCAGAGGGAGCCGGGGCTCCGACG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CGCTCAGCGTCGGGCTGTCTGCCTCTCCCTAGAGGCCAAGTGAATTTGAAATGGCAAAAGTCACAGCCGGAGGC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CCAGCACTAGGAGATTCCTCCGGCTGCGGGAAATCTTCCTGTACCTGCTGAAGCTGCTGCGTTCCTCAGAGGCG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CTTGGTCTGCCGTGGGAAGCTGCACCTCTGCAGTCCCCAAAACCAAAATCAAACCTTAAAAGAGCCAGACTGAG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  AAGCCAGTCACCACGTAAGACATCTGGACCACCTTCAGACTCGCATGCTGTGAGGAAGCCCATGCTTACTATGT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GTAGAGGATACATGGAGAAGGAAAGAGATGCCTGGCCAGCTCCCTGCTGTTTCAGCCATGCAGAGGTGCTGAGC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  AGCTAATTGGAGGGGATAGTATGAGCCTCCAAAGATTAGGGAAGAAAATTGCAGTTGAAGAAAACTTGCTTTGG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  TTCAATGCAAAAATAATGGGATGAATGGCATGCTGAAATATCATATGACTTACGAAAATGATGAATGGTTTATT  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GAATCTACATATGTGGAACCCATGAATGGGAGTCGGAGAAGGGGGCAACTGTATACGCAAAAAGCTATCATAAT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TGCCAAAATAGTGATAACAATGTTGAAACACTACTGGGATTACTACTGTTAATGACTACCAGTGATCAAGCACC  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  TCCCCTGCCCCAGTGTTTGCCTGCCTTGTTTGAAGACACGAAAAAATGTACACAAAATGATTTAGAACTGTTGA  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  ACTTTTCAGAAAATAATTTAAAATCATCTACCTCATAACTAAAGGACACTGAATTGGAGCCAGCTGATGTAAGG  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  AGCTTACCTTGGTTGCCACCTTCTGGTCTCTGTTTGAGGAACAACTGCATGTGATTAAGGATGAAGAAACTGAG  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  ACCCCAAGAATTTAAGTAATTTGTTCAAGGCAACACACTGCTATGTGGTAGAACTACAAATTGAGCCCAAATAA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  TCCAGCTTCAGATACTATGCAAAGGTATCCTAGGTGTGGGGGTGATAACCTGGTGACAATCCCTTCTCAGAAGG  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  AAAACAGGTCCCATCTACAGAGGTGAAGCAGAGTGTGGAACTGAAAAACTCAATGGAAGAATGGCTATTAAGAT  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  TTAGGACGGCTGGGAAATAATAAAGTAATAATAATAATACTAGGTATTGACGTGTGCTACATGCCAGGCCTTGG  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  GTGACATTTGGATTGATTCCCATTTTCTTTACTTTTCAGCAGTGGGGTCTTTCACCTTTCAAGCTCTGCCTGAG  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  AAGTCAACATGGTGGCATTTGGCTAGGTTCTTTTAGGCAACCAATTGTTTTAACATGATTTGTTGAAAAGCCTA  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  TTCTCTCTTTCATTGAACTATAATGCTAGCTCTGTCATAAATCAAATTTTCATTTGATTTATGATATGAAAATT  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  ATATGCATTTGATTGATATGCATTTTTTCTCCAATGATACTCAACTGTCTTAATTATATAATTTTGTAGTAATT  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  CTTGGTATCTAATTAGGCAAATACCCACTCCCAACCCTGTTTCTTTTGTTTTTAAATCCAGGGGTGTTTTGGAT  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  ATTCTCGTTCATTTGTGCTTCCACCTACATTTTTCAGTTAACTTGTCAGGTACGAAAAAATAAAAGGCAAAATT  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  TTTTATCCTTAAATCAATTTGGGCAAGTTTGCAGTTTTTTCTTGTATTGTAACTTCCAATCTATGAATATGATC  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  TATTTTTTCACCAATTTATGGCTTCTTCCAATAACATTTTATAATTGTCTTTTTAGAGGCCTTATCTTTTGTTT  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  AGATTCATATCTAGGTATTTAATATTTTTGATGCTGTTATAAATGGTATTTTTAAAAATATATACATTTTTAAC  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  TATTTCACATAGAAAACTTTAATGGATTTTTAAAATGTAGATTTGTATTCAGTAAACCTGTTAAAATCTCTTAG  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  AATGTCTAAGAGTTTATTTATTCAATTTGATTTTCTTTTTTTTTTTTTCTCCTGGAGACGGAGTTTCGCTCTTG  2072

Query    1  --------------ATGCAGTGGCGCCATCTCAGCTCACTGCAACCTCCATCTCCCAGGTTCAAGCGATTCTCG  60
                          .|||||||||...||||||||||||||||||||||..|||||.|||||||||.||||||.
Sbjct 2073  TTGCCCAGGCTGGAGTGCAGTGGCATGATCTCAGCTCACTGCAACCTCCGGCTCCCGGGTTCAAGCAATTCTCC  2146

Query   61  TGCCTCGGCCTCCTGAGTAGCTGGGATTACAGGCGTGTGCCACTAC---ACTCAACTAATTTTT-GTATTTTTA  130
            ||.|||.|||||||||||||||||||||||||||   |.||||.||   .|.||.||||||||| |||||||||
Sbjct 2147  TGTCTCAGCCTCCTGAGTAGCTGGGATTACAGGC---TCCCACCACCATGCCCAGCTAATTTTTGGTATTTTTA  2217

Query  131  GGAGAGACGGGGTTTCACCCTGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG------------------  186
            |.||||||.|.||||||||.|||||||||||||||||||.||||||||||||||.|                  
Sbjct 2218  GTAGAGACAGAGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCGACTGCTTTGGC  2291

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2292  TTCCCAAACTGCTGGCATTACAGGCGTGAGCCACTGCGCCCTGGCCTATTCTACTGGATTTTCTATGCAATTGT  2365

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2366  GTTATAACTCATCATAAAGATAATTTTATTTCTTTTCCACAATCTTTACAGGTTTAATTTTTTTCTATGCCTTG  2439

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2440  CTGCACTCTCTATGATTTCCAGTATTGGCACTACTCTGGCCTTTGGTCTTTGCTCTTGCATCAGCCTTTCATAA  2513

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2514  TTGGGTATGTTTGTTGTAAGTTTTCTGTAGAGAGTCTTTATGAGGTTAAGAGATTTGTTTCATTTCTAGTTTAT  2587

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2588  TAAGAGATTTTATTATAGATCAATGTTAAATTTTATCAAAATTTCTCCATTGCATTTCTATTGAGATGATCACA  2661

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2662  TGATTATTAAAAATTAGTATAAAGATTTATTATTTTGATATTTTAAAATCAGGTTTATTGAGGCATAATTTATA  2735

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2736  TATAATAAAATTTACCCTATTAGAGTATCCAGTCCAGTAAGTTTTGGTAAATGTATGCGAATAACACAATAAAC  2809

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2810  AGGTTTAGAACTTTTCCATCACCACAAAAAGTTTATCAGGCCCCTTTGCAGTTAATACTCACCTTCTCTCCAGC  2883

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2884  CCCAGTAAACCATGGATCTGCTTTTTGTTACTGTAGTTTTTCCTTTACTTTGATTTTTTTGAGTGTTAAGCCAG  2957

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2958  CCTTACATTTCTGAGTTAACTTGGTCATGATATCTTCTACAAACATTAATGAATTTAGTATGATTGGCTGATGC  3031

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3032  CTTTGCTTTCCTATACTGTCCTTGCCTGGTTGGTACAAGGATTATATAATACTTATAAAGTGAGTTGAAGACAG  3105

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3106  TTTCCTCTTTTCACCAGCTGGAATAATTTATGTATTATTGAAATTAATTGCTCCTTAAATACTTGGCAGAATTC  3179

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3180  ACTACAAAGGCACTTAATTCTAGACCTTTTGGAGGAAGATAAAATACTGATTTTTTAAATCATTATTTTATTTT  3253

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3254  TGTAATACAGCTTATTTTTCCAGAAACTTCTACTTTTCGTTTACATCTTCAAGTCAGATTAAAGTTGTATTAAT  3327

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3328  AACCCCTTATTATTTAAATCTCAGCAGAATGTGAAGTTATGTTCCCCCTTTGTATCCATTTTTTTCTCTAGATA  3401

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3402  TTTTTCTGTTACCTGTTTTAAATTTAATTCCATTGTGGTCAGAGATAATACTTTGTATGACTTGCATTCTTTTA  3475

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3476  TGTATATTGAGACTTGTTATAAGGCACAGAGTATGGTTTATCTTGGTAATCATTCGTGGCACACTTAAAAATCA  3549

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3550  TGTGTTTTCTGCTATTGTTGAGTGGGATGTTCTGTAACTGTGAATTAGGTCAAGTTAGTTGACAGTGTTGTTCA  3623

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3624  AGTCTTTTATATTATTACTGACTTTCTTTCTACTCACTCTATCAATTAGTGAAAGGTGTCAATATTTCCAGTTA  3697

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3698  TAATCATGGATTTGTCTATTATTACTTTCAGTTAGAAATTTCTAGCTGAAATTATCTATTTCTACTTTCAGTTA  3771

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3772  GTGTTAGCTTGCTATATCTTTTTTCCATCCTTCTTCTTTTAACCCAATGTATCTTTATATTGACATTACATATA  3845

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3846  TGATTTATATTATATTATGTTACTATATCTTGTATGCAGCATATATTTGGATCTTTTTTATCCAATCTGATGAT  3919

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3920  CTTTGCTTTTTAATTAATGTATTTAGATCATTTACATTTACTGTGATTATTAATATGTATTAAGTTCAAATCTA  3993

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3994  CCACTTTGGTATTGAATATCTAATTGTCCCATTTGTTCTTTGTTTCAAAAAAACTCTTTTTTTGCCTTTTTTTA  4067

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4068  TATCAAGTATTTTAAAATTCTATTTCATCTTCTTTGTTTGCTTATTAGCTATAACTTTATTTTGCTAATTTAGT  4141

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4142  GGTTGCTTTAGGGTTTATAGTAAACATCTTCAACTTATCACATTCTATGTTCTAGTCATATTATATTATTTAAC  4215

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4216  ACATAGTATAAAAACTTTATTGTAGTATACTTTCATTTTCCTCCAGTAATTGTGCGATTCTTGTCATCTATTTT  4289

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4290  GCTTCTACATGTTATAAACTCTACATGATTTTGTAATATTTTTGTTTAAACAATATTTATTTAGACTTAATAAT  4363

Query  187  -------------------------  186
                                     
Sbjct 4364  AAATAATAAAAATATATGCTAACCA  4388

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