Nucleotide Global Alignment

Description

Query:
ccsbBroad304_15487
Subject:
NR_110386.1
Aligned Length:
3001
Identities:
160
Gaps:
2815

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGCCTTTGATGGGGAGAGTCTGAGATGGGACCCAGGAACATCACCATGAAGCTGTCCAGGATGGATGTGGGACC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CTCTGTCAGACCAGGCCAGTTCTCTTAATGTAAGATCAGCAGGCCAAGGTCCTGGGATATGGGAGCTCCCAGGA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AGTGGACTGGGATGCCTGAGGGATCCAAGAATTAGCAGTGTCCTGTGTGGTCTCGCTGAGGGAAGCCAGGCAAA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  ATCTAGCGGCTCAGCTGTAACAGCCGGAGCTCTTGGCTCCCAAGCAACAGGAAACAATTCTGGCTTATTTAAGC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  AGAAAAGGACTTTATCAAAAGGATCTTGGGGAACTCACAAAATAACCAAGAGGGCTGAAGAATACAGTTGGTGA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GTCGACCAAGGAGGCTGCACAGCAGTCAGGACCACAGCCAAAGTCAGGCAATCCAGGGATGACCTCGCTGCCAA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  ATCCAGGACTCCCTGGCATACACTGCCACCTTGGGACGTGGATATGGTCCCTGTCGCCCCAGGAACTGGAATGC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CATTGACTTGGCGACTGCCACCATCCACCAGAATGGACTTCTGTGCTCCTTGCATCTCTGTATTATTAGTTCCC  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  AACTCCAAGCCTTTGATGGGGGCATCTGATGGATTGAGCCTAAGGATTCTGATGGTGCCTGTTGGCTGCTTCCG  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TGATGTCTGGAGTTGCAAAATGTGCCAGAAAGCAGAAGGATACACCGCTATTCAGAGAGGATTTTCTTAGGGAC  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  TTGAAGAAATTGACCTCAAAATTTCAGTAGATGAGAGGACTGTGGCTGGCCTGTGTCTTTGGCACTGGTTGTTG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  GAGCCCAATGAAAAATTCTACATTGAAGACTAAGGGAAAAAGAGGTTTCATTATAGAGCTGGGACTGATTGCAT  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  TTTCAAAAGGTGGCTGCAACAATATCCCACACACTTTTCTGCTGTATAATCTGCCACTTCTCCATCAAGTAGAG  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  GAGACAATTTCTCCCCTCCTTTGAATCTGAGTGAGTTCTGTGACTGTTTTGACTGATAGAATGATGTGGAAGAC  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  AGACTGTGTGACCTGAAAGGTGAGGTCACAGAAAGCCTTGCAACTTCCACCTGGCCTGTGAAGAACACTTGCTC  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  TTGGGATACTCCTTCTTGGAACCCAGCCACCATGCTGTAAGAAGCCCAATCTACATGCAGACACCACATATAAG  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  GCATCGTAGTCAACAGCCACAGTTAAGTTCCCAGCCGGCAGCCAACATCAACTACCAGTCTTGTGAGTGAGCTA  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  TCTTGGACATCCAGCTTGGTTAAACCTTCAGATGACTCCAGCCCCAGCTGACACCTGACTGCAACCACATGAGA  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  AACCAGGAATGAAAATCCACCAGCTGAGCCCAGTCAACTCATAGAACTGTGAGAGATAATAATAAGTTGTGGTA  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  CTAAGCCACTAGGATTGGGGCACCATGCAATAATAGGTAACCAAGACAGTAGCAACTTTGGTTAGACACATGAG  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  CCATGGGATGACACATAATTAGGTATATTTTTAAAAACTTGGATTCAGCTTTAGGGCAATGTGTCCCTAACATA  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  GAGAGGCACTATTTCAGTTCACATCTGCTGCCTCTGATCAAAACACTCTCTTGCACTTCCAGAGAGAGAGAGAG  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  AGAGAGCAAATGTGTGTATTTACTGACAGGTGTCCCTTTGTGTCCCCATCTGTGTGACTGTGGAGCTCAGTGTC  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  TCTCACACATTCTAGTATGATACTTGGTGCCATATTTGCAGGTCCTGAGGTAAGAACCCATGCTGTTGTCTTCA  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  GAGAGTTTCATGGGTTGGACTGTGCCATATATGGGCAAAAATCCACCCACACGTTTTCTTTTAATCACCTTTAT  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  GGATGTATAATTTACATATATACTTTTTTCTTATTACTTTTTATTTATGTAATTTATTCATTTTTTGAGATAGG  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  GTCTCACTCTCTTGCCCAGGCTGGAGTGCAGTGGAGTGATCATGGCTCACTGCAGCCTTGACCTCCTGGGCTTA  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  AGCAATCCTCCCACTTCAGCCACCTGAGTAGCTGGGACCACAGGCACACACCACCACTCCTGGCTAATTTAAAA  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  AGTTGTTTTTTTTTTTTTTTTTGTAGAGACAGGGTCTCACTATGTTGTCAAGGCTGGTCTCAAACTCCTGGGCT  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  CAAGCGATCCTAGTGCCTCAGCCTTCCAAAGTTCCGGGATTACAAGCATGAGCCACCATGCCTGGCATCTTTTG  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  TGGATGTGTAATTTACATACGTACAATAATATGTACCTATTTTAAGTATACAGTTTGATGAGCTTTGACGAATG  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  TAGCCCACGAAACCACCACCATAATCGAAGTATAGAACTTTTTTTTTTTTTTTTTTTGAGACGAAGTCTCTCTC  2368

Query    1  -----------------ATGCAGTGGCGCCATCTCAGCTCACTGCAACCTCCATCTCCCAGGTTCAAGCGATTC  57
                             .||||.||||...|||.|.||||||||.|||.|||..||||||||||||||||||||
Sbjct 2369  TTGTCACCCAGGCTGGAGTGCAATGGCATGATCCCGGCTCACTGAAACTTCCGCCTCCCAGGTTCAAGCGATTC  2442

Query   58  TCGTGCCTCGGCCTCCTGAGTAGCTGGGATTACAGGCGTGTGCCACTACACTCAACTAATTTTTGTATTTTTAG  131
            ||.||||||.|||||||||||||||||||||||||||...||||||.||.|.||.|||||||||||||||||||
Sbjct 2443  TCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCTGCCACCACGCCCAGCTAATTTTTGTATTTTTAG  2516

Query  132  GAGAGACGGGGTTTCACCCTGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG-------------------  186
            .||||||.||||||||||.||.||||||||||||||||||.||||||||||||.|                   
Sbjct 2517  TAGAGACAGGGTTTCACCATGCTGGCCAGGCTGGTCTCGAGCTCCTGACCTCAGGTGATCCCCCCTCCTCGGCC  2590

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2591  TCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCGCCCGGCCTATAGAACATTTTAATCACCCCAGAGATGT  2664

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2665  GCCCCCTGTGCAGCCAGTTCCCTCCTCTCACCCCCCAGCCCCTGGCAAGCATTGATTTGCTTTGCCACTATCAA  2738

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2739  TCAATTTTTGTCTTTTCTGGTATTTCATATGAATGGAATCATATAGGATAGATTTTTATGTGACTACACACTAT  2812

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2813  TTTAGCATAATATTTTTGAAGTTCTTCCATGTTGTTGTGTATATCTATAGTTAATTTCTTTTTCTCACTGAATT  2886

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2887  GTATACCACTGTATGATGTATCACAATTTGTTTATTCATTCTCCCGTTGCTGGACATTTGGACTGTTTATTGTT  2960

Query  187  -----------------------------------------  186
                                                     
Sbjct 2961  TGGGGCTACTATGAATAAAACTGCTATGGATGTTTATGTAC  3001

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