Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_15487
- Subject:
- NR_148048.2
- Aligned Length:
- 6857
- Identities:
- 157
- Gaps:
- 6681
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGGAGAGATGCGAAATCAGCGGTAGCAGGTGGCGCAGAAGGGAGAGGGGAGCGACCCTGGGGACCGACTCTGGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GACCCTCGCCGAAGAGAAAATAACTCTAAAATCTGGACATGATATACAAAGTGACTGCCTAAAGGAGCTGAAGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GAGGACATAAGTGGATCGCCTCTGCTGTTGCATGTTGGCTTGGAGAACAGAAGATGAGGAGCCAAATAAGCAAG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TCCTTCAGCCCCAGGCTTCTAGCACGGGGCTGCATGTAGGCTATGCATTCTGGGGAGTGAGGAGATCATGAATG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CTGAAAATAAATGAAGGAATCCAGAAAAGCAAGAGTCAAAGAAGGCATCTGCAGGCCAAATCTCTGATCAACCC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CTGACCCACATACACACAAAATACACTCAAAGCAGCTCAGCTAAAGACAAAGATCTGCACTCAGAGTAGAGCTG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CCTCCCCAGAAACAGAGCTCGCAGTTCAGGCCCAGCAAGAAAATTACCTGCAAAACAAAGGAAAAACAACACTC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 ATCAGAGAAAAAGAACAGAATCTGGAATCTTCACAACCTAGCATTCATCATATCCAAGATTGAAACCCAAATTA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TGGGACATATTTAAAAACCAGGAAAATGGAACGTAGTCTTAAGAGAAAAGTCAATCAAATCTGACCTGGAGATG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 AATAATATATTGAAACTTAAAAGGCAAGGGTTTTAATTTTTGTTTTCTTGTTTTTTTTCTGTTTGTTTGTTTGT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TTTTGTTTTTGTTTTTTGAGATGGAATCTTGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCAATCTTGGCTCA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 CTGCAGCCTCTGCCTCCTGGGTTCAAGGAATTCTCCTGTCTCAGCCTTCCGAGTAGCTGGGACTACAGGCGCAC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GCCACCACACCCAGCTAATTTTTGTGTTTTTAGTAGAGACAGGGTTTCACCATATTGGTCAGGCTGGTCTTAAA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CTCCTGACCTCAGGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGCATTACAGGCATGAGCCACCGCACCCA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GCCTTGTTTTCTGGGGTTTTGTTGAGATGAGGTCTCACTCTGTCACACAGGCTGGAGTGTAGTGGTGCGATCCC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 AGCTCACTGCAGCTTTAAACTCCTGGGCTCAAGCAATCCTTTTGCCTCAGCTAGCATGCTCAGTTAATTTTTAA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 ATATTTTTTGTAGACATGGGGTCTTGCTATGTTGCCTAGGCTGGTCTTAAACTCCTGGCTTCAAGCAATCCTTC 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CACCTTGGCCTCCCAAAGTGGTAGGATTATAGGTGTAAGCTCTCCTGCCCAGCCGGCAAGGGCTTGAAAGTGTT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 ATGTTATTTTATAGTTTTAGGAGGTTTTGTAGCTCTCTATGATGAAGTTTAAAAATTAAGAAAAAAAGCTTGTT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TTTGATTAATCGAAATCTCAGCACAGAAATGGGACATTTCATCAGAGAAATAGATACAATGAAGAAGAGCCAAA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TGGAAAGCCCCCTTTTTTGGTTGCTCTTTTTCTGCTTTCAAGGTTTATATTAGCTTGACTTAGATGTGCCTTGG 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 AGTGGACTTCGTTATGTCCCTTCTGCTTAGTGTTTGTCTAATATCTTGAATCTGCAAATCTCTGACTTTCATTA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 CAGCTGGGAAGTGTTTGGTTATTATTTCTTTAAATATTTTTTCTACTTGAGTTTCTTCTCTCCCTCTGAGATTT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 CAATTACATGTATGTTTGTTTGATATCATCTAACAAGTCTCTGAGATTTTGTTCATTATGTTCTAAGTCTTTTT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 CCACTCTGTTACTCATTTTGAGTAATTTTGATTGATCTGTCTTAAAATTTACTCTTTCCTTTAACATGTCCACT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TGGCTGTTAACTCCATCTGGTGAATTTTCTACTTAAGAAATTATACTTTTCAGCTGTAGAATTTACATGAAGAA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 GTACATTATCAACTGTAAATGGGCCATGAAAAGTTAAGGTTGAATTTTGTAATTTATAAATCAACTATTAAACA 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 GTGCAGAATAGCTGTAAAGCATCAGGAAAATTAAAATAGAATATATCTTAAAATATTAAGTAATTTTTAAAGGC 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 GGGAAATAAGAAATGAAGAAACAAATGTCAGAGGAGACAAATAGAAAACAAAATAAAACAAAAATGATAGACTC 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 ATACCCAACCATTTCAAAAATTACATTGAACATTTATGAGCTAAACACTCCAATTAAAAGACAGAGATTAATAA 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 TTGTTTTTAAATGGATACAAAAACAATTATAACATCTCACCAAAGAAGATACACAGATGCCAAAAAATTTGAAA 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 AGCTGTTTAATAGTATATGTTATTAGGTAATTACAAATTAAAACAACAATGAGATACCACTACACATCTACTAG 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 AATAGCCAAAATTCAAAATGCTAACAACACCAAATGCTGGTAAGGATGTGGAACAACAGAAACTGTCATTCATT 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 GTTGATGGGAATGCAAAATGGTTTGGCCACTTTGAAAGACAGTTTTGACAGTTTCTTGCAAAACGAAACATACT 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 TTTACCATATGATTCAACAATCTTACTCCTGGGTATTTACCCAAATGAGCTGAAAACTTATGTCCACACAAAAC 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 CCTGCACATGGATGTTTATAGCAACTTTATTCATAATTGCCAAAAGCTGGAAGCAATCAAGATGTCCTTCAGTA 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 GGCAAATGGATAAACCGTGATATATCCAGACAATGGAATATTATTCAGTGTTAAAAAGAAATGAGCTGTCAAGC 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 CATGAAGACATGGAGGAATGTTAAATGCATATTACTAACTGAAAAAAGCCAATTTGAAAGGGCTGTGTACTGGA 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 TGGGTCAAACTATACGACATTCTGGAAAAGGCAAAACCATGGAGACAAAAAGATCAGTAGTTGCCAAGGGTTGG 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 GCAGAGGCAAGGATGAATAGATGAAACATAGAAGATTTTTAAAGGAGTGTAACTATTCTATATGATACTGTCAT 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 GGTGGCTATATGTACATAAATACATTAGACATTTGTCAAAACTCATAGAATGTATAATACCAAGAGCAAACTCT 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 AATGTAAACTACGGACTTTGGATAATAATGATACATCAGTGTAGGTTCATTGATTGTAGCAAATGCACCACTCT 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 GGTATGGGATGTTGATAGTGGGGAGGCCATATGTGTAGGGGTAGGGGGTGTGTGGGAACTGTCTGTACTTTCAT 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 CTCAATTTAGCTGTGAATCTAAAACTGCTCTAAAAAAATAAAATCCATTTTTTAAAAACCTAAATATAAACTAT 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 GTGCAAAGACATACTTTCAATATAAAGACAGAAGGAAACCAAATATAGATGGATAGAAAAAGATATATCATGTA 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 AATAGTAAGCACAAGAAAGCTGGAGTGGCTACATTAGTATCAAATAAAAATAGATTTCTAAAAAAAAGTATCAT 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 AAAAGATAAAGAAGGGCACTTTAGAAGAAGAAAAGGAATAATTGATCAAGATGACATAAAATTTACAAATTTAT 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 TTGTGCCTAATAATAGTCTCAAATTACATAAGGCAAAAACTGATAGAATGAAAGGAAGAAATAGGCAATTATAA 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 TTGGAAATTTTAATGTCTCTCAGAAGTTGATAGAGTAACCAACAAAAAATCAGCAGACAGAAAACCTGAACAAC 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 ATTATCAGTCACTTTGACCTAATTAATATTTTTAGAACATTTCACTCAGCAATAGCAAAATGCACATTCTTTTC 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 AAGTGCACATGGAATGCTTACCAAGATAGACCACATTCTGGACCATAAAAAAGTTTTAATAAATATTAAAAAGG 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 TTGAAATCAAATAGTTTGTTCTCTGACCACAATGAAATTAAATTGGAAACCAAAAACAATAAGATAACTAGGAA 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 AACCCCAAGCATTTGGAAACTAAGCAACACACTTCTAAATATTTATTGGGCTAAAGACTAAATCACAAGAGAGA 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 TTGAAAATATTTTGCCCTGATGATAATATAAATACACATTTCAAAATTTGTGCAATGTAGCTAACATAGCACTT 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 TGAGGGAAATTTACAGTTTTGAAAGCCTATACGAAGTGGGGAAAGTTCTTAAATCAATGATCTTAATTTTCACT 4070
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4071 GTTAAAAAATAGAAAAAAAAGAGTAAATTGAACTCAAAGCAAGCAGAGGAAGAAAATAATAAAGATAATGACAG 4144
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4145 ACATCAATGAATTAGAGAACGAAAAAAAGAGATAAAAAAATCATTAAAAGCAAAAAGCAGTCCTTTGAAAAAAC 4218
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4219 TAATAAAATTGATAAATCTCAAGACTGACTGGCAAAGAAAAAAAAATGAACAATATCAAGAATGAGAGAAGGGA 4292
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4293 CATTATTACTTTGGATATTAAAAGAATAACAATTCTCTATTGTTATGAACAACTTTATGACATTAAATGTGTCA 4366
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4367 CAGATGAAATGAACACATTCTGGGAAATACATAAATTATAAATCTAATCAAAGATGAAATAGAAAGCTTGAACA 4440
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4441 GCCCTGTATCAATTAAAGATATTGAATTTGTAATTAAAAACTTACTGAGAGAATTCTGGGTTTAGATGCTTCAT 4514
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4515 TGATGAATTCTGACAAACATTTATGAAAAAATAATACCAATCCTACAAAAACTGTTTAAGAAAATAAAGGAGGA 4588
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4589 GGCATGATTTTATGATGCAGTATTATTCTAATTCTACAGCCAGATGAAGACATCTTAAGAAAAAAACTACAGTC 4662
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4663 CAATATCCCTCATGAATATAAATGCAAAAATCCTCAACAAAATATTAGCAAGCCAAATCCAGCAGCATAAAAAA 4736
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4737 GGTTATACACTATGATCAAGGGGCAATGCAAAGTTTTTTTTTGTTTGTTTTGTTTTTTGGGTTTTTTTTGAGAT 4810
Query 1 ----------------------------ATGCAGTGGCGCCATCTCAGCTCACTGCAACCTCCATCTCCCAGGT 46
.||||||||.|..||||||||||||||.||||||...|||||||||
Sbjct 4811 GGAGTCTCAGTCTGTCGCCCAGGCTGGAGTGCAGTGGTGTGATCTCAGCTCACTGTAACCTCTGCCTCCCAGGT 4884
Query 47 TCAAGCGATTCTCGTGCCTCGGCCTCCTGAGTAGCTGGGATTACAGGCGTGTGCCACTACACTCAA-------- 112
|||||||||||||.||||||.||||||||||||||||||||||||||| ||.|.|||
Sbjct 4885 TCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGC----------ACGCACAACCACGCCT 4948
Query 113 --CTAATTTTTGTATTTTTAGGAGAGACGGGGTTTCACCCTGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCA 184
|||||||||||||||||||.||||||.||||||||||.||||||.||.|||||||||||||.||||||||||
Sbjct 4949 GGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGGTCAAGCTGGTCTCGAACGCCTGACCTCA 5022
Query 185 AG------------------------------------------------------------------------ 186
.|
Sbjct 5023 TGATCCACCCACCTCAGTCTCCCATAGTGCTGGGATTACAGGTGTAAGCCACCGCGCCTGGCCAATGCAAAGTT 5096
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5097 GTTTTAACAGCTGACAGTTAATCAATGTAATTCAACAAATTAATAGAATAAAGACAAAAACACAGACACAGTGG 5170
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5171 TGCAATGTAGCTAACATAGTACTTAGAGGGAAATTTATCATTTTGAAAGCCTATAAGAAGGGGGTAAAAGGTCT 5244
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5245 TTTAGTCCTAGCCACTCAGGAGACTGAGGCAGGAGGTTTGTTGGAGACCAGGAGTTCAAGGCTATAGTGCACTA 5318
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5319 TCATTGCACCTGTGAATAGCCACTGCATTCCAGCCTGGGCAACATAGCAAGATCCTGTCTCTTAAAGAAAAAAA 5392
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5393 GGAAGAAGGTGAAAACAATATGATCAGTTCAATAGGTGCAGCAATAGCATTTGTCAAAATTCAACTCCTTTTTA 5466
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5467 TCATTAAAAAATCTTTCAGCAAATTAAGAATAAATTAAAACTTCCTCAACCTGATTAAGGGCATCTACAAAATC 5540
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5541 TGTCAGCTAACATCCTACTACAATGTGAAAAATCAATGCTTTCTACCTAAGACGAGGTAGAGGGCAAGGATGTT 5614
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5615 GGCTCTCATCATTTTTATTTAACTTAAATTGTATAGGAGTGCCTAGTCAGTGCAACAAAGCAAGGGAAAAATAA 5688
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5689 GGCATACATGCTAGAAAGAAATAAGTAAAATTGTCCTTATCTACAAGTGACATTGTATAGAAAACCCTAAGAAA 5762
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5763 CCCACAATAAAAGCTATTAGAGGTACAAGGTTGCAGGATAAAATATACAAAAATCAATTCAAGGTTGCAGGATA 5836
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5837 AAATATACAAAAATCAATTCTGTCTCACATACTAGCAACTAACATTTAGAAAGTTAAGTTATAAGACACTTTGT 5910
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5911 TTACAATAGCATAAAATACTTAGCAAAAGACATGTATGACCTGTAGGCTGAAAACAATAAAACATGACAGGAAG 5984
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5985 ATCTGCATAAATGAACAGCTATACCGTGTTCATGGATTCAAAGTCTCAATATTGTTAAGCTGGCAATCCTTTTT 6058
Query 187 -------------------------------------------------------------------------- 186
Sbjct 6059 GAATTATTCAATAAATTCAATGCAATTCCCACGAAAATCGTAACTTTTTTTTTGAAAAAAATTTGCAAGAGTAT 6132
Query 187 -------------------------------------------------------------------------- 186
Sbjct 6133 TTTAAATTTTATATGGGAAGTCAAAGGACCTAGTATAGCCACATCGTTTTGAAAGAGGAGAACAATATTGGAAC 6206
Query 187 -------------------------------------------------------------------------- 186
Sbjct 6207 ACTTCAGCTACCTGATTTCAAGAACAATATGTGGCTCTGAAGGAATGAACCAATTTTATTCTTTGATCTATAAA 6280
Query 187 -------------------------------------------------------------------------- 186
Sbjct 6281 TTGGCATTTAAATAATTTCCAAATGAGGAGAGATGGGTAGCTCTGAGATAAGCATGTGACTTCCCAAGGTGGCC 6354
Query 187 -------------------------------------------------------------------------- 186
Sbjct 6355 AATTTGAAGGGTAATTCTCCTTTGGGATGATTGCTAAGGGAAAAAAAAAATCCATGTTGAACATAAGGTTTGTA 6428
Query 187 -------------------------------------------------------------------------- 186
Sbjct 6429 ATCAAGACAACTGGATTTAAATATTGGATGCACCATTCAGCTCTCTAAAACTGAGTATCTTCATCTTAAAATGG 6502
Query 187 -------------------------------------------------------------------------- 186
Sbjct 6503 GATGTGCAGTGTAAGGATTAAGGCAGTAAAGTATAGAGGCTAAGCCGTGTGCTATAGCACTGGAGCTATCTTAC 6576
Query 187 -------------------------------------------------------------------------- 186
Sbjct 6577 CCAGGTTTGAATCTAGCTTGGCCATTTTCTAGCTATGTGGCCTTGGGTATGTTTAACCTTACTTTGCTTCATCT 6650
Query 187 -------------------------------------------------------------------------- 186
Sbjct 6651 TGCTCATTTGTACAAGCACTGCTCGTTTTATTGCATTTCACTTTATTGCACTTCACATATATTGCATTTCTTAC 6724
Query 187 -------------------------------------------------------------------------- 186
Sbjct 6725 AAATTGAAAGTTTTTGGCAACCTTGTGTGGGATAAGTCTATTGGTGCCATTTTTCTAACAGCATGTACTCACTT 6798
Query 187 ------------------------------------------------- 186
Sbjct 6799 CATGTCTCTGTGTCAGCATTTTTTAGCAATAAAGTATTTTTTAAATCAA 6847
