Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_15487
- Subject:
- NR_148053.2
- Aligned Length:
- 6958
- Identities:
- 157
- Gaps:
- 6782
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGGAGAGATGCGAAATCAGCGGTAGCAGGTGGCGCAGAAGGGAGAGGGGAGCGACCCTGGGGACCGACTCTGGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GACCCTCGCCGAAGAGTCCCAAGGGTTCCAAGGCCAGAGAGAGGTCCTGGTCTTGATTGCTGGCATGTTTACTC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TTCCAAGTACACTGAGATCAAATGCAAAGACAAACCATCAAAGAAAATAACTCTAAAATCTGGACATGATATAC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AAAGTGACTGCCTAAAGGAGCTGAAGAGAGGACATAAGTGGATCGCCTCTGCTGTTGCATGTTGGCTTGGAGAA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CAGAAGATGAGGAGCCAAATAAGCAAGTCCTTCAGCCCCAGGCTTCTAGCACGGGGCTGCATGTAGGCTATGCA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TTCTGGGGAGTGAGGAGATCATGAATGCTGAAAATAAATGAAGGAATCCAGAAAAGCAAGAGTCAAAGAAGGCA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TCTGCAGGCCAAATCTCTGATCAACCCCTGACCCACATACACACAAAATACACTCAAAGCAGCTCAGCTAAAGA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CAAAGATCTGCACTCAGAGTAGAGCTGCCTCCCCAGAAACAGAGCTCGCAGTTCAGGCCCAGCAAGAAAATTAC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CTGCAAAACAAAGGAAAAACAACACTCATCAGAGAAAAAGAACAGAATCTGGAATCTTCACAACCTAGCATTCA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TCATATCCAAGATTGAAACCCAAATTATGGGACATATTTAAAAACCAGGAAAATGGAACGTAGTCTTAAGAGAA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AAGTCAATCAAATCTGACCTGGAGATGAATAATATATTGAAACTTAAAAGGCAAGGGTTTTAATTTTTGTTTTC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TTGTTTTTTTTCTGTTTGTTTGTTTGTTTTTGTTTTTGTTTTTTGAGATGGAATCTTGCTCTGTCGCCCAGGCT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GGAGTGCAGTGGCGCAATCTTGGCTCACTGCAGCCTCTGCCTCCTGGGTTCAAGGAATTCTCCTGTCTCAGCCT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TCCGAGTAGCTGGGACTACAGGCGCACGCCACCACACCCAGCTAATTTTTGTGTTTTTAGTAGAGACAGGGTTT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 CACCATATTGGTCAGGCTGGTCTTAAACTCCTGACCTCAGGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 CATTACAGGCATGAGCCACCGCACCCAGCCTTGTTTTCTGGGGTTTTGTTGAGATGAGGTCTCACTCTGTCACA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CAGGCTGGAGTGTAGTGGTGCGATCCCAGCTCACTGCAGCTTTAAACTCCTGGGCTCAAGCAATCCTTTTGCCT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CAGCTAGCATGCTCAGTTAATTTTTAAATATTTTTTGTAGACATGGGGTCTTGCTATGTTGCCTAGGCTGGTCT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TAAACTCCTGGCTTCAAGCAATCCTTCCACCTTGGCCTCCCAAAGTGGTAGGATTATAGGTGTAAGCTCTCCTG 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CCCAGCCGGCAAGGGCTTGAAAGTGTTATGTTATTTTATAGTTTTAGGAGGTTTTGTAGCTCTCTATGATGAAG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TTTAAAAATTAAGAAAAAAAGCTTGTTTTTGATTAATCGAAATCTCAGCACAGAAATGGGACATTTCATCAGAG 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 AAATAGATACAATGAAGAAGAGCCAAATGGAAAGCCCCCTTTTTTGGTTGCTCTTTTTCTGCTTTCAAGGTTTA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TATTAGCTTGACTTAGATGTGCCTTGGAGTGGACTTCGTTATGTCCCTTCTGCTTAGTGTTTGTCTAATATCTT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 GAATCTGCAAATCTCTGACTTTCATTACAGCTGGGAAGTGTTTGGTTATTATTTCTTTAAATATTTTTTCTACT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TGAGTTTCTTCTCTCCCTCTGAGATTTCAATTACATGTATGTTTGTTTGATATCATCTAACAAGTCTCTGAGAT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TTTGTTCATTATGTTCTAAGTCTTTTTCCACTCTGTTACTCATTTTGAGTAATTTTGATTGATCTGTCTTAAAA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TTTACTCTTTCCTTTAACATGTCCACTTGGCTGTTAACTCCATCTGGTGAATTTTCTACTTAAGAAATTATACT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TTTCAGCTGTAGAATTTACATGAAGAAGTACATTATCAACTGTAAATGGGCCATGAAAAGTTAAGGTTGAATTT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 TGTAATTTATAAATCAACTATTAAACAGTGCAGAATAGCTGTAAAGCATCAGGAAAATTAAAATAGAATATATC 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 TTAAAATATTAAGTAATTTTTAAAGGCGGGAAATAAGAAATGAAGAAACAAATGTCAGAGGAGACAAATAGAAA 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 ACAAAATAAAACAAAAATGATAGACTCATACCCAACCATTTCAAAAATTACATTGAACATTTATGAGCTAAACA 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 CTCCAATTAAAAGACAGAGATTAATAATTGTTTTTAAATGGATACAAAAACAATTATAACATCTCACCAAAGAA 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 GATACACAGATGCCAAAAAATTTGAAAAGCTGTTTAATAGTATATGTTATTAGGTAATTACAAATTAAAACAAC 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 AATGAGATACCACTACACATCTACTAGAATAGCCAAAATTCAAAATGCTAACAACACCAAATGCTGGTAAGGAT 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 GTGGAACAACAGAAACTGTCATTCATTGTTGATGGGAATGCAAAATGGTTTGGCCACTTTGAAAGACAGTTTTG 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 ACAGTTTCTTGCAAAACGAAACATACTTTTACCATATGATTCAACAATCTTACTCCTGGGTATTTACCCAAATG 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 AGCTGAAAACTTATGTCCACACAAAACCCTGCACATGGATGTTTATAGCAACTTTATTCATAATTGCCAAAAGC 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 TGGAAGCAATCAAGATGTCCTTCAGTAGGCAAATGGATAAACCGTGATATATCCAGACAATGGAATATTATTCA 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 GTGTTAAAAAGAAATGAGCTGTCAAGCCATGAAGACATGGAGGAATGTTAAATGCATATTACTAACTGAAAAAA 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 GCCAATTTGAAAGGGCTGTGTACTGGATGGGTCAAACTATACGACATTCTGGAAAAGGCAAAACCATGGAGACA 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 AAAAGATCAGTAGTTGCCAAGGGTTGGGCAGAGGCAAGGATGAATAGATGAAACATAGAAGATTTTTAAAGGAG 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 TGTAACTATTCTATATGATACTGTCATGGTGGCTATATGTACATAAATACATTAGACATTTGTCAAAACTCATA 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 GAATGTATAATACCAAGAGCAAACTCTAATGTAAACTACGGACTTTGGATAATAATGATACATCAGTGTAGGTT 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 CATTGATTGTAGCAAATGCACCACTCTGGTATGGGATGTTGATAGTGGGGAGGCCATATGTGTAGGGGTAGGGG 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 GTGTGTGGGAACTGTCTGTACTTTCATCTCAATTTAGCTGTGAATCTAAAACTGCTCTAAAAAAATAAAATCCA 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 TTTTTTAAAAACCTAAATATAAACTATGTGCAAAGACATACTTTCAATATAAAGACAGAAGGAAACCAAATATA 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 GATGGATAGAAAAAGATATATCATGTAAATAGTAAGCACAAGAAAGCTGGAGTGGCTACATTAGTATCAAATAA 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 AAATAGATTTCTAAAAAAAAGTATCATAAAAGATAAAGAAGGGCACTTTAGAAGAAGAAAAGGAATAATTGATC 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 AAGATGACATAAAATTTACAAATTTATTTGTGCCTAATAATAGTCTCAAATTACATAAGGCAAAAACTGATAGA 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 ATGAAAGGAAGAAATAGGCAATTATAATTGGAAATTTTAATGTCTCTCAGAAGTTGATAGAGTAACCAACAAAA 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 AATCAGCAGACAGAAAACCTGAACAACATTATCAGTCACTTTGACCTAATTAATATTTTTAGAACATTTCACTC 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 AGCAATAGCAAAATGCACATTCTTTTCAAGTGCACATGGAATGCTTACCAAGATAGACCACATTCTGGACCATA 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 AAAAAGTTTTAATAAATATTAAAAAGGTTGAAATCAAATAGTTTGTTCTCTGACCACAATGAAATTAAATTGGA 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 AACCAAAAACAATAAGATAACTAGGAAAACCCCAAGCATTTGGAAACTAAGCAACACACTTCTAAATATTTATT 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 GGGCTAAAGACTAAATCACAAGAGAGATTGAAAATATTTTGCCCTGATGATAATATAAATACACATTTCAAAAT 4070
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4071 TTGTGCAATGTAGCTAACATAGCACTTTGAGGGAAATTTACAGTTTTGAAAGCCTATACGAAGTGGGGAAAGTT 4144
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4145 CTTAAATCAATGATCTTAATTTTCACTGTTAAAAAATAGAAAAAAAAGAGTAAATTGAACTCAAAGCAAGCAGA 4218
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4219 GGAAGAAAATAATAAAGATAATGACAGACATCAATGAATTAGAGAACGAAAAAAAGAGATAAAAAAATCATTAA 4292
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4293 AAGCAAAAAGCAGTCCTTTGAAAAAACTAATAAAATTGATAAATCTCAAGACTGACTGGCAAAGAAAAAAAAAT 4366
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4367 GAACAATATCAAGAATGAGAGAAGGGACATTATTACTTTGGATATTAAAAGAATAACAATTCTCTATTGTTATG 4440
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4441 AACAACTTTATGACATTAAATGTGTCACAGATGAAATGAACACATTCTGGGAAATACATAAATTATAAATCTAA 4514
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4515 TCAAAGATGAAATAGAAAGCTTGAACAGCCCTGTATCAATTAAAGATATTGAATTTGTAATTAAAAACTTACTG 4588
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4589 AGAGAATTCTGGGTTTAGATGCTTCATTGATGAATTCTGACAAACATTTATGAAAAAATAATACCAATCCTACA 4662
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4663 AAAACTGTTTAAGAAAATAAAGGAGGAGGCATGATTTTATGATGCAGTATTATTCTAATTCTACAGCCAGATGA 4736
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4737 AGACATCTTAAGAAAAAAACTACAGTCCAATATCCCTCATGAATATAAATGCAAAAATCCTCAACAAAATATTA 4810
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4811 GCAAGCCAAATCCAGCAGCATAAAAAAGGTTATACACTATGATCAAGGGGCAATGCAAAGTTTTTTTTTGTTTG 4884
Query 1 -------------------------------------------------------ATGCAGTGGCGCCATCTCA 19
.||||||||.|..||||||
Sbjct 4885 TTTTGTTTTTTGGGTTTTTTTTGAGATGGAGTCTCAGTCTGTCGCCCAGGCTGGAGTGCAGTGGTGTGATCTCA 4958
Query 20 GCTCACTGCAACCTCCATCTCCCAGGTTCAAGCGATTCTCGTGCCTCGGCCTCCTGAGTAGCTGGGATTACAGG 93
||||||||.||||||...||||||||||||||||||||||.||||||.||||||||||||||||||||||||||
Sbjct 4959 GCTCACTGTAACCTCTGCCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGG 5032
Query 94 CGTGTGCCACTACACTCAA----------CTAATTTTTGTATTTTTAGGAGAGACGGGGTTTCACCCTGTTGGC 157
| ||.|.||| |||||||||||||||||||.||||||.||||||||||.||||||.
Sbjct 5033 C----------ACGCACAACCACGCCTGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGGT 5096
Query 158 CAGGCTGGTCTCGAACTCCTGACCTCAAG--------------------------------------------- 186
||.|||||||||||||.||||||||||.|
Sbjct 5097 CAAGCTGGTCTCGAACGCCTGACCTCATGATCCACCCACCTCAGTCTCCCATAGTGCTGGGATTACAGGTGTAA 5170
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5171 GCCACCGCGCCTGGCCAATGCAAAGTTGTTTTAACAGCTGACAGTTAATCAATGTAATTCAACAAATTAATAGA 5244
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5245 ATAAAGACAAAAACACAGACACAGTGGTGCAATGTAGCTAACATAGTACTTAGAGGGAAATTTATCATTTTGAA 5318
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5319 AGCCTATAAGAAGGGGGTAAAAGGTCTTTTAGTCCTAGCCACTCAGGAGACTGAGGCAGGAGGTTTGTTGGAGA 5392
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5393 CCAGGAGTTCAAGGCTATAGTGCACTATCATTGCACCTGTGAATAGCCACTGCATTCCAGCCTGGGCAACATAG 5466
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5467 CAAGATCCTGTCTCTTAAAGAAAAAAAGGAAGAAGGTGAAAACAATATGATCAGTTCAATAGGTGCAGCAATAG 5540
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5541 CATTTGTCAAAATTCAACTCCTTTTTATCATTAAAAAATCTTTCAGCAAATTAAGAATAAATTAAAACTTCCTC 5614
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5615 AACCTGATTAAGGGCATCTACAAAATCTGTCAGCTAACATCCTACTACAATGTGAAAAATCAATGCTTTCTACC 5688
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5689 TAAGACGAGGTAGAGGGCAAGGATGTTGGCTCTCATCATTTTTATTTAACTTAAATTGTATAGGAGTGCCTAGT 5762
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5763 CAGTGCAACAAAGCAAGGGAAAAATAAGGCATACATGCTAGAAAGAAATAAGTAAAATTGTCCTTATCTACAAG 5836
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5837 TGACATTGTATAGAAAACCCTAAGAAACCCACAATAAAAGCTATTAGAGGTACAAGGTTGCAGGATAAAATATA 5910
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5911 CAAAAATCAATTCAAGGTTGCAGGATAAAATATACAAAAATCAATTCTGTCTCACATACTAGCAACTAACATTT 5984
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5985 AGAAAGTTAAGTTATAAGACACTTTGTTTACAATAGCATAAAATACTTAGCAAAAGACATGTATGACCTGTAGG 6058
Query 187 -------------------------------------------------------------------------- 186
Sbjct 6059 CTGAAAACAATAAAACATGACAGGAAGATCTGCATAAATGAACAGCTATACCGTGTTCATGGATTCAAAGTCTC 6132
Query 187 -------------------------------------------------------------------------- 186
Sbjct 6133 AATATTGTTAAGCTGGCAATCCTTTTTGAATTATTCAATAAATTCAATGCAATTCCCACGAAAATCGTAACTTT 6206
Query 187 -------------------------------------------------------------------------- 186
Sbjct 6207 TTTTTTGAAAAAAATTTGCAAGAGTATTTTAAATTTTATATGGGAAGTCAAAGGACCTAGTATAGCCACATCGT 6280
Query 187 -------------------------------------------------------------------------- 186
Sbjct 6281 TTTGAAAGAGGAGAACAATATTGGAACACTTCAGCTACCTGATTTCAAGAACAATATGTGGCTCTGAAGGAATG 6354
Query 187 -------------------------------------------------------------------------- 186
Sbjct 6355 AACCAATTTTATTCTTTGATCTATAAATTGGCATTTAAATAATTTCCAAATGAGGAGAGATGGGTAGCTCTGAG 6428
Query 187 -------------------------------------------------------------------------- 186
Sbjct 6429 ATAAGCATGTGACTTCCCAAGGTGGCCAATTTGAAGGGTAATTCTCCTTTGGGATGATTGCTAAGGGAAAAAAA 6502
Query 187 -------------------------------------------------------------------------- 186
Sbjct 6503 AAATCCATGTTGAACATAAGGTTTGTAATCAAGACAACTGGATTTAAATATTGGATGCACCATTCAGCTCTCTA 6576
Query 187 -------------------------------------------------------------------------- 186
Sbjct 6577 AAACTGAGTATCTTCATCTTAAAATGGGATGTGCAGTGTAAGGATTAAGGCAGTAAAGTATAGAGGCTAAGCCG 6650
Query 187 -------------------------------------------------------------------------- 186
Sbjct 6651 TGTGCTATAGCACTGGAGCTATCTTACCCAGGTTTGAATCTAGCTTGGCCATTTTCTAGCTATGTGGCCTTGGG 6724
Query 187 -------------------------------------------------------------------------- 186
Sbjct 6725 TATGTTTAACCTTACTTTGCTTCATCTTGCTCATTTGTACAAGCACTGCTCGTTTTATTGCATTTCACTTTATT 6798
Query 187 -------------------------------------------------------------------------- 186
Sbjct 6799 GCACTTCACATATATTGCATTTCTTACAAATTGAAAGTTTTTGGCAACCTTGTGTGGGATAAGTCTATTGGTGC 6872
Query 187 -------------------------------------------------------------------------- 186
Sbjct 6873 CATTTTTCTAACAGCATGTACTCACTTCATGTCTCTGTGTCAGCATTTTTTAGCAATAAAGTATTTTTTAAATC 6946
Query 187 -- 186
Sbjct 6947 AA 6948
