Nucleotide Global Alignment

Description

Query:
ccsbBroad304_15487
Subject:
XR_001737207.1
Aligned Length:
3909
Identities:
161
Gaps:
3725

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GGGGGGCGGGGCGGCAGAGCTCGGCGGCTGGGACTGGAGGACAGCGGTGGCGGAGGCGACTAGCGGCGGCGGGA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GCGGCGCCGAGAGGCCGTGCGGGACGCGGGCGCCAGGACCGGCCGAACGCAGAGAAGGTAGAAGATAGCACCAT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GCCGATTCGTCGAACTGTGAATTCTACCCGGGAAACTCCTCCCAAAAGCAAGCTTGCTGAAGGGGAGGAAGAAA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  AGCCAGAACCAGACATAAGTTCAGAGGAATCTGTCTCCACTGTAGAAGAACAAGAGAATGAAACTCCACCTGCT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  ACTTCGAGTGAGGCAGAGCAGCCAAAGGGGGAACCTGAGAATGAAGAGAAGGAAGAAAATAAGTCTTCTGAGGA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  AACCAAAAAGGATGAGAAAGATCAGTCTAAAGAAAAGGAGAAGAAAGTGAAAAAAACAATTCCTTCCTGGGCTA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CCCTTTCTGCCAGCCAGCTAGCCAGGGCCCAGAAACAAACACCGATGGCTTCTTCCCCACGTCCCAAGATGGAT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GCAATCTTAACTGAGGCCATTAAGGCATGCTTCCAGAAGAGTGGTGCATCAGTGGTTGCTATTCGAAAATACAT  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CATCCATAAGTATCCTTCTCTGGAGCTGGAGAGAAGGGGTTATCTCCTTAAACAAGCACTGAAAAGAGAATTAA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  ATAGAGGAGTCATCAAACAGGTTAAAGGAAAAGGTGCTTCTGGAAGTTTTGTTGTGGTTCAGAAATCAAGAAAA  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  ACACCTCAGAAATCCAGAAACAGAAAGAATAGGAGCTCTGCAGTGGATCCAGAACCACAAGTAAAATTGGAGGA  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  TGTCCTCCCACTGGCCTTTACTCGCCTTTGTGAACCTAAAGAAGCTTCCTACAGTCTCATCAGGAAATATGTGT  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  CTCAGTATTATCCTAAGCTTAGAGTGGACATCAGGCCTCAGCTGTTGAAGAACGCTCTGCAGAGAGCAGTAGAG  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  AGGGGCCAGTTAGAACAGATAACTGGCAAAGGTGCTTCGGGGACATTCCAGGAACTCCGACCCACCTGGTGCAG  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  AGGAGTCTTGTCTTGACCTGCTTTGGGAGAGTGTTGTCTTGATGCTTTTCTCTTCCTCCTTGGAAAACAGCTGA  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  AGAAATCAGGGGAGAAACCCCTGCTTGGTGGAAGCCTGATGGAATATGCAATCTTGTCTGCCATTGCTGCCATG  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  AATGAGCCGAAGACCTGCTCTACCACTGCTCTGAAGAAGTATGTCCTAGAGAATCACCCAGGAACCAATTCTAA  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  CTATCAAATGCATTTGCTGAAAAAAACCCTGCAGAAATGCGAAAAGAATGGGTGGATGGAACAGATCTCTGGGA  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  AAGGGTTCAGTGGCACCTTCCAGCTCTGTTTTCCCTATTATCCCAGCCCAGGAGTTCTGTTTCCGAAGAAAGAG  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  CCAGATGATTCTAGAGATGAGGATGAAGATGAAGATGAGTCATCAGAAGAAGACTCTGAGGATGAAGAGCCGCC  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  ACCTAAGAGAAGGTTGCAGAAGAAAACCCCAGCCAAGTCCCCAGGGAAGGCCGCATCTGTGAAGCAGAGAGGGT  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  CCAAACCTGCACCTAAAGTCTCAGCTGCCCAGCGGGGGAAAGCTAGGCCCTTGCCTAAGAAAGCACCTCCTAAG  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  GCCAAAACGCCTGCCAAGAAGACCAGACCCTCATCCACAGTCATCAAGAAACCTAGTGGTGGCTCCTCAAAGAA  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  GCCTGCAACCAGTGCAAGAAAGGAAGTAAAATTGCCGGGCAAGGGCAAATCCACCATGAAGAAGTCTTTCAGAG  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  TGAAAAAGTAAATTTTATAGGAAAAAAGGGTATCATGATGAAATTCAAAATCTTATTTTCTAAGGTCAGTGTGC  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  ATTTGTTTAGTTTTGATGCTTTTCAAATTACATTATTTTCCTCCCCTATGAACATTGTGGGGAGGGACTCTAAA  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  TAAACCAGTTTAGGCATTTGCTAGCTTTAGGTGCTTTTATTGGTGCCTGCCCTTTTCCTTGTTCATTTTAATTT  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  CTGCAATAATCCTGGACTTTCCTAAACTATGTAATGTATACTTGTCCTTTTTCTCTGCCTCCCCCAACCCCCTG  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  TTGTTTTTATGGTCAGCTTTGCCTTTTTTTTTTCTTCCAATTTTATCTAAACAGTTGCAGAGATTTTTATATTT  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  GTAGAAAGCATCAAGAACGGTATGCCAGTCAGGTCCTGGAAGTAAAATGGAGGCACAATATAGCACTGACTGAG  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  TTGTAAAGCCTCCTGCCTGGAGACTTCAGTTATAGCTGTAATAATTAATCTTATTTATAAAAGCCACTCCACTA  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  ACCTTTTCTCTCCAACTGTAAACACAGAGACAGCTTTGGGAATAAGCCAAAAACAGGGTGATCTCATTAGATTT  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  TGAAGATATATGACTCCTTTGGGCTACATTTCATATTGATCAATTTCTAGGTATTTTTCACTGGCCCAAAGTAT  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  TGCATTCCCTTAACAGCAAGCACAAGTTCTCTATATCACTTGTTTTTTGTTGTTGTTGTTGTTGTCGTCGTTGT  2516

Query    1  --------------------------------ATGCAGTGGCGCCATCTCAGCTCACTGCAACCTCCATCTCCC  42
                                            .||||||||.||.|||||||||||||||||||||||.||||.
Sbjct 2517  TTTGAGACGGAGTCTTGCTCAGGTGCCCCGGAGTGCAGTGGTGCAATCTCAGCTCACTGCAACCTCCACCTCCT  2590

Query   43  AGGTTCAAGCGATTCTCGTGCCTCGGCCTCCTGAGTAGCTGGGATTACAGGCGTGTGCCACTACAC---TCAAC  113
            .|||||||||.||||||.|||.||.||||||.|||||||||||||||||||.||||.||||.||.|   .|||.
Sbjct 2591  GGGTTCAAGCAATTCTCCTGCTTCAGCCTCCCGAGTAGCTGGGATTACAGGTGTGTACCACCACGCCTGGCAAT  2664

Query  114  TAATTTTTGTATTTTTAGGAGAGACGGGGTTTCACCCTGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG-  186
            |  |||||||||||||||.|||||.||||||||.||.||||||.|||||||||||||||||||||||||||.| 
Sbjct 2665  T--TTTTTGTATTTTTAGTAGAGATGGGGTTTCGCCGTGTTGGTCAGGCTGGTCTCGAACTCCTGACCTCAGGT  2736

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2737  GATCCGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGAGTGAGCCACTGTGCCTGGCCTATCCCACTTGG  2810

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2811  TTTTTGACTGAAGGGGAAGTGTAGAAATATATTGATTTGTGATTTCTGGTGTCACCTGTGTTACCAAAAATCAA  2884

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2885  AACAAATCTTTTTTATTTTTTATTATTATTATTATTTTTGAGACAGAGTCTCGCTCTGTCGCCCAGTGTGGAGT  2958

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2959  GCAGTGGTGTGATCTTGGCTCACTGCAAACTCCGCCTCCCAGGTTCAAGCGATTCTCCCACCTCAGCCTCCTGA  3032

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3033  GTTGGGTCCTACAGGCGCACACGACCACGCCCAGCTAATTTTTTGTATTTTTAGTAGAGTTGGGGTTTCACCAT  3106

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3107  GTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCACTCACCTCAGCCTCCCAAAATCCTGGGGTTACAG  3180

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3181  ATGTGAGCTACCACTCACGGCCCAAATCTTCTTGATCATATGTTTAAATATATTTTTTAATATTTGGAGCATGA  3254

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3255  GTTGTCACTTCTTGTTTGCCTTTTTTATAAGGAAATGTTGGAGAGTTACATCATTGCTAATGTAGAAATGTTAA  3328

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3329  GTGGAAAAATATACAGTTTGGTAAAATAAACTAGATTCTACATTTATTTGTGGGTTTTTTTCCCCTCCTTTCTT  3402

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3403  TCCACAGCACTTTTGATATCAAGCAAGTGGCTTCCTTTTTGAGATATTAAAAAAAAAAAGAAAAGGAAAAAAGT  3476

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3477  AAATGAAGCCCAACTACCTAACCCTTTCTTATTTGTATTTGTTTTAGTATTGTGAAGTTGTGTTAAATAGTACT  3550

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3551  AGCTAGAAATACAAATTTCTGGTTATCATTTCTCTTCCCTGTGGCACTTGACATTTTAATTGTCTTAAAGTTTT  3624

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3625  TGAAGTACATCTTCTGGCCCCTTGAGTACTGCCAGAGGCAAAAGATGTTTGTTTCTTATTCATTCCACTTTTGT  3698

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3699  CTCCTGGGATCCCTTCTGTAGCCTAAAGTATGGCTGGGAAATGGACTTGAGAAGATTGGCTTGAATTAGATCAT  3772

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3773  AATCATGTGTGATCCCATCATGAATTCATTGGAATTTGTGTTGCATGTAAGGCAATCTTTCCTGTTGTAAATCT  3846

Query  187  -------------------------------------------------------------  186
                                                                         
Sbjct 3847  TCCTTTTTTAATGTACATATATTTTGAAAAATATGAATAAACATGAAATTTTAAAAGCTGC  3907

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