Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_15487
- Subject:
- XR_001737207.1
- Aligned Length:
- 3909
- Identities:
- 161
- Gaps:
- 3725
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GGGGGGCGGGGCGGCAGAGCTCGGCGGCTGGGACTGGAGGACAGCGGTGGCGGAGGCGACTAGCGGCGGCGGGA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GCGGCGCCGAGAGGCCGTGCGGGACGCGGGCGCCAGGACCGGCCGAACGCAGAGAAGGTAGAAGATAGCACCAT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GCCGATTCGTCGAACTGTGAATTCTACCCGGGAAACTCCTCCCAAAAGCAAGCTTGCTGAAGGGGAGGAAGAAA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AGCCAGAACCAGACATAAGTTCAGAGGAATCTGTCTCCACTGTAGAAGAACAAGAGAATGAAACTCCACCTGCT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 ACTTCGAGTGAGGCAGAGCAGCCAAAGGGGGAACCTGAGAATGAAGAGAAGGAAGAAAATAAGTCTTCTGAGGA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AACCAAAAAGGATGAGAAAGATCAGTCTAAAGAAAAGGAGAAGAAAGTGAAAAAAACAATTCCTTCCTGGGCTA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CCCTTTCTGCCAGCCAGCTAGCCAGGGCCCAGAAACAAACACCGATGGCTTCTTCCCCACGTCCCAAGATGGAT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GCAATCTTAACTGAGGCCATTAAGGCATGCTTCCAGAAGAGTGGTGCATCAGTGGTTGCTATTCGAAAATACAT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CATCCATAAGTATCCTTCTCTGGAGCTGGAGAGAAGGGGTTATCTCCTTAAACAAGCACTGAAAAGAGAATTAA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 ATAGAGGAGTCATCAAACAGGTTAAAGGAAAAGGTGCTTCTGGAAGTTTTGTTGTGGTTCAGAAATCAAGAAAA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 ACACCTCAGAAATCCAGAAACAGAAAGAATAGGAGCTCTGCAGTGGATCCAGAACCACAAGTAAAATTGGAGGA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TGTCCTCCCACTGGCCTTTACTCGCCTTTGTGAACCTAAAGAAGCTTCCTACAGTCTCATCAGGAAATATGTGT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CTCAGTATTATCCTAAGCTTAGAGTGGACATCAGGCCTCAGCTGTTGAAGAACGCTCTGCAGAGAGCAGTAGAG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AGGGGCCAGTTAGAACAGATAACTGGCAAAGGTGCTTCGGGGACATTCCAGGAACTCCGACCCACCTGGTGCAG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 AGGAGTCTTGTCTTGACCTGCTTTGGGAGAGTGTTGTCTTGATGCTTTTCTCTTCCTCCTTGGAAAACAGCTGA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 AGAAATCAGGGGAGAAACCCCTGCTTGGTGGAAGCCTGATGGAATATGCAATCTTGTCTGCCATTGCTGCCATG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 AATGAGCCGAAGACCTGCTCTACCACTGCTCTGAAGAAGTATGTCCTAGAGAATCACCCAGGAACCAATTCTAA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CTATCAAATGCATTTGCTGAAAAAAACCCTGCAGAAATGCGAAAAGAATGGGTGGATGGAACAGATCTCTGGGA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 AAGGGTTCAGTGGCACCTTCCAGCTCTGTTTTCCCTATTATCCCAGCCCAGGAGTTCTGTTTCCGAAGAAAGAG 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CCAGATGATTCTAGAGATGAGGATGAAGATGAAGATGAGTCATCAGAAGAAGACTCTGAGGATGAAGAGCCGCC 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 ACCTAAGAGAAGGTTGCAGAAGAAAACCCCAGCCAAGTCCCCAGGGAAGGCCGCATCTGTGAAGCAGAGAGGGT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 CCAAACCTGCACCTAAAGTCTCAGCTGCCCAGCGGGGGAAAGCTAGGCCCTTGCCTAAGAAAGCACCTCCTAAG 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 GCCAAAACGCCTGCCAAGAAGACCAGACCCTCATCCACAGTCATCAAGAAACCTAGTGGTGGCTCCTCAAAGAA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 GCCTGCAACCAGTGCAAGAAAGGAAGTAAAATTGCCGGGCAAGGGCAAATCCACCATGAAGAAGTCTTTCAGAG 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TGAAAAAGTAAATTTTATAGGAAAAAAGGGTATCATGATGAAATTCAAAATCTTATTTTCTAAGGTCAGTGTGC 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 ATTTGTTTAGTTTTGATGCTTTTCAAATTACATTATTTTCCTCCCCTATGAACATTGTGGGGAGGGACTCTAAA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TAAACCAGTTTAGGCATTTGCTAGCTTTAGGTGCTTTTATTGGTGCCTGCCCTTTTCCTTGTTCATTTTAATTT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 CTGCAATAATCCTGGACTTTCCTAAACTATGTAATGTATACTTGTCCTTTTTCTCTGCCTCCCCCAACCCCCTG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 TTGTTTTTATGGTCAGCTTTGCCTTTTTTTTTTCTTCCAATTTTATCTAAACAGTTGCAGAGATTTTTATATTT 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 GTAGAAAGCATCAAGAACGGTATGCCAGTCAGGTCCTGGAAGTAAAATGGAGGCACAATATAGCACTGACTGAG 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 TTGTAAAGCCTCCTGCCTGGAGACTTCAGTTATAGCTGTAATAATTAATCTTATTTATAAAAGCCACTCCACTA 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 ACCTTTTCTCTCCAACTGTAAACACAGAGACAGCTTTGGGAATAAGCCAAAAACAGGGTGATCTCATTAGATTT 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 TGAAGATATATGACTCCTTTGGGCTACATTTCATATTGATCAATTTCTAGGTATTTTTCACTGGCCCAAAGTAT 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 TGCATTCCCTTAACAGCAAGCACAAGTTCTCTATATCACTTGTTTTTTGTTGTTGTTGTTGTTGTCGTCGTTGT 2516
Query 1 --------------------------------ATGCAGTGGCGCCATCTCAGCTCACTGCAACCTCCATCTCCC 42
.||||||||.||.|||||||||||||||||||||||.||||.
Sbjct 2517 TTTGAGACGGAGTCTTGCTCAGGTGCCCCGGAGTGCAGTGGTGCAATCTCAGCTCACTGCAACCTCCACCTCCT 2590
Query 43 AGGTTCAAGCGATTCTCGTGCCTCGGCCTCCTGAGTAGCTGGGATTACAGGCGTGTGCCACTACAC---TCAAC 113
.|||||||||.||||||.|||.||.||||||.|||||||||||||||||||.||||.||||.||.| .|||.
Sbjct 2591 GGGTTCAAGCAATTCTCCTGCTTCAGCCTCCCGAGTAGCTGGGATTACAGGTGTGTACCACCACGCCTGGCAAT 2664
Query 114 TAATTTTTGTATTTTTAGGAGAGACGGGGTTTCACCCTGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG- 186
| |||||||||||||||.|||||.||||||||.||.||||||.|||||||||||||||||||||||||||.|
Sbjct 2665 T--TTTTTGTATTTTTAGTAGAGATGGGGTTTCGCCGTGTTGGTCAGGCTGGTCTCGAACTCCTGACCTCAGGT 2736
Query 187 -------------------------------------------------------------------------- 186
Sbjct 2737 GATCCGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGAGTGAGCCACTGTGCCTGGCCTATCCCACTTGG 2810
Query 187 -------------------------------------------------------------------------- 186
Sbjct 2811 TTTTTGACTGAAGGGGAAGTGTAGAAATATATTGATTTGTGATTTCTGGTGTCACCTGTGTTACCAAAAATCAA 2884
Query 187 -------------------------------------------------------------------------- 186
Sbjct 2885 AACAAATCTTTTTTATTTTTTATTATTATTATTATTTTTGAGACAGAGTCTCGCTCTGTCGCCCAGTGTGGAGT 2958
Query 187 -------------------------------------------------------------------------- 186
Sbjct 2959 GCAGTGGTGTGATCTTGGCTCACTGCAAACTCCGCCTCCCAGGTTCAAGCGATTCTCCCACCTCAGCCTCCTGA 3032
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3033 GTTGGGTCCTACAGGCGCACACGACCACGCCCAGCTAATTTTTTGTATTTTTAGTAGAGTTGGGGTTTCACCAT 3106
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3107 GTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCACTCACCTCAGCCTCCCAAAATCCTGGGGTTACAG 3180
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3181 ATGTGAGCTACCACTCACGGCCCAAATCTTCTTGATCATATGTTTAAATATATTTTTTAATATTTGGAGCATGA 3254
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3255 GTTGTCACTTCTTGTTTGCCTTTTTTATAAGGAAATGTTGGAGAGTTACATCATTGCTAATGTAGAAATGTTAA 3328
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3329 GTGGAAAAATATACAGTTTGGTAAAATAAACTAGATTCTACATTTATTTGTGGGTTTTTTTCCCCTCCTTTCTT 3402
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3403 TCCACAGCACTTTTGATATCAAGCAAGTGGCTTCCTTTTTGAGATATTAAAAAAAAAAAGAAAAGGAAAAAAGT 3476
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3477 AAATGAAGCCCAACTACCTAACCCTTTCTTATTTGTATTTGTTTTAGTATTGTGAAGTTGTGTTAAATAGTACT 3550
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3551 AGCTAGAAATACAAATTTCTGGTTATCATTTCTCTTCCCTGTGGCACTTGACATTTTAATTGTCTTAAAGTTTT 3624
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3625 TGAAGTACATCTTCTGGCCCCTTGAGTACTGCCAGAGGCAAAAGATGTTTGTTTCTTATTCATTCCACTTTTGT 3698
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3699 CTCCTGGGATCCCTTCTGTAGCCTAAAGTATGGCTGGGAAATGGACTTGAGAAGATTGGCTTGAATTAGATCAT 3772
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3773 AATCATGTGTGATCCCATCATGAATTCATTGGAATTTGTGTTGCATGTAAGGCAATCTTTCCTGTTGTAAATCT 3846
Query 187 ------------------------------------------------------------- 186
Sbjct 3847 TCCTTTTTTAATGTACATATATTTTGAAAAATATGAATAAACATGAAATTTTAAAAGCTGC 3907
