Nucleotide Global Alignment

Description

Query:
ccsbBroad304_15487
Subject:
XR_001737843.2
Aligned Length:
4564
Identities:
161
Gaps:
4378

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  TCTCGAACTCCTGACCCCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  ACCCAGCCCTAGCCTGCTTTCTTAAATCAAGGAACGGGGCTCTAACAAGCCCAACAGGTCTCAACTCCAAGGCC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CCCTTCCCGGCTGCTCACTGGCCCCTGCCGAGAGGGGTCCTTTGGGTACAGAAGCACTGACCTCCCTGTGTTCC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CGGGGTTCCTGTCCGAGCCTGTGCTCTGCACACGTGCCCCTTCCCACGTGTCCCTTCCATGGATTAATTTAGGA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GTTAATTCATGAAGAGGTGCCCAGAGCTTGGCCCGGCCCCCGGTGAGAGGCATTATTTTTATTCTTCCCCCTCC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  AGAACAGGGGTCTTGTCCGTCTTCTCCTTGGTGGTGTATTGGATGAAGTAGGTGCTCAGCAAATGTAGGAGGAG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GTGCAGACTCCACATCTGCAAAGTCCATGCACCCACTGCGGCCAGCACGCCATCACTGCCTCCGGACAGTGCCC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CGCCCTCCCTGTCTTTCCTTCCTGAGCTTTGGAACTAAGCAGTGAGAGTGGTTCATGGTCGCAATCCCTTCAAT  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  ATCTGCGAAGAGCTTATCTGAGGATATCTTGGTGCTGATCACCTCTGAGAAGCAGCGTTGATCTTGACTCACTG  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GATCCGATTCATTCAGGATAAGCCACACCCTATTGCCATTTTCTTCACGCTCCTCTATTATCTGGGGCATAAAA  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  TTAACATTCAATTTTCTTCTTTTTCTTTTAAGAGACAAGGTCTTGCTCTGTGGCCCAGGCTGGAGTGCAGTGGC  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  ACGATCTCAGCTCACTGTAGCCTCCACCTCCCGGGTTCAAGGGATCCTTGCACCTCAGCTTCTGGAGGAGCTGG  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  GACCACAGAGGCATGTCACTGCACCCAGATAATTTTCTATTTTTTGTAGAGATGGGGTCTCACTATGTTTCCCA  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  GGCTGGTCTCAAACTCCTGGCCTCAAGGGATCCTCCCCCGTGGCCTCCCAAAGTGCTGAGATTGCAGGCATGAG  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  CCTCCGTGCCCAGCCAATGTTGAACTTTTGCTGGAAAGTCGTGCTGTTGTGTGTATGTCAGTTGAAGCTGGGCG  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  GGCATCTTAGCCAAATATCTGGTGGTTTGGTGGCATCAAATTGTCTCCTCTTCCTTCAGTCCTAGAGGCAAATG  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  CATGTCCCATCCATCATTCACAGGTTTCTGCAAGGTTTGAAGTCTGCACACTTCATTTCCATTCTTTATTGTTC  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  CTAACTGGTCTTTCTTTCTTTCTTTCTTTTTCTTTCTTTCTTTCTTTTTTGTTTTTGAGATGGAGTTTCGCTCT  1332

Query    1  ----------------ATGCAGTGGCGCCATCTCAGCTCACTGCAACCTCCATCTCCCAGGTTCAAGCGATTCT  58
                            ..||||||||.|.|||||||||||.|||||||||||.||||..|||||||||.|||||
Sbjct 1333  TGTTGCCTAGGCCGGAGGGCAGTGGCACTATCTCAGCTCATTGCAACCTCCACCTCCTGGGTTCAAGCAATTCT  1406

Query   59  CGTGCCTCGGCCTCCTGAGTAGCTGGGATTACAGGCGTGTGCCACTACACTCAACTAATTTTTGTATTTTTAGG  132
            |.||||||.||||||..|||.||||||||||||||||..|||.||.|..|.||.|||||||||||||||||||.
Sbjct 1407  CCTGCCTCAGCCTCCCAAGTGGCTGGGATTACAGGCGCCTGCGACCATGCCCAGCTAATTTTTGTATTTTTAGT  1480

Query  133  AGAGACGGGGTTTCACCCTGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG--------------------  186
            ||||||.||||||||||.||||||||||||||||||||||||||||||||||||                    
Sbjct 1481  AGAGACAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCGGCCCACATCGGCCT  1554

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1555  CCCAAAGTGCTGGGATTACAGGCGTGAGCCACCACACCCGGCCTCCTAACTGATGTTTCAGTTTGGATCTGAAG  1628

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1629  AACGGGAATTTTCATAATTTCTTTTTCAAGGTTTTTGAGAATTAGTTTGTTGCCATTTCCGAACTTCCATCCCA  1702

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1703  TTGTGATGTGCATAACCAGTCGGCTTCCTTAGCCTCATCCTCCACCCAGGGAAGCTCCGACCACGCCAGCACCA  1776

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1777  GGAAGGCCAGCCGGGGAGCAGCCTGGCCCAGGGGTCAGGAGCCGGGGCCTGTGTGACTGGGGCCTGTGTGGCTG  1850

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1851  GCACCTGGTGGATGTGAGCCCCAGGACAGGGAGTTTCTGTGCCCATGAGATGGAAGCAGCTCACTTCTTGGCCC  1924

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1925  CTTTCAAGAATCTGGGAAGAGCTCCAGGAGTCAGAGGTCTGGGTGCCAGTCCCAGCTCTGCTCCAAACTGGCCG  1998

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1999  TGTGACCTCAGCGAAGTTATTTCCCAGTTTTGTTTTCTTCTTTTACAAAATGACAGGGTGAGAGTCGTGATTGG  2072

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2073  TTTTCTTAGTGTCAGAAGTGCTGAACTCTGTTAGAAAGCGTCTCAGGTTGTTTTGTTTGACAGTGACTACCCAC  2146

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2147  TTTGCAGAGACCTGGGCTGCCCGCTCTCTGGGGAATACTGGAGGTTATGCCCCATCTCCTGTCCTGTGGGAGAA  2220

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2221  CCCACCCTCCGAACGAGGCTCTGGTGAGGTTTTCACAATCAGTAACAAGGCCGATCTCCATCAATGGAAGTCTC  2294

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2295  CCCGTTTGAGATGGGGTGTGTGCTCCTTACCCAGGCTCCTGAACAAAACCCACCTCCTTGTCTTGGCACCACTG  2368

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2369  AGAGTGCACACCGAGGGGGCTCCAGCACCAGATTGTGGGAACAGTCACGAGAAAGCAGCTCAGACTTCACACCC  2442

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2443  AGAGCCCTTGATCCCTACACACCCAGTATTCCTTCACAGCGCTCTTCCTGCTTCCTGGACACGTGGAACTGCTT  2516

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2517  CTCCATCGGGGAGGATCCATCCAGAGCCCTTTGGGTGGGTGCTCAGGGCAATAGCTGCTGCCTCTTCCTTCTGC  2590

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2591  TCAGTGCTGGGAGGCGTTACACTTTCCCCATATGGCACGGAGCAGAACGTGCACCTTTGGCTCTGGAAGGAATG  2664

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2665  AACATCCTACCCGTTAGTTAGCCCTGGGAGTCACTGACTCGGTTCTTCCCTGGACACCAATGTCCTATGGAGCA  2738

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2739  CACAGAAAGCCACGGAAGTGTGGTCTGCGGGTTGAGACGGACTCCGTTCATGTGGATAAGCAGAGGAAATTTGG  2812

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2813  CAGAAACGACCAAATGCAAAATACGTGTAGCAGCCTGAGACCGGCCGTCTACTGAAACAAAGGATGCAGTTCAG  2886

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2887  TCGGAAACCACGCTTAGCTGAGTAGCTGTCTTTAGCCATCCAGGCCCTGAGAACCAATGAACAACCCAGCTTGG  2960

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2961  CCGCTTAGAACATTTTTTCTATACTTGAGTTAAATAGATATCCAAGAACCATTACTCGTTTTTAATGTGGAGAA  3034

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3035  GTCGGTATTCTATTCTCGTGTTCTATGTTTTTTAAAGTGGCAATTTGAATTATTTCGTGCGATAGAAAACCTTA  3108

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3109  AACACAAAGTAACGTTTCTAACAAAAGGGCTGTCGATCAAGTGACAAACACGTCCTACTTTTAGATACAAGCAC  3182

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3183  GACTGAGGCAACGGCACGAAGACGCCTAAAGTGGGCTGCTGGGGAGACAAGATCTGGCCGCGAATGGAACTCGC  3256

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3257  GGCAGCTCATTAACGGGACCGTCCAGCAGGAAGGTGGGTTGGCAGCCTTCTCCCAGGGCTCCCCACGATCCCTA  3330

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3331  CCCCTGGTGTGGCGTGGCCTTCCTCCTCACATGTCGTCTGGACCAAGCAGTGTGTTGTTCTCATCCATAAAGAG  3404

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3405  TGATGGGCCGGGCACGATGGCCACACCTGTGATCCCAGCACTGTGGGAGGCTGAGGCGGGAGGATCTCCTGAGC  3478

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3479  CCAGGAGTTTGACACCAGCCTGGGTAGCATAGGGAGACCCTGTCTCTACAGAAAAAAAGTTAGCCAGGTATTCC  3552

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3553  AGAGGCTGAGGTGGGAGGATCGCTTGAACCCAGGAGGTGGAGACTGCAGTGAGCCGTGATCGCACCACTGCACT  3626

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3627  CCAACCTGGGCAACAGACTGAGACCCAGTTTCTAAAACAAATAATAAAAAGGCAGGGTGCAGTGGCTCATACCT  3700

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3701  GTAATCCCAGCACGTTGGGAGGCCAAGGTGGGCGGATCACTTGAGGTCAGGAGTTCGAGACCAGCTGGCCCACA  3774

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3775  TGGTAAAACCCCATCTCTACTAAAATGCAAAAATCAACCGGGCACAGTGGCACACGCCTGTAATCCCAGCTCTT  3848

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3849  CAGGAGGCCGAGGCAGGAGAACTGGGAGGCAGAGATTGCAGTGAGCTGAGATCGTGCCACTGCACTCCAGGCTG  3922

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3923  GGTGACAGAGCTAGACACCATCTTGAAAAAAAATAAAAGTTAAATAAAAAGAGTGATGAGGCATCCTGAGATTC  3996

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3997  ATTTATAAAATGCCGTGATTCAGGTCTCAGGGCACTGTCGCCCCTACTCACTTTGATGAAGCCAGTGCTGGGTT  4070

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4071  GCTGCTGAGGTGGGGAGGTTCATGGGCCAGGAACTGAAGGCAGCCATGAGAGCCAGACCCCTCCACCACCCCCA  4144

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4145  AGACAGCAGGGAACTCACTCCAACAGCCACCCTGGGATGCTGCCACAGCTGAGCCTGGAGGTGACCGTGACCCT  4218

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4219  GGCTGACGTCGGACTGCAGCTTTGTAAGGGAGACTGAGCCGGGACCCAGACCTACAAAAGCTGAGATGATAAAC  4292

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4293  ACTGTTTTAAGCTGCTGTGTGTCGCAGTGACTCGTGTGGTAGTGGATTTCTAGCAGAGCCGTCGTTCGTGTCTG  4366

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4367  CCTTCTCTCAGCTCAACACTCTGTAGGGCCACCCATGCCGTTGTGCATGTCAACGGTGGATTTTTTATTGCGAG  4440

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4441  TAATATTTCATTCCATTGCATGCTCACACCTCGGTTTGTTTAACTGTCTACCTGTTGATGAGCTCTGGGACATA  4514

Query  187  --------------------------------------------------  186
                                                              
Sbjct 4515  TGCAGTTCTGGGCTATTATGAGTAAAGCTGCTTTTAACATTTAAATACAA  4564

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.