Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_15487
- Subject:
- XR_001738702.2
- Aligned Length:
- 6147
- Identities:
- 160
- Gaps:
- 5965
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TTTTTTACAAAGCCTTTTCCTTTGGTCACTCACCACCAGCTTACTCATTTTTTTTTTTTTTTGCACATTACCTT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CCACACAAGTTTTACTTTGTGGCCACAATGTGCATACTTTTTTTGATTGTTACTTTCATGACATAGCAAATTGT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TTCTATAGAGTCTTTATAAAGGTCATTTAAAATGACATGTGCAGTAAGTCAAAGTCTTCTTGTGCTAGGAAATT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TGAAAAAACAAAAGTGTAGAGAAAAATACAAAAATTACTGAATCTGAACATCTATAGAGAAGTGTTGTTAGCAG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TTGGTTTATTTCCTTCCAATCACATACAGATCATATCTGATGGGTAAAGAATATTCCATACTGTCAACAGACCA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CACTGTCTTCTAAAATCGCTTCAGCAGTGAGGATCCTCTGGAATAGATCTTGTTAATCCTGAGGAATTATTCTC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CCAGCGGTGAGCTATGAGAAGTGGAATCACCAGATGTAGTAATTCCTGACAGAACTGCCGCCTGCTTGTGTGGC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TGAGATGCTGACCTAGGTATCAGGCTGGTCGCGCCGGAACCCAGCACCCACGCTGAGTCTTTCTGAGCTCCACT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CTGCTCCTGTTAGATATTAACCACCTGAGGTAGCTGTCCAGATTCAAGGCGGTAGTGATTTTGTGTGTCTGTGT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 ATTTATCACGGGGTCCGCGGCGGGAACGCAGGGGCTGTGTCCCACGTCCCCAAACCTCTAGTAGGGTACGGCGC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GATGAACATCTTCCATAAACCTTAAACCTCCCGGCGCTCAGTCACTGGTTCTTATTTCAGCCCTCTTAGCCCCG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TAGGTCGGCGCGCTGAAAACCTTTCTGGTACCTGGGGCCTTTCCTAAGAAAAAGGCACATGTCTCGCACATTTC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AGTCTGGTCTGCAACTTCAGGCGCGCCAGCACCCGAGGTTCTTCCGACCGGCCGCTCCGCTCCCAAGCCGGGAA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CTTCCCAGAGAATTGGCTCGGCCTCCGGGCGCGGGGGACAGCATCGGGAGGAGTGGGACTCCGGGCGCCGCGCA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 CGGGCCGAGGACAGCCGGGCTTGGGAGGCCCTGCCCGCCGCCCCGCGTCCTCCCGGCCACTGCCACCCCGCGCA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TCCGGAGCCGCAGCAGACTCGGCGGGGCCCGGAGCCCCACGCCCCCGGCCCGCCCCTGGCCGCCACTTGTTTAC 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TCCCCGGCGCAGCCTAGTCCGACCCTGGGGCCCGCCCCCGCCCACCGCCTATTGGCCGAGGAGGCGCGAAGAGC 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CGTAACGATTGGCCCGGGGAGGCGCGGGGCGAGCGGGGTAGGCTGCGCGAGAGGCCGAGAGGGGGCAGCAGGCG 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 ATGGCGGCGGCGGTAGCTGCGGCGGGTCGGTTAGGCTGGTTGTTCGCCGCGCTCTGCCTGGGCAACGCCGCGGG 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 GGAGGCCGCGCCGGGCCCGCGAGTGCTGGGCTTCTGCCTGGAGGAGGATGGAGCGGCGGGCGCGGGTTGGGTAC 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GCGGAGGGGCGGCGCGGGACACGCCGGACGCCACCTTCCTCCTGCGCCTCTTCGGCCCGGGCTTCGCCAACAGC 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TCTTGGTCCTGGGTGGCCCCGGAGGGGGCGGGCTGCCGGGAGGAGGCGGCCTCCCCCGCGGGCGAGTGGCGCGC 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 GCTGCTGCGCTTGCGCCTGCGGGCCGAGGCCGTGCGCCCGCACTCGGCGCTGCTGGCGGTGCGCGTGGAGCCGG 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 GTGGCGGGGCGGCTGAGGAGGCGGCGCCGCCCTGGGCTCTGGGCCTGGGGGCGGCCGGGCTGCTGGCGCTGGCA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 GCGCTGGCGCGAGGCCTGCAGCTGAGCGCGCTGGCGCTGGCGCCTGCCGAGGTGCAGGTGCTGCGCGAGAGCGG 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 CTCGGAGGCGGAGCGTGCGGCGGCGCGGCGTTTGGAGCCCGCGCGGCGCTGGGCCGGCTGCGCCTTGGGCGCGC 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TGCTGCTGCTGGCCAGCCTGGCGCAGGCGGCGCTGGCGGTGCTGCTGTACCGCGCGGCCGGCCAGCGTGCGGTG 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 CCCGCCGTGTTGGGCAGCGCGGGGCTCGTGTTCCTGGTGGGAGAGGTGGTGCCGGCCGCCGTGAGCGGGCGCTG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 GACGCTGGCGCTGGCGCCGCGAGCGCTCGGCCTCAGCCGCCTGGCCGTCCTGCTCACTCTGCCCGTCGCGCTGC 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 CCGTGGGGCAGCTGCTGGAGCTGGCGGCGCGGCCCGGGCGGCTGCGGGAGCGGGTGCTGGAGCTGGCGCGCGGC 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 GGCGGCGACCCCTACAGCGATCTCAGCAAGGGCGTGCTGCGCTGCCGGACCGTGGAGGACGTGCTCACGCCCCT 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 CGAAGACTGCTTCATGCTGGACGCCAGCACCGTGCTGGACTTCGGCGTCCTGGCCAGCATCATGCAGAGCGGCC 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 ACACGCGCATCCCGGTGTACGAGGAGGAGCGCTCCAACATCGTGGACATGCTCTACCTCAAGGACTTGGCCTTC 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 GTGGATCCCGAAGACTGCACGCCGCTCAGCACCATCACTCGTTTCTACAACCATCCGCTCCACTTCGTCTTCAA 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 CGACACCAAGCTGGACGCTGTCCTGGAGGAATTCAAGCGAGGGAAGTCCCACCTGGCCATCGTGCAGAAGGTGA 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 ACAACGAGGGTGAAGGCGACCCCTTCTACGAGGTCCTGGGCCTGGTCACCCTGGAGGACGTGATCGAGGAGATC 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 ATCAGGTCCGAGATCCTGGACGAGTCTGAAGACTACCGAGACACCGTGGTGAAGAGGAAGCCTGCTTCTCTGAT 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 GGCCCCTCTGAAGCGGAAGGAGGAGTTCTCCTTGTTCAAGAAGTGGATGTATTCAGCCCGCTGCGCATCTCTGA 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 GAAGGTCCTGCTGCACCTGTTGAAGCATCCCAGTGTCAACCAGGAAGTGAGGTTTGACGAGAGCAACCGGCTGG 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 CCACACACCACTACCTGTACCAGCGCAGCCAGCCGGTGGATTACTTCATTCTCATCCTGCAGGGCAGGGTTGAA 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 GTGGAGATCGGGAAAGAGGGTCTGAAGTTTGAGAATGGGGCCTTCACGTACTATGGAGTGTCGGCCCTAACTGT 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 GCCATCCTCGGTTCACCAGTCCCCGGTGTCCTCGCTCCAGCCCATCCGCCATGACCTGCAGCCCGACCCAGGTG 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 ACGGCACGCATTCATCTGCGTATTGTCCCGACTACACCGTGAGGGCGCTCTCTGATCTGCAGCTCATCAAGGTT 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 ACGCGACTGCAGTACCTCAATGCACTCCTGGCTACCCGAGCCCAGAACCTGCCACAGTCCCCTGAGAACACCGA 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 CCTGCAGGTTATTCCAGGCAGCCAGACCAGGCTCCTTGGTGAGAAGACCACCACAGCGGCAGGGTCCAGCCACA 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 GCAGGCCCGGCGTCCCGGTGGAAGGCAGCCCTGGGCGGAACCCAGGCGTTTAACGGCTCACTAGGCAGCCCCAG 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 ATCTGGGGAACAGATGAGCACGTGGGGAGCTGGAGTGAGCTGAGCAGAAGTTTTGTGCCCGCCTGCCCCCATCC 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 CCTCCAGGCCACGTTTTAGATGGCCCTTGTAGTTGCGGGTCCTGGGTGTCCTCAGAACTAGACATCAATGCCTG 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 GATCCTTCAGCCGGCCCTGCCCTCCTTTAGGAGACAGGAGTCACCAGGGCACAGCCCTCCAGGCCCGCCTCAGG 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 AAGGAATGAAAGGAATGCCATCATCTCTAGTTCCCAGGGCCCAGCCTTCCCCTTCTCCCCCGGGGCAGGGACAG 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 TGCGGCATATTCAGATTCAGACCTCTTTGGGCTGAGCCACCTTGTGAGTGCAGTTACTGCCTTTGTGTGGCCGT 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 GACCTCTATTTGTTTGCTTTTAATTTGCCAACCTATCGCTGCTGGCAGCACTTTTTGAGCAAGCCGAGAGCACC 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 CATTTTGGCTGGGGGTTCAGATCGATGGCCTTGTCCATGTTGTCCTTTCTGGCTTCCCTGATGGTGTCATGTTT 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 CAGCGCATGCGCCCCAGCCTTTCCCATGTGCCAAACCAGAAGCTCCACTGCCCGTAGGCTGTCCCTGTAGCCCT 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 GCTCCCTCCCTGGAGGCTGCTCTTCTGATTCTGAGAGCTGGCCTAGTGGTGCTGAGGGCCCCTTTCTGCTTCTC 4070
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4071 TGCCCACCTGCTGAGTTGCCACTCGCAGTGTTGTCAGTTCCCGTGTTCTGAGAAGAGGTCATGCCTGGGAGGAA 4144
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4145 GGGATCGTCATGCTGCATCGAATCCTCTCTCCGCCGTGTGGCCCCCAGGAGAGTAGCTGCCTGTTGCACCTGCT 4218
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4219 CCACACCTCCCCACAGCCTCCCTGCAGGTGCTGTGTGGCCGTGATGTGCAGAGAGCAGTGAGGGAGGGTTCATG 4292
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4293 AACCAGGTGGATCCTCTTTAAAAAAAAAAAAGTTTTTGTTATATCTCTAGAACATTTCAAGTCTTTTCCTTTTT 4366
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4367 TTCTGTTCCTAGCTATGGGGTTTTAGAGAAGTGGGAACAGGAAGGCATTTGTCTTTTTCTTCTAGTTTACTACA 4440
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4441 TTTTCCTTCCGTAGTTCTTCAGCTGTGTGGAAACGGGCATCACAAGGACATAGGATCATAGATTGGGTAGGGAG 4514
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4515 GGAGGAGGATTTCTGGAACTTTTCTCAAAGGAATTTGGACCCTTATAAATGGGACTGAAGGTCAAAACAACAGT 4588
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4589 GATATCCTTGCTTAGAAATTGTCCTCAAGGAATAAACTCTGAGAGCAAGCCCGGGTTGGAAACAGATGCTTTAA 4662
Query 1 -------------------------------------------------------------------------A 1
.
Sbjct 4663 AATCCTCTCTCCAGAACAGTGGTTTTTTGTTTGTTTATTTGAGATGGAGTCTCACTCTGTCACCCAGGCTGGAG 4736
Query 2 TGCAGTGGCGCCATCTCAGCTCACTGCAACCTCCATCTCCCAGGTTCAAGCGATTCTCGTGCCTCGGCCTCCTG 75
||||||||.|..||||..|||||||||||||||||.|||||||||||||||.||||||.||.|||.|||.||||
Sbjct 4737 TGCAGTGGTGAGATCTTGGCTCACTGCAACCTCCACCTCCCAGGTTCAAGCCATTCTCCTGTCTCAGCCCCCTG 4810
Query 76 AGTAGCTGGGATTACAGGCGTGTG----CCACTACACTCAACTAATTTTTGTATTTTTAGGAGAGACGGGGTTT 145
||||||||||||||||| ||| ||||.||||.|..|||||||||||||||||||.|||||.|||||||
Sbjct 4811 AGTAGCTGGGATTACAG----GTGCCCACCACCACACCCGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTT 4880
Query 146 CACCCTGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG--------------------------------- 186
||||.||||||||||||||.|||.|||||||||||||||.|
Sbjct 4881 CACCATGTTGGCCAGGCTGATCTTGAACTCCTGACCTCAGGTGATCTGCCTGCCTTGGCCTCCCAAAGTGCTGG 4954
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4955 GATTATAGGTGTGAGCTAAGATCAGGGATTCTTAACCTTGGCTGCACACCAGAATCACCTGGCAAATTAAAAAT 5028
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5029 ACGTGGACCTGCCACCAGAGCTTGTGATTTAATCAGAGTCGGCATCAGAGTTTTCAATTTTTTATTTATTTATT 5102
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5103 ATTATTATTATTATTATTATTATTATTGAGACAAGATCTTGCTCTGTCGCCCAGACTGGAGTGCAGTGGTGTGA 5176
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5177 TCACGGCTTGCTGCAGCCTCGACCTCCCTGGTTCAGGCCATCCTGCCACCTCAGCCTCCTGAGTAGTAGGGACT 5250
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5251 ACAGGTAGGCACCACCACACCCAGCTAATACTTTTAATTTTTTTTTGTAGAGATAGGGTCTCATTATGTTGCCT 5324
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5325 GGGGTAGTCTCGAACTCCTAGGCTCAAGCGATCCTCCTGCCTCGGCCTCCCAAAGTGTTGAGATTATAGGCGTG 5398
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5399 AGCCACCGTGCCCAGATTCACAGAAGTTTCATACACCTTTCACCCAGGTTCCCCTAATGTTAACAGCTTACATA 5472
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5473 TAACCTTGGTACATTTATCAAAACTAAAGGTGCAATCATACTAATAGCTAGAGTTTATTTGGATTTTACCATTT 5546
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5547 TTCCCAATGTCCCTTTTCTGCTGCAGCAGCCAATCCAGGATGCCATACTGCACTTAGAGCTGTTGCTTTCTTTT 5620
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5621 TTCCTAACTTTATATTTTGAAATAATTTCAGATGATAGGAAGTTGTAAAGGTAAGGGCCCCACGCACCCTTCAT 5694
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5695 CTAGTTTCCCTCCATGGTTACATCTTATATGGTTGTAATGCAGTATTCCAACAAAGACTCTGACACTGGTGCGA 5768
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5769 TGTGGGTGGACAGTCCAAATCATTTGTCACATGTACATCTGTGTAACTACCACTGCAATCAGGATAAAGAAGTC 5842
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5843 CCATCCCCACAAGGATCTCCCTCCCCACCTTCCCTAACTCCTGGTAACCACTAATCGTTCATCTCTTCTTATTT 5916
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5917 TGTCATTTCAAGAATGTTGTATAAATGGGAGCATAGTGTGTAAGCATTCGGGATTGTCTTTTTTCACTCGGCGT 5990
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5991 CATTCTCGGGAGATCATCCAGGCATTGCATGTGTCAACAGTTTGCTCCTTTTTATTGCTGAGTGGTATTCCGTG 6064
Query 187 -------------------------------------------------------------------------- 186
Sbjct 6065 GTGTATGCATTGGCCCCCTGAAGGACACCTGGGATGTTTCCAGTTTGGGGCTATTCCAAATAAAGCTGCTACGA 6138
Query 187 ----- 186
Sbjct 6139 CTATT 6143
