Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_15487
- Subject:
- XR_001739016.2
- Aligned Length:
- 4562
- Identities:
- 164
- Gaps:
- 4377
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATTGCAGCAGGCCCTGCGCCGCCGCGCCCCGCGTCCCACCCCGCGCCGCTCCTCACAGCCCTGCGCTCCGGGAA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 ACTGCAGGTGGCCGGCAGTGGCCAGGGGATGGCGGGGGCGCTTCTGGAACCTGACTCAGTTTTGTAGGTTCCTT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 ATCTCGGTTGTTTACCGCGGGCTTTGCGGAATGCCCCCGCTTCCGTTTCCGCCCGGCTCCGAACCCCCGAACCC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CTTCTACCCGCAACTCCGCCCCGGATTCCCAGAAAGGGGCGACCTGGGCCACAGCGGTACAAGCTGCACCCCGA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TGGACCTGAGAGACCGGAAGTAACCCTTGGCCAACTCTGGCCGCCCCCTGCAGCCGCAGCCCCAGAGGCCCACC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CGCGAGCTTCAGTGGCGGGCCCTCAGCGTCGTGTAAACTTTGCTTAAAATGATCTTGAGAGTTCAATTCTTGGG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GTGAACTGTTGAGAAGATCTGGCATTTTTCCTTTCGAAAGTTGTTGGGAACGTGGACTTTCCCAACAATTGTGT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 ATGCGCTCGATCTCACTCAGTGGGAGCCGCCGCCCTGGAGGGAATTTCACAATAGCCTGGTCAGGGCGGTTATT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TTCCAGAGCAGTTTAATGTCTATTTTGCCCAAGTGCAAGGAAAGCTTGCCTTGGGAAAGCTGGGAATGCTTGGC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TAATGAAAAGTTTTTAGAGCCTTTTAAAATGAACCTGTTTCTGCCACTTTTCCACCGCCTCAAAACGACTGGGA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AATGTAAACTGGCTTCAAGATGTTCTTGCTTGAGGGTGTCTGGATTTGGACAGAAGGCCATGTTCTTTTAATAT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TAACAGTGGCACGCAGTAGAACAAAGGCCACTGAAATTCAGAATCAGTTTTTGGCTCCACGGGCAGGAAGTAAA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TTCAAGGACGCCAGAGGTCTTGCGAATATTTTAATTGGTTGACATTTGAAATTTGTTCTTAAGCAATGAGGGGT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GAAACCAGTAGGGGGATAGCGTATAGCATAAGTAAAGCTTTTTGGACATCAACAAACTGCGATAATCTACAACA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GACAGCGGGCTCTGGAAGGTTTGACCTGCTTTAGAGAGAGATTTCCGATAAGAGGAACGGAGTTTTTGGCACTT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TTCGGTTTGGTGATTCCCCTAAATAACCTTACAAAAGTTTCGTTGAACAAAAAACCTGGCTGGAGCTCCAAGAT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CTTTTTTTTTTTTTTTTTTTTTTGAGACAGCATTTCACTCTTGTTGCCCAGGCTGGAATGCAATGGCACTATCT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CTGCTCACCGCAACCTCCGCCTGTCGGGTTCAAGCGATTCTCGTGCCTCAGCCTCTCAAGTAGCTGAGATTACA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GGCATGCACCACCATGCCCGGCTAGTTTTGTATTTTTAATAGAGACGGGGTTTCTCCATGTTGGTCAGTCTGGT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CTCGAACTCCTGACCTTAGGTGATCCGCCCGCCTCGGCATCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TGCCCGGCCCAACTCCAAGATCTAAACAAAAAAGACTGGGTTGAAAGGGAGTTTTTAATGTTTACTGTTTGCTT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TACATCCATTTTCTTGTTTTGTTAATACTTGCTTTACTTAAGCTTTTGGGTCAAATGTCCTCGTTAAAATGGCT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TTCTCTAGCGACTTTATGTTTTACGTTTCTGTTTGTAACTGACATTTGACCTTCTTTTAACACGGTATTACTTG 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 CTTCCTTATACCGGTTTCCAAGGTGAAGCCATTTGCAGGGTCGCTGGGTTTCCCCCTCCCCCCGAAAGTCTTGC 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 GCGACCCGGGGTGGGCCGGATAGTGTGCAGTTTTTTGAGCCTTGGGCTGGGGACCTCCAGGAAGCTGAAGCGGA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 AATTGCCTAGGCCCCTGGGGCATTGGAGGTCCTACCGCAGCTCCTAGTAGGTGGTGGGGGCGCAGCGGCTGTCC 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 CCACTCAGTCCTGGTGGGGTCGCACGTAACGGTCCTGAGCTATGCATAAGCCGTTTGACCACGCATGGAGAATT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TTACCACCCAGAGACACGCGAGTGGCCCTGTGCAAGTTTCAACTGCGCGGGGGGCGGGGAATTCCGCAGACAGG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 ATTCTAGAATTTATGTCTTGTGTGGTAACATTTCAGCCGGTGGGTGGCGGGGATTAGGCGTGAAGCGGTTCAGC 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 AGGCAGAGGTTCTCGGACGCCCTCCGGCGAAGCCACCTGTTGATGCTTTTGACTTTCTGTCCTTGTTCCTCGTC 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 CCATCTGGAGCATTTCCAATTCTGGTTTTGCGGAGCAGCAGGTCTGAGCTTGTCCGGCGAGGGTGGGAGTTGGT 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 CCCGGCGGAGATCCAGTGGGAAGAGCCGGCGGCTGCCCGGGCAACTCCCCCACTGGAAAGGATTCTGAAAGAAA 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 TGAAGTCAGCCCTCAGAAATGAAGTTGACTGCCTGCTGGCTTTCTGTTGACTGGCCCGGAGCTGTACTGCAAGA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 CCCTTGTGAGCTTCCCTAGTCTAAGAGTAGGATGTCTGCTGAAGTCATCCATCAGGTTGAAGAAGCACTTGATA 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 CAGATGAGAAGGAGATGCTGCTCTTTTTGTGCCGGGATGTTGCTATAGATGTGGTTCCACCTAATGTCAGGGAC 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 CTTCTGGATATTTTACGGGAAAGAGGTAAGCTGTCTGTCGGGGACTTGGCTGAACTGCTCTACAGAGTGAGGCG 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 ATTTGACCTGCTCAAACGTATCTTGAAGATGGACAGAAAAGCTGTGGAGACCCACCTGCTCAGGAACCCTCACC 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 TTGTTTCGGACTATAGAGTGCTGATGGCAGAGATTGGTGAGGATTTGGATAAATCTGATGTGTCCTCATTAATT 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 TTCCTCATGAAGGATTACATGGGCCGAGGCAAGATAAGCAAGGAGAAGAGTTTCTTGGACCTTGTGGTTGAGTT 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 GGAGAAACTAAATCTGGTTGCCCCAGATCAACTGGATTTATTAGAAAAATGCCTAAAGAACATCCACAGAATAG 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 ACCTGAAGACAAAAATCCAGAAGTACAAGCAGTCTGTTCAAGGAGCAGGGACAAGTTACAGGAATGTTCTCCAA 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 GCAGCAATCCAAAAGAGTCTCAAGGATCCTTCAAATAACTTCAGGCTCCATAATGGGAGAAGTAAAGAACAAAG 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 ACTTAAGGAACAGCTTGGCGCTCAACAAGAACCAGTGAAGAAATCCATTCAGGAATCAGAAGCTTTTTTGCCTC 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 AGAGCATACCTGAAGAGAGATACAAGATGAAGAGCAAGCCCCTAGGAATCTGCCTGATAATCGATTGCATTGGC 3256
Query 1 ----------------ATGCAGTGGCGCCATCTCAGCTCACTGCAACCTCCATCTCCCAGGTTCAAGCGATTCT 58
.||||.||||||.||||||||||||.||||.|||||.|||||||||||||||||||||
Sbjct 3257 AATGAGACAGGTTGGAGTGCAATGGCGCAATCTCAGCTCACCGCAATCTCCACCTCCCAGGTTCAAGCGATTCT 3330
Query 59 CGTGCCTCGGCCTCCTGAGTAGCTGGGATTACAGGCGTGTGCCACTACACTCAACTAATTTTTGTATTTTTAGG 132
|.||||||.||||||||||||.||||||||||||||.||||||||.|..|.||.|||| ||||||||||||||.
Sbjct 3331 CCTGCCTCAGCCTCCTGAGTAACTGGGATTACAGGCATGTGCCACCATGCCCAGCTAA-TTTTGTATTTTTAGT 3403
Query 133 AGAGACGGGGTTTCACCCTGTTGGCCAGGCTGGTCTCGAACTCCTGACCT-----------CA----AG----- 186
||||||..|||||||||.|||.|||||||||||||||||.|||||||||| || ||
Sbjct 3404 AGAGACAAGGTTTCACCATGTCGGCCAGGCTGGTCTCGATCTCCTGACCTTGTGATCTGCCCACCTCAGCCTCC 3477
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3478 CAAAGTGCTACGATTACAGGCGTCAGCCATCATGCCTGGCTTATTCTCTCCATTTTCAAGAGCTTCTTCGAGAC 3551
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3552 ACCTTCACTTCCCTGGGCTATGAAGTCCAGAAATTCTTGCATCTCAGTATGCATGGTATATCCCAGATTCTTGG 3625
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3626 CCAATTTGCCTGTATGCCCGAGCACCGAGACTACGACAGCTTTGTGTGTGTCCTGGTGAGCCGAGGAGGCTCCC 3699
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3700 AGAGTGTGTATGGTGTGGATCAGACTCACTCAGGGCTCCCCCTGCATCACATCAGGAGGATGTTCATGGGAGAT 3773
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3774 TCATGCCCTTATCTAGCAGGGAAGCCAAAGATGTTTTTTATTCAGAACTATGTGGTGTCAGAGGGCCAGCTGGA 3847
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3848 GGACAGCAGCCTCTTGGAGGTGGATGGGCCAGCGATGAAGAATGTGGAATTCAAGGCTCAGAAGCGAGGGCTGT 3921
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3922 GCACAGTTCACCGAGAAGCTGACTTCTTCTGGAGCCTGTGTACTGCGGACATGTCCCTGCTGGAGCAGTCTCAC 3995
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3996 AGCTCACCATCCCTGTACCTGCAGTGCCTCTCCCAGAAACTGAGACAAGAAAGAAAACGCCCACTCCTGGATCT 4069
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4070 TCACATTGAACTCAATGGCTACATGTATGATTGGAACAGCAGAGTTTCTGCCAAGGAGAAATATTATGTCTGGC 4143
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4144 TGCAGCACACTCTGAGAAAGAAACTTATCCTCTCCTACACATAAGAAACCAAAAGGCTGGGCGTAGTGGCTCAC 4217
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4218 ACCTGTAATCCCAGCACTTTGGGAGGCCAAGGAGGGCAGATCACTTCAGGTCAGGAGTTCGAGACCAGCCTGGC 4291
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4292 CAACATGGTAAACGCTGTCCCTAGTAAAAATACAAAAATTAGCTGGGTGTGGGTGTGGGTACCTGTATTCCCAG 4365
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4366 TTACTTGGGAGGCTGAGGTGGGAGGATCTTTTGAACCCAGGAGTTCAGGGTCATAGCATGCTGTGATTGTGCCT 4439
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4440 ACGAATAGCCACTGCATACCAACCTGGGCAATATAGCAAGATCCCATCTCTTTAAAAAAAAAAAAAAAGGACAG 4513
Query 187 ------------------------------------------------ 186
Sbjct 4514 GAACTATCTTACTCAATGTATTAGTCATGTTTCTCTAGAGGGACAGAA 4561
