Nucleotide Global Alignment

Description

Query:
ccsbBroad304_15487
Subject:
XR_001739016.2
Aligned Length:
4562
Identities:
164
Gaps:
4377

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATTGCAGCAGGCCCTGCGCCGCCGCGCCCCGCGTCCCACCCCGCGCCGCTCCTCACAGCCCTGCGCTCCGGGAA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  ACTGCAGGTGGCCGGCAGTGGCCAGGGGATGGCGGGGGCGCTTCTGGAACCTGACTCAGTTTTGTAGGTTCCTT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  ATCTCGGTTGTTTACCGCGGGCTTTGCGGAATGCCCCCGCTTCCGTTTCCGCCCGGCTCCGAACCCCCGAACCC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CTTCTACCCGCAACTCCGCCCCGGATTCCCAGAAAGGGGCGACCTGGGCCACAGCGGTACAAGCTGCACCCCGA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TGGACCTGAGAGACCGGAAGTAACCCTTGGCCAACTCTGGCCGCCCCCTGCAGCCGCAGCCCCAGAGGCCCACC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CGCGAGCTTCAGTGGCGGGCCCTCAGCGTCGTGTAAACTTTGCTTAAAATGATCTTGAGAGTTCAATTCTTGGG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GTGAACTGTTGAGAAGATCTGGCATTTTTCCTTTCGAAAGTTGTTGGGAACGTGGACTTTCCCAACAATTGTGT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  ATGCGCTCGATCTCACTCAGTGGGAGCCGCCGCCCTGGAGGGAATTTCACAATAGCCTGGTCAGGGCGGTTATT  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  TTCCAGAGCAGTTTAATGTCTATTTTGCCCAAGTGCAAGGAAAGCTTGCCTTGGGAAAGCTGGGAATGCTTGGC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TAATGAAAAGTTTTTAGAGCCTTTTAAAATGAACCTGTTTCTGCCACTTTTCCACCGCCTCAAAACGACTGGGA  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  AATGTAAACTGGCTTCAAGATGTTCTTGCTTGAGGGTGTCTGGATTTGGACAGAAGGCCATGTTCTTTTAATAT  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  TAACAGTGGCACGCAGTAGAACAAAGGCCACTGAAATTCAGAATCAGTTTTTGGCTCCACGGGCAGGAAGTAAA  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  TTCAAGGACGCCAGAGGTCTTGCGAATATTTTAATTGGTTGACATTTGAAATTTGTTCTTAAGCAATGAGGGGT  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  GAAACCAGTAGGGGGATAGCGTATAGCATAAGTAAAGCTTTTTGGACATCAACAAACTGCGATAATCTACAACA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  GACAGCGGGCTCTGGAAGGTTTGACCTGCTTTAGAGAGAGATTTCCGATAAGAGGAACGGAGTTTTTGGCACTT  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  TTCGGTTTGGTGATTCCCCTAAATAACCTTACAAAAGTTTCGTTGAACAAAAAACCTGGCTGGAGCTCCAAGAT  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  CTTTTTTTTTTTTTTTTTTTTTTGAGACAGCATTTCACTCTTGTTGCCCAGGCTGGAATGCAATGGCACTATCT  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  CTGCTCACCGCAACCTCCGCCTGTCGGGTTCAAGCGATTCTCGTGCCTCAGCCTCTCAAGTAGCTGAGATTACA  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  GGCATGCACCACCATGCCCGGCTAGTTTTGTATTTTTAATAGAGACGGGGTTTCTCCATGTTGGTCAGTCTGGT  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  CTCGAACTCCTGACCTTAGGTGATCCGCCCGCCTCGGCATCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCA  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  TGCCCGGCCCAACTCCAAGATCTAAACAAAAAAGACTGGGTTGAAAGGGAGTTTTTAATGTTTACTGTTTGCTT  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  TACATCCATTTTCTTGTTTTGTTAATACTTGCTTTACTTAAGCTTTTGGGTCAAATGTCCTCGTTAAAATGGCT  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  TTCTCTAGCGACTTTATGTTTTACGTTTCTGTTTGTAACTGACATTTGACCTTCTTTTAACACGGTATTACTTG  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  CTTCCTTATACCGGTTTCCAAGGTGAAGCCATTTGCAGGGTCGCTGGGTTTCCCCCTCCCCCCGAAAGTCTTGC  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  GCGACCCGGGGTGGGCCGGATAGTGTGCAGTTTTTTGAGCCTTGGGCTGGGGACCTCCAGGAAGCTGAAGCGGA  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  AATTGCCTAGGCCCCTGGGGCATTGGAGGTCCTACCGCAGCTCCTAGTAGGTGGTGGGGGCGCAGCGGCTGTCC  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  CCACTCAGTCCTGGTGGGGTCGCACGTAACGGTCCTGAGCTATGCATAAGCCGTTTGACCACGCATGGAGAATT  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  TTACCACCCAGAGACACGCGAGTGGCCCTGTGCAAGTTTCAACTGCGCGGGGGGCGGGGAATTCCGCAGACAGG  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  ATTCTAGAATTTATGTCTTGTGTGGTAACATTTCAGCCGGTGGGTGGCGGGGATTAGGCGTGAAGCGGTTCAGC  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  AGGCAGAGGTTCTCGGACGCCCTCCGGCGAAGCCACCTGTTGATGCTTTTGACTTTCTGTCCTTGTTCCTCGTC  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  CCATCTGGAGCATTTCCAATTCTGGTTTTGCGGAGCAGCAGGTCTGAGCTTGTCCGGCGAGGGTGGGAGTTGGT  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  CCCGGCGGAGATCCAGTGGGAAGAGCCGGCGGCTGCCCGGGCAACTCCCCCACTGGAAAGGATTCTGAAAGAAA  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  TGAAGTCAGCCCTCAGAAATGAAGTTGACTGCCTGCTGGCTTTCTGTTGACTGGCCCGGAGCTGTACTGCAAGA  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  CCCTTGTGAGCTTCCCTAGTCTAAGAGTAGGATGTCTGCTGAAGTCATCCATCAGGTTGAAGAAGCACTTGATA  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  CAGATGAGAAGGAGATGCTGCTCTTTTTGTGCCGGGATGTTGCTATAGATGTGGTTCCACCTAATGTCAGGGAC  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  CTTCTGGATATTTTACGGGAAAGAGGTAAGCTGTCTGTCGGGGACTTGGCTGAACTGCTCTACAGAGTGAGGCG  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  ATTTGACCTGCTCAAACGTATCTTGAAGATGGACAGAAAAGCTGTGGAGACCCACCTGCTCAGGAACCCTCACC  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  TTGTTTCGGACTATAGAGTGCTGATGGCAGAGATTGGTGAGGATTTGGATAAATCTGATGTGTCCTCATTAATT  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  TTCCTCATGAAGGATTACATGGGCCGAGGCAAGATAAGCAAGGAGAAGAGTTTCTTGGACCTTGTGGTTGAGTT  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  GGAGAAACTAAATCTGGTTGCCCCAGATCAACTGGATTTATTAGAAAAATGCCTAAAGAACATCCACAGAATAG  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  ACCTGAAGACAAAAATCCAGAAGTACAAGCAGTCTGTTCAAGGAGCAGGGACAAGTTACAGGAATGTTCTCCAA  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  GCAGCAATCCAAAAGAGTCTCAAGGATCCTTCAAATAACTTCAGGCTCCATAATGGGAGAAGTAAAGAACAAAG  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  ACTTAAGGAACAGCTTGGCGCTCAACAAGAACCAGTGAAGAAATCCATTCAGGAATCAGAAGCTTTTTTGCCTC  3182

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3183  AGAGCATACCTGAAGAGAGATACAAGATGAAGAGCAAGCCCCTAGGAATCTGCCTGATAATCGATTGCATTGGC  3256

Query    1  ----------------ATGCAGTGGCGCCATCTCAGCTCACTGCAACCTCCATCTCCCAGGTTCAAGCGATTCT  58
                            .||||.||||||.||||||||||||.||||.|||||.|||||||||||||||||||||
Sbjct 3257  AATGAGACAGGTTGGAGTGCAATGGCGCAATCTCAGCTCACCGCAATCTCCACCTCCCAGGTTCAAGCGATTCT  3330

Query   59  CGTGCCTCGGCCTCCTGAGTAGCTGGGATTACAGGCGTGTGCCACTACACTCAACTAATTTTTGTATTTTTAGG  132
            |.||||||.||||||||||||.||||||||||||||.||||||||.|..|.||.|||| ||||||||||||||.
Sbjct 3331  CCTGCCTCAGCCTCCTGAGTAACTGGGATTACAGGCATGTGCCACCATGCCCAGCTAA-TTTTGTATTTTTAGT  3403

Query  133  AGAGACGGGGTTTCACCCTGTTGGCCAGGCTGGTCTCGAACTCCTGACCT-----------CA----AG-----  186
            ||||||..|||||||||.|||.|||||||||||||||||.||||||||||           ||    ||     
Sbjct 3404  AGAGACAAGGTTTCACCATGTCGGCCAGGCTGGTCTCGATCTCCTGACCTTGTGATCTGCCCACCTCAGCCTCC  3477

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3478  CAAAGTGCTACGATTACAGGCGTCAGCCATCATGCCTGGCTTATTCTCTCCATTTTCAAGAGCTTCTTCGAGAC  3551

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3552  ACCTTCACTTCCCTGGGCTATGAAGTCCAGAAATTCTTGCATCTCAGTATGCATGGTATATCCCAGATTCTTGG  3625

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3626  CCAATTTGCCTGTATGCCCGAGCACCGAGACTACGACAGCTTTGTGTGTGTCCTGGTGAGCCGAGGAGGCTCCC  3699

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3700  AGAGTGTGTATGGTGTGGATCAGACTCACTCAGGGCTCCCCCTGCATCACATCAGGAGGATGTTCATGGGAGAT  3773

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3774  TCATGCCCTTATCTAGCAGGGAAGCCAAAGATGTTTTTTATTCAGAACTATGTGGTGTCAGAGGGCCAGCTGGA  3847

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3848  GGACAGCAGCCTCTTGGAGGTGGATGGGCCAGCGATGAAGAATGTGGAATTCAAGGCTCAGAAGCGAGGGCTGT  3921

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3922  GCACAGTTCACCGAGAAGCTGACTTCTTCTGGAGCCTGTGTACTGCGGACATGTCCCTGCTGGAGCAGTCTCAC  3995

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3996  AGCTCACCATCCCTGTACCTGCAGTGCCTCTCCCAGAAACTGAGACAAGAAAGAAAACGCCCACTCCTGGATCT  4069

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4070  TCACATTGAACTCAATGGCTACATGTATGATTGGAACAGCAGAGTTTCTGCCAAGGAGAAATATTATGTCTGGC  4143

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4144  TGCAGCACACTCTGAGAAAGAAACTTATCCTCTCCTACACATAAGAAACCAAAAGGCTGGGCGTAGTGGCTCAC  4217

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4218  ACCTGTAATCCCAGCACTTTGGGAGGCCAAGGAGGGCAGATCACTTCAGGTCAGGAGTTCGAGACCAGCCTGGC  4291

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4292  CAACATGGTAAACGCTGTCCCTAGTAAAAATACAAAAATTAGCTGGGTGTGGGTGTGGGTACCTGTATTCCCAG  4365

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4366  TTACTTGGGAGGCTGAGGTGGGAGGATCTTTTGAACCCAGGAGTTCAGGGTCATAGCATGCTGTGATTGTGCCT  4439

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4440  ACGAATAGCCACTGCATACCAACCTGGGCAATATAGCAAGATCCCATCTCTTTAAAAAAAAAAAAAAAGGACAG  4513

Query  187  ------------------------------------------------  186
                                                            
Sbjct 4514  GAACTATCTTACTCAATGTATTAGTCATGTTTCTCTAGAGGGACAGAA  4561

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