Nucleotide Global Alignment

Description

Query:
ccsbBroad304_15487
Subject:
XR_001744071.1
Aligned Length:
5003
Identities:
161
Gaps:
4817

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CTCGAATTTTTAGGCCGAGAAGATACAGTGTGTGTGGTACTGTCTACAAACCAACGAATTTATATTGAAGCTAC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AATCACAATCATTGTTATTGCTGCAAAACAGGTATTCTCTTGGCCAAACTCAAGCAGGAGTCAGAGGATAAAGA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AGCCCATTGAAAATGTCCATACTGATCAGCGCCAGGGCAGGCAACAAGATGCAGAATGGGGCCAGGGTACCTGG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  ATGATACACAGCACAAGGTCTAAAATTGAGGAATCAAGAAATAGCAAGACGGCCAGGTGCGGTGGCTCATGCCT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GTAATCCCAGCACTTTAGGAGGCTGAGACGCTTTCCTTCTGCAGACTGCCTTTCCTGACAAGAACAGACTCAGA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CAGTCTGTAGAGTGGTTCCGCCCCGAAGCTGAAAAATAGTGTACAAAGCTGTCACGAAGTTTCCACTGCACAGC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  TCCAATGTTCCATTTGCTCTGGCGACAGATCTTTCGGTGACCTTCGAAAGCGACATCGAGATTGACGATGTATA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  AGAATCTGCCGCCAGAAAGCACTGCATGTTGCCCAAGACAGTCACAGACATCGCAGTTGCCTGGGAGTCACGAA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  ACTCTACCACTACGTTCTCGCTGCTCCATCGCGCCGCCATCTCCCACTCTCGGCCGCCAAGGCCCCAGGACCGC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GCCCTCCCATCCACCAGACCCGGGTCCCCTGGCCCTCTGAGCCCTACACAGCCCGCGAGTCAGCCCTGACACGT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CCAGTCCCCTGCTTCTTTGTGTTTTGATAGAAAACAAAACAAAACAAAACAAAACAAAAACATCTTGCCAATCC  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  ATTTGGCTTATAAAATAATGTATTGTGCACATTTATTATAATGATAATAATTACATAAGAAGTAATTTGGGAGA  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  ATGGGGTCCAAAATCAGCTATAGTATAGTCATGAGGGTTGCACCTGGAAGAGACTGCCTCTCTGATGTTCAAAG  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  TTTGAGAATTAGTCCTTAATGAATAAATGTATATAATGCAATTTTGAAGTTTATACTTTCCTTGTTTGAACAGG  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  ATAGAATCAGCACTAAACAGAAACCAGTACAATTCTCAATAACAAATTATCTCAGTAGAGGTCCAATAACCCTG  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  TGATAAATATGCGCCTGTTCTTCTCCACTGTCTGACCTACTTATGTCTGCATCAAGTATCCCCAAACTGCTCTG  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  TCAGGAATATACACCCGAAGAGCCCTCTGAGAACTGGTTTAACTAGTATTTTGGCTTGTTTTGGGTGCACCTGT  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  GACCTAATTTACAAGACCAAGATTAATTAAATGTTCATGCACAATTAAAAGACAATTTTACTTCAGTAGTATGA  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  TGCTTAATTTCTGCTTATAGAATTCATTTTTTATTAGTTATAAATTATGCTAGATGACATAGAGAGGAATATCA  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  AATGCAGAGGATTCTTAGCCTGAGATCCATGGACCTCAAGTGTTTCACGAACACCTTGAGATAGTTTTCAAAAT  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  GGTATATGTGTGTATCTAGGGGCATCTTTCTGAGAAAGGGATTTCCTAGATTTTATTCAATATGATCTGGAGTC  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  CAGAGCAAAAAAATATTGTACAAATCTTTGCTCTACTAACTTCTTGACATTGGGAATTTGAGGGAGAGGAATTT  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  TCCATCAGCTTTTTGTTTTTTGGGAAATAAATAAAATGACTATGAGCAAACATGAAGACAATTCCCAAACCAAT  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  TCCCAAAGACTGGTACCAGTAGCTCCTGGTGCAGAACCAACTTCAGCATGGCAGGGAACAAAGAAATGTTCAGT  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  TATACTGAGGGCAAAAGGACAATGAGAATCTCCTAAGTTCCTCAAAGTCACTTCTGTTGCTCCCTGATGTTTAC  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  AGTTCAAAGCAGATACTTGTGCTCCTAAAACAAACAACCTTGAAGCCCTGGCCTGATCTATGGTCTCAGCCTAT  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  CCTTCAACTTTTTCTCAGCTCTTCTTTTACTTCCACTATGGTATGGCCACCCAGACAACCAGTCCACAGACTAC  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  GCCCTTATCTTGTATCTCACAATATGTGAAAAGGTTTGGGCCAACACCGTCTTCTAAATACCATCTTCAATCCC  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  TGCCTAAACTCAAATATCCAGCTTATTTCAGCTTCTCAGTTTATCTAGGCTGTTAGCTTCCAGTCACCTGCAGT  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  TTTCCCTAACTTTCTCTGTGTGGGTGTTACTTTATTCACTGTTTTTAGCCAATATCTCATCACTACAAACTGAA  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  ATCTCCACAGGCAGGGCCAGTGCTTAGTGTCCTGCTCAATTCTGTGTCCACAGCACTAAGGGCAGCAGTGGGTG  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  TGGCACAAAAATTTGTCCTTCCTATTTTCAAGTCCGTATACTCTCAGGTCAGTTGTAGGCTGTGCAAGCTGTAC  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  CACTAGGTCTGATATGTGGCTCATTAAGCAAAAACAGGAGAGAATTGTACCAATGCACATTGCAAGCCAGAGTT  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  CTGAATTCATTTTGAAGAAGTAACTTCATTTGGTCACATTTTTGTTCTTATTCCCGTGAGCAATAGTTTCCATT  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  TAATTGGGAAGATATAAAGGAGAGTTCCCATATATCCCCACACTCAGTTTTCCTTATTATTAAAATCTTACATT  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  GGTATGGTACGTTTGTTACAAACAATTAACAAATATGTATACATTATTATTAACTAAAATGAATATGTTAGATT  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  TCCTTCATTTTTACCTAATTTCCTTTCTCTGTTCCAGGATCCTATTCAGAATTCCATGTTATTTTTAGTCATCA  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  TGACTCCCTAAGCTCTCTTGGCTGTGGTAGTTCTTAGACTTTCCTTGATTTTGATGATCTTGACAGTTTTGAAG  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  AGTGTTGAGCAGGCATTTTGTAGAATGTCCTTCAACTAGGATTTGTCTGATATTTTTCTCATCATTAGATCGGA  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  GTTAGGGGTTCGAGGGAGCAAGACCGCAGAGGTAAAGTGGAGGGTTTTTGTTTGTTTGTTTGTTTGTTTTGAGA  2960

Query    1  -----------------------------ATGCAGTGGCGCCATCTCAGCTCACTGCAACCTCCATCTCCCAGG  45
                                         ||||||||||.|||||||.||||.|||||||||||..|||||.||
Sbjct 2961  CAGGGTCTCCCTCTGTCACGCAGGCTGGAATGCAGTGGCACCATCTCGGCTCTCTGCAACCTCCGCCTCCCGGG  3034

Query   46  TTCAAGCGATTCTCGTGCCTCGGCCTCCTGAGTAGCTGGGATTACAGGCGTGTGCCACTACACTCAACTAATTT  119
            ||||||||||||||.||||||.|||||.||||.||||||||.|||||||.|.||||||.||.|....|||||||
Sbjct 3035  TTCAAGCGATTCTCCTGCCTCAGCCTCATGAGCAGCTGGGACTACAGGCATCTGCCACCACGCCTGGCTAATTT  3108

Query  120  TTGTATTTTTAGGAGAGACGGGGTTTCACCCTGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG-------  186
            ||||||||||||..|||||.||||||||||.|||||||||||||||||||||||||||..|||||||       
Sbjct 3109  TTGTATTTTTAGTGGAGACAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTTGCCTCAAGTGATCCA  3182

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3183  CCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGAATAAACCACCATGCTTGACCTAAAGCGCCATTTTTATC  3256

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3257  ACGTTATATCAAGACAATATACTATCAACATGGCTTATCACTGCTGGTGTAATGCTTTTGGGATTTATTCACTG  3330

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3331  CTTACTTTCCCACCCTTTTTCATACTGTATTCTGTAGAGCAATCACTATGCAGAGCCCACAATGAAGGGGTGGA  3404

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3405  GTTATCTGGAATTCTGCTCAGGAGATTCCTTGAAAAACTGAGATTTGTTGCACATCAGGGAAGCTGTAGGGATT  3478

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3479  GGTTTGAAGTCTTCTATTTATTGTTTCTCAAATTGTTTCAGCTTTGACCATTACAGGCATATATTTTTAATTTT  3552

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3553  TTTTTTCAGAGAGCACAGAACTTGGTACAAGCCCTAGCCCTTAGAAATGCTCATCTTAAATTTGTTACATGGAC  3626

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3627  CTTCAGTTTTTCAAAAGCCTCCAGTGGGCTAGATTTTTATTGAAAATGCTTAGGATCCTCATGCTTCTTGTTCC  3700

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3701  CGAGGCTCCTGGAAACCACCTTTAGTTATCCCGTTTGGTAAGAGGGTTTCATTCTGTCTTGCTTTCTGGTAGTG  3774

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3775  AGTGGATCAGAAAGTCATAGGGCTGGGAGAAGATGGACTGGATGAGATATGTACGGATATTCTCTTTGCCACTG  3848

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3849  TACAGCGGCCATTGCAGCTCCTGCCGCAGAGCCCACGGCCCTACGGGCGGGACCCATTTTAACCTGGTAGTGAC  3922

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3923  AGTGCCGCCTCATTGAAGCAGGAAGGATTTTTGTCCATGACACTAGACGTCTCTAAGCAATAAAGTAATTTTGG  3996

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3997  CAGATGCCGATACCTCTCATGTGATCTTGTTGGGAAGGTTCAGATCCTATCACCTGAGATTATTTACTCTTAAA  4070

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4071  GACCCTCTGCCTCCTTCCTCAGCCTTTCTGTTTGACAACATAAGATCGCTTTTATCTCCTGCAATGAACACTCC  4144

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4145  TAGACAAGTCATGTCCGGGTCTTGGTATCAGTAAATTTTTACTGCTGAATATTTTGGGAGAGGTTCTCAGTTAA  4218

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4219  TCCCATTGAGAAAGACCAAGTTAAAGCTTTATCAGTGAGAAACTAATTACAAAATCCTGCCTTGCAAATATTCG  4292

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4293  AGCTTTTAACAGTGCTTTACTCTTTGGTATCCACGAGGTGGAGCCTTCCCGGGAAGCAGAAAGCATCTTTTGGT  4366

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4367  GTCCTGTTTTTTGTTTTTTACCCTCGGCAACGCCACGGGTGCCAGGACTAGTTGACACGCCGCCTCAATTTAAG  4440

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4441  TCATCCATAATTTATACGTTACGAAATGGAACTTTCAAAAGTGTTCCTAGCGTTAGGAGCAAAGAACGCCGGAC  4514

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4515  AAACGCTCGGGAGGCGGCGAGCCTCGCGGTTCTTCCAACAACGCAATCTGTCAGCGCGGCTAGGTTGGTGCCCT  4588

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4589  CTCCCCCTGTATCGGGGCAGCCCGGCTTAGGGCCGCAGAACCGAGGCTGGGGAGCCCCGCAGGCTGTTGCTAAG  4662

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4663  AGTCCAGGGGAGGCACGGACTTACCTTATCTGCCCCTGGAAACAGATTTGCTCTTGGATCTTGCACGAAGAGCC  4736

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4737  CTGTGAGAAACGAAAAGGGAACTTGTGTGATGGCGGCAGATAACGAACATTAGGGTAGAAACTTAGGTTCTTAA  4810

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4811  AGGGAAGACAGCTTGAGTTCGGAAATGAAGATATATTCCTTCAGGAAGGCCTGTTAAAAACACGAGCTATTGCG  4884

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4885  AGGTTCCATGGTGTAATGGTTAGCACTCTGGACTCTGAATCCAGCGATCCGAGTTCAAATCTCGGTGGAACCTG  4958

Query  187  ---------------------------------------------  186
                                                         
Sbjct 4959  TCGTTTCTTCTTGCTTCCTCACTATTTTTTTCTTTCTAAAATAAA  5003

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