Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_15487
- Subject:
- XR_001747992.1
- Aligned Length:
- 6822
- Identities:
- 143
- Gaps:
- 6660
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CACACGTACACACACACACACACACACACACACACACACACTACATATTTTTGATGTTATCTCAAATGTCTCTG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AACCTTTGTTCATTTTTCTCCATTCTTTTTTCCTTTCTATCCCTTAGACTGTATAATATCAATTTACATATCTT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TAATTCACAGATTCTTTCTTCTGCCTGCTCAGATCTGCTGTTGAGCCCTTCTAGTAAATTTTTCATTTCAGCTA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TCATACTACTCAACTCCAGAATTTATATTTGGTTCTTGAAAAAAATATATAATTTCTATCTCCTTGTTGATATT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CATTACCTGATAAGATATTATTCTCATACCTTTTTCTAGTTCTTTGGATATGGTTTTCTTTACTTCTTTGAATG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TATATAGAATAGCTGATTTAAAGTTTTCATCTTATAAGTTCAATATATGGGCTTCAGGGACAGTTTTTATCAAT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TATTTTTTCCCCCGGTGTATGTGCCTTACTTTCTTGTTTCTTTGTGTGCCTCATAATTTCTTATTGAAAACTGC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 ATTTTAAATAACATAATATAATACAGCAACTTTGGAAATAACCTTCTCTCCCTTCCTCAGGGTTTGTTGTTGTT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GATGTTGCTTCTTTGTGTGTTTAGTGACTTTTCTGAGCTAATTCTGCAAAGTCTGTGTTTTTTGTCATGTGTGG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CCACTGAAATCTCTCTCTGCTTAGTGTTCAGCTAGTAATTAGACAGAGAGTTTCTTGATGCTTGAGACCAATAA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GTCACCTTGTTTTTGCAGAGTGGCTCTGTGTGTATGTTGGGACATGCCTTCAACTCTCAGACAGGACATTGACA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 ACTCCACCTTAGCCTTCCTGCTTGTGCAGAGCCTTAAGCTTAGCCCAGGGTGAGAGCTCAGGACCTTCCTTAGT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TTTTCCTGCACATGTGCACAGCCCTGGGCATGTGCACCCTCCTGTGCGTACATATGGCTTTCTATATTCCTTGG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GATATTTCAGAGCCTTTCAAGGCCCTTTATAGATATTTTATTCCCCCACATTTTCTTTTTAAGCTTTTTGTTTA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GCCCTTTTTTTTTTTTTGCCTCAACTGTTATCCATTGTTTTAGGCAGCCACAAAGTCCAACAATTGTCTCTAGT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TGTTTTCAACAAATACCCTTAAGGAAAAAGCTGTTCACTCCAGGCAAGCTTTGAGACAGGTGAAATAAAGACAG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TCTTGCAAATGGTATCTTCCAGGGAACCACTAGACAGGTCAAATAATTACAACTCTCTGGGAATGAGGCTTTGA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 AGGAACTCCAAGGCTGTTCTACCCCTTCTTGTAGCTGCCAGGCTGCTGGTTTCCATGATGATTGTGGTTTGTTG 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GTTTTCAAAGCTACTGCAGAGTTGGGGTGAGGGGGATGGAATTGGAGCAAGTTAAAATGCCACAAGGCTCACTC 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TTCTTTCTATAATTATGTCATTTTTTTTCTTGAACGAAGACTTCCCAGATTGCTATAAACTTTTGATTAATTTC 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 CAGAGTTCTGAAAAAATTGATTCTCACCATTTTTTGCCATTTTTCTCATTGCTTTTAGGGGGGAGGAAATTTTC 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 AGAGGATTTTACTCCTACCATTTTCATTGACATTACGTGCAATATATTTTAATTACCCTTCTTTGTGATTGCTT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TGTCACTTCTCAAAACTCAGTTCAAATGTCTCCTCCATTGCAAAGCCCTCTTCTTTGTATCCTCAGGGCAGCTA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 TTCCTCTATTCTCCTATACCTCTGGGTTTATGTCTTTGTTATTTCACTTTTCATAATAACAGTTACTTACATCT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 GTTTCTATCCCTTTTTCCAGTCTGTAAGCACCCAGTCTGTGACTTGTTCATCCTCCATGCCCAGGCTAGTTTCT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 GACACACGGTAGATATTCAGGTTTGTAGTCTGAAGAGTATTGTCCTAGGAGACCTCAGAGCCTAGCCAAGGGCT 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TCTGAGTTCCAGCCACCATTTCTCTCCTTCTTCTATAATTCACAGCTGACCTCTATCTCTTCATTGTCTTATGT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 GTGCTCTGGTGTGATGAGAGTAAGTTCAGAATTGACACACTGAGTGTATGATATGGTTTGGATCTGTGTCCCAA 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 CCCAAATCTCATGTCAAATTATAATCCTCAATGTTAAAAGTGGACTCTGATGGGAGGTGATTTGATCATGGGAG 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 TGGATCCTTCATGATCAAGAAACCTTCATGATTCATCATCCACTTGGTGCTATTCTCGTGATAGAGTTCTCATG 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 AGATCTGGTTGTTTAAAAGTGTGTGGCACCTCCCCCTTCTCTCTCTTGCTCTTGCTCCTGCCATGTTAGAGGCC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 TTGCTCCCCCTTTTTCTTTCACCATGATTGGAAGCTTCCTGAGGCCTCCCCAGAAGCAGAAGTCACTGTGCTTC 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 CTGTACAGCCTGTGGAACAGTGAGAACTTCTTTTCTCTTGAAATTGTCCAGTCTTAGGTATTTATTTATAGCAG 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 TGCAAGAATTGACTAATACAGTGTATGAGGAAAATAGGGAGCAAAAAGTTAAATCCTGTGTGGGTGACATTCAG 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 CAACAACAACAACAACAACAACAACAATAATAATAGCAGCTACTGTTTGCTGAATACAGTCTGTGCTAGACACC 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 AGGCTATGGGCTTTATAGGCAATATCTCAATGAATTCTGACATCAACCCTATGAGGCATGTACTATTATCCTCA 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 TTTTACAGGTGAGGCTGAGTAAGGGAAGTGGGAGAACTGAGGTTGGATGAAGGCCTGACTCTAAAGCCTATATT 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 CTTAACTGTCCCTTCTGAGGGGTTTTTGAGCAGCCAGTTGGAGGAAAGGAAGCCCCACCTGTGTTTGCCTTCCC 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 CAGGACCTATTCTGCCTCCTTGTCTAAAGAGATGTGCCTGCTCCCAGGTGTGTTTAGCCCCGTGTGGGCTCACT 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 TGGGTCACCTTGTGCTTTGAAACAAGATAGCACTGAGGGCTCCTGCTGCAACTGGCTCCCAGGGCAGACAGGGG 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 TAGAGGCCCCACTTCCCTGGCATTGGGGAGACAGATGTGGCCCTCGGGCAAGAGGTGACAAAGATCTTCCATCA 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 TCACCCCAACAATTCCAACATGGTGACAGCCCCAGACTGCTAGAAAAGCCAACCCACATGGAGGCGAGATAAAA 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 TCCAGAGGGCTCAGAAACATTTCAACAAATGCTAATATCGGTCTCTCCAATACAGCTCTGTCAGCAGGAAGGGA 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 GAATTCTGCCAGCATGCATGCATGGGGCACACTTTTTGGCACAAGGGACCTTGTTGCTAAGCAACAGTAGTTGG 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 CCTCCCCTCCTCCCCATAACCTTTTCCTCTGTTTCTGAGTTTCCAGTTAGCAGATGGGAGGGGCTGGGGTTGCC 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 TAGCCCAGCCCAGCCCTTGTCCCCCTTTCCTGCAACAAGGGGCCTATTCATGGGTCCTCAGCAGAGTTCATTGT 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 CTCTGTGGCGCGTGTCTGTGTGAGTGTTGGAGTAGGGATACAGGGAGGGGCCATGTGCGAACCAGGGAGACCTC 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 ATCTTCCAACCAAGCTTGCTGGGCTAGCTTTAATCAATGCTGGCCTGAGAACAGGAGCGGAACATTGCCTAGTA 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 GACCCTGAGGCTTTACAACAGTGCCACTGACCCCTATGTTTCTCAGGCAGTGTGCTGGCGTTCCATGCGACGTG 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 GCTGTGCAGTGCTGGGAGCCCTGGGGCTGCTGGCCGGTGCAGGTGTTGGCTCATGGCTCCTAGTGCTGTATCTG 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 TGTCCTGCTGCCTCTCAGCCCATTTCCGGGACCTTGCAGGATGAGGAGATAACTTTGAGCTGCTCAGAGGCCAG 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 CGCTGAGGAAGCTCTGCTCCCTGCACTTCCCAAAACAGTATCTTTCAGAATAAACAGCGAAGACTTCTTGCTGG 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 AAGCGCAAGTGAGGGATCAGCCACGCTGGCTCCTGGTCTGCCATGAGGGCTGGAGCCCCGCCCTGGGGCTGCAG 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 ATCTGCTGGAGCCTTGGGCATCTCAGACTCACTCACCACAAGGGAGTAAACCTCACTGACATCAAACTCAACAG 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 TTCCCAGGAGTTTGCTCAGCTCTCTCCTAGACTGGGAGGCTTCCTGGAGGAGGCGTGGCAGCCCAGGAACAACT 4070
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4071 GCACTTCTGGTCAAGTTGTTTCCCTCAGATGCTCTGAGTGTGGAGCGAGGCCCCTGGCTTCCCGGATAGTTGGT 4144
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4145 GGGCAGTCTGTGGCTCCTGGGCGCTGGCCGTGGCAGGCCAGCGTGGCCCTGGGCTTCCGGCACACGTGTGGGGG 4218
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4219 CTCTGTGCTAGCGCCACGCTGGGTGGTGACTGCTGCACATTGTATGCACAGGCAAGTCTCTGTGGCTGCTGAGG 4292
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4293 ACAGAGAGCCTCAGTTGCCCTTTCTGTTCGGCTGTTGGTATGTCCTGTATCAAATGTTCGTGTCCAACTGTCTC 4366
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4367 CAGCTTTTTGCTCCAAAAGGGTAAGACTGGTGTTTGTGAAGTTCTCTCATTCAGTATCAAGAACAGATCTGCAC 4440
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4441 AAATAACAGTAATAATATGAAGATTTGTTCTTTATATTCATCAGTTTTTTTTTTTTTTTTTTGAGACAGAGTCT 4514
Query 1 ---------------------ATGCAGTGGCGCCATCTCAGCTCACTGCAACCTCCATCTCCCAGGTTCAAGCG 53
.|||||||||||.||||..||||||||||||||.||.||||..||||||||||
Sbjct 4515 CACTTTGTTGCCCAGGCTGGAGTGCAGTGGCGCAATCTTGGCTCACTGCAACCTTCACCTCCTGGGTTCAAGCG 4588
Query 54 ATTCTCGTGCCTCGGCCTCCTGAGTAGCTGGGATTACAGGCGTGTGCCACTACACTCAACTAA-TTTTTGTATT 126
|||||.||||||| ||||||| || ||||||...|||.|||| ||||||||||
Sbjct 4589 ATTCTTGTGCCTC------------AGCTGGG----CA--------CCACTATGTTCAGCTAATTTTTTGTATT 4638
Query 127 TTTAGGAGAGACGGGGTTTCACCCTGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG-------------- 186
|||||.|||||.||||||||.||.||||||||.|||||||||||||||||||||||||.|
Sbjct 4639 TTTAGTAGAGATGGGGTTTCGCCATGTTGGCCTGGCTGGTCTCGAACTCCTGACCTCAGGTGATCTGCCTGCCT 4712
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4713 CAGCCTCCCAAAGTGCTGGGATAACAGGCGTGAGCCACCGTGCCTGGCCTCATTAGCTTTTAAGTGTTAAAAAT 4786
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4787 ACTTTCACATTCACAGTATCCTGTGTTTCTTCAGGCTTATCTTTGGTTCAATCATTTTCCATGTAATTATTTGG 4860
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4861 TTAATATGTTTCTTCCCCTTTAGATGGGAAGCTCTGCAGGAGCAGGGACTCTCAGTCTTATTTACCACTAAATC 4934
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4935 TCTTTGTAGATTTATCCACTGCTGTGTCCCCAGGGTCTAGAACAGTCCCTGGAATATAGTAGGTGCTTAATAAA 5008
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5009 TATGACTTGGAGGAATGAATGAATGATGAGTGAATGAGCTCTTTGATCTTCTCTTGGTGCCGGACAGGGCAGAG 5082
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5083 AGTGTAATCCCCATTTTACCGAGGCTGAGAGGGAGAAGTGCCTCTCCCATGATCACACACAGTAAGTTGAGAGA 5156
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5157 TGGGACCAGGGGAAGTTTTTCCAACACAAGGCCCTCTATGTGTTTGTTATAAAACTTGGAGGGAAGTTATGCAG 5230
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5231 GAAAGAGGGAGTGGTGGTTGCAGATGACCCATAGTCTTCTCTATCCATCAGTCCTGCAGCATTTATTAAGCACC 5304
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5305 TACTGCATGCCCAGTGTCTTGCCGGCTGCTGGGGTGATACTAAGAGGCATAGTCTGTGGGGCCTGGGAGCTCAC 5378
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5379 CGCCTGCTGACGGCCCCCCCACCAATGGCTGCTCTGGCCAGCTTCCTCCACCTGCTACCTTGCTTAGGAACACC 5452
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5453 TCTTCTGCCCCTTCCTTCCCCGCTCAGCATGGCCCCTGTGTGCAGTTTCAGGCTGGCCCGCCTGTCCAGCTGGC 5526
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5527 GGGTTCATGCGGGGCTGGTCAGCCACAGTGCCGTCAGGCCCCACCAAGGGGCTCTGGTGGAGAGGATTATCCCA 5600
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5601 CACCCCCTCTACAGTGCCCAGAATCATGACTACGACGTCGCCCTCCTGAGGCTCCAGACCGCTCTCAACTTCTC 5674
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5675 AGACACTGTGGGCGCTGTGTGCCTGCCGGCCAAGGAACAGCATTTTCCGAAGGGCTCGCGGTGCTGGGTGTCTG 5748
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5749 GCTGGGGCCACACCCACCCTAGCCATACTTACAGCTCGGATATGCTCCAGGACACGGTGGTGCCCTTGTTCAGC 5822
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5823 ACTCAGCTCTGCAACAGCTCTTGCGTGTACAGCGGAGCCCTCACCCCCCGCATGCTTTGCGCTGGCTACCTGGA 5896
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5897 CGGAAGGGCTGATGCATGCCAGGGAGATAGCGGGGGCCCCCTAGTGTGCCCAGATGGGGACACATGGCGCCTAG 5970
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5971 TGGGGGTGGTCAGCTGGGGGCGTGGCTGCGCAGAGCCCAATCACCCAGGTGTCTACGCCAAGGTAGCTGAGTTT 6044
Query 187 -------------------------------------------------------------------------- 186
Sbjct 6045 CTGGACTGGATCCATGACACTGCTCAGGACTCCCTCCTCTGAGTCCTGCTGTTTCCTCCAGTCTCACTGCACAC 6118
Query 187 -------------------------------------------------------------------------- 186
Sbjct 6119 CACTGCCTCATGCTTCCTGGGGCCTCCAGCAGCTCCACTAATGGAGGAGAGGCAGTAGCCTCCGACACAGAACG 6192
Query 187 -------------------------------------------------------------------------- 186
Sbjct 6193 CATGGACCTCCTACTACTGTGTGTGAGGAACAGTCACTACCCACTGGCCAGCCACCCAGCCAACAGGTCTCTCC 6266
Query 187 -------------------------------------------------------------------------- 186
Sbjct 6267 TCTTGGGCCCTGATTTCAGAGTCCTCTTTCTCACTAGAGACTCAATGACAGAAGAGAGGCTGGGACTTGGTTGG 6340
Query 187 -------------------------------------------------------------------------- 186
Sbjct 6341 GCATGCTGTGGTTGCTGAGGGATGAGGGGGAGGAGAGAGGTAGGAGCTGGAGATGAAGAGGCTGCTAGAAGCAG 6414
Query 187 -------------------------------------------------------------------------- 186
Sbjct 6415 CAGGAAGCCTGCCCTTCTGCCCTCTCCCCTCCCTGCCCCTGTGTGAGTCTTTTGGGAGGGTGCTGGGAGGTGCC 6488
Query 187 -------------------------------------------------------------------------- 186
Sbjct 6489 CCCCGTCCCACCTTTTTCCTGTGCTCTAGGTGGGCTAAGTGCCTCCCTAGAGGACTCCATGGCTGAGAGGCTCC 6562
Query 187 -------------------------------------------------------------------------- 186
Sbjct 6563 TGGGCAGATGGGGTCAAGGCTGGGCCAGCCCAGATGAAGCCTATGGGAGTCAGGACCCTCTCCACTCTCCCTCT 6636
Query 187 -------------------------------------------------------------------------- 186
Sbjct 6637 CCACTCCCCTTCCTGTTCTCACCTGGCTGTGGCTGGCCCTGTGTGGGGTGGGTACACTGGAAAACAAGAAGGTT 6710
Query 187 -------------------------------------------------------------------------- 186
Sbjct 6711 GGAGTTGGTCTAGGACATTGGTTTTAAATGACAGTTCTGTGAACTGGTCCAAGGAGTTCTGTTATTAAAGTGAT 6784
Query 187 -------------- 186
Sbjct 6785 ATATGGTCTTGGTC 6798
