Nucleotide Global Alignment

Description

Query:
ccsbBroad304_15487
Subject:
XR_001752916.2
Aligned Length:
4768
Identities:
160
Gaps:
4582

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CTAAAAATAATAAATGAATAAAATAAATATATAAATAAAAATTTGACCGACAGCTTAGTAAGGATTATATAGTT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  ATGTCTGCTACTGTTTAAAAAGGCTTTTCTTTTTTTTTTTTCTTTGACATAGAGTCTTACTCTGTTGCCCAGAC  148

Query    1  ----ATGCAGTGGCGCCATCTCAGCTCACTGCAACCTCCATCTCCCAGGTTCAAGCGATTCTCGTGCCTCGGCC  70
                .|||||||||.|.||||..|||||||||||||||||.||||..|||||||||.||||||.||||||.|||
Sbjct  149  TAGAGTGCAGTGGCACGATCTTGGCTCACTGCAACCTCCACCTCCTGGGTTCAAGCAATTCTCATGCCTCAGCC  222

Query   71  TCCTGAGTAGCTGGGATTACAGGCGTGTGCCACTACACTCAACTAATTTTTGTATTTTTAGGAGAGACGGGGTT  144
            |||..|||||||||||||||||..|||||||||.||||....|||||||||.|||||||||.|||||.||||||
Sbjct  223  TCCCAAGTAGCTGGGATTACAGATGTGTGCCACCACACATGGCTAATTTTTTTATTTTTAGTAGAGATGGGGTT  296

Query  145  TCACCCTGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG--------------------------------  186
            |||||.||||||||||||||||||||||||||||..||||||                                
Sbjct  297  TCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGGGCTCAAGTGATCTGACTGCCTCAGCCTCCCAAAGTGGTG  370

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct  371  CTATTACAGGTGTGAGCCACCTCGCCTGACCTAAAAACACTTTTCAGCTCCAATTTTAAACTTAAAATTTTTCT  444

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct  445  TATTTTAAAAACAACATATGCATGTATTATCAAATACAGGAAAATATGAAGAGACAGAAGTACTTACTGATCAT  518

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct  519  AATCCTACCACCAGAGACATCACTATGAATATGTTTGTACATTTTTTTCCTGTGCATTCTAAAACATAGTTAAG  592

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct  593  ATTATGCTAAATATACAGTTCTCATGCTCTTTTATGTCAGAAGTGTTTTCCCATGACATTTTAAACCCCATAGA  666

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct  667  CATAATTTTCTAATGGCTACATACTATTCTATCTAACCATTTCCAGAGGTTGGATATTTATCCAGCTTCTGAGA  740

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct  741  CTTCCTGTTATAAAACAACACTTTGATGAACATCTTGGTACATAAATCTTTTGCATGTGACTACTTCCTTAGGA  814

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct  815  CAGATTCCTAGAAGTGAAATTCTGGGTCAAAGAGTAGTAATATTTTAAAGGCTGTTTATGCATACTGACAAGCT  888

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct  889  GCTTCCTGGCAATTTGTCCAAACTTTTACTCTGACTAGCATTGTATGGGAGCTTCCCTGAGTGAATGCTGCCTT  962

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct  963  TGAAGTGGGGTCAGAGACTGAGGACCAAGGGGCACAGAGAAAGAAGAGTGTGGTCCTCGATGGGAGGACCCATC  1036

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1037  ACAAACCGTCTTGCACAGTGTAAACCCTGGAGAGGGGCTGAAGAAACCACTGCAGCCCGGGGCCGCCCATTCTA  1110

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1111  CCTGGCCCATGGTAGGCACTCAAGAAATGGTTTGCTACGTGAATAAACAAATCCACAAACATATATTTCTGAAT  1184

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1185  TCCTATCATGCGTCAAACACAAGAGATAGGGAGAGAGGAGGAAAAGAAAAGCAAGGGATCATGGGATAAAAGGG  1258

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1259  GACAGTGGCAGTGGGGTGGACAGAAGTCAGAACTAAATTTACCTCATGCTTTAATTCGGCGAGTTTTCTTAGAA  1332

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1333  TAGTCTGACCATTGCTTACGTTGAGGGTCTATAGTCCTCCCTTCCCCACAAGACAAAGTCCAACCTAATTCAGC  1406

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1407  ACCAAGATCCAAGCAGCTTGGAAGATACAGGAGGGAAAATTCTGGTGTAGATTAAGTGCCACCCCCCAGCAATG  1480

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1481  GCCAGGACACAGCAGCAATGTTACCTAAGAAAGCAACTGCGCCTCTTGCTGATCAGCTAGACATGAGGGCAGTG  1554

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1555  TCCTACCTCAGCGGTTTGCAGCGGACATGCTGTCAGGCCATTGGGATAGTTCCCATAAGCCACTCCTGGTTGTC  1628

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1629  ACCACTATTCCAAGTGGGCAGGAGCAGCCTTATTGACTGAGATGGGCGGCTATGGACACACATGGGTGTACGCA  1702

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1703  TGTGATGGAAATGGGGGCTTGGGGCCCTGAGGGTCCACAGGGGCTGCGTGGTCAGGGAGGGTGGGCATGGCATC  1776

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1777  ACAGGCACCCCAGGGGAGAAGCTGGCTTTCTTCCCATACTTTTGGCACTGTTTTCTGTTTTGTTTGCCTTCAAA  1850

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1851  GAGCAAGTGATGGCTGGACAGCAAAGAGGAGTGGAGGCCGGGAGAATGGGCAGCTAGCCCAGCGCTCTCCAATA  1924

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1925  TCTGGGAGTCGACCGCACTCCTGCACTCCCTGTCATCCCTGCTAATGGTGAGGAACTGAGCAAAAGAGCCTCCA  1998

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1999  GAGTGACAGGTGACTTAAAGCGCACGTGGCTCTACATTTACAATTGAAGTGGGCTTTGGAGATTGCAGATTCTG  2072

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2073  AATACCTGCTGGGGTGGTACAGAGGCTGTGTTCTGGTTTTGCCATCTTGGACAGGGGGTTGGGAGTCTGGGGGG  2146

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2147  CTGCCTTCTCTCCTCTTCGTGCAGCTCTGCTGGGGCCTGTCTCACACTTGTGAGCAGAGTTATGGCTGGATTCC  2220

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2221  AGGGGAGACAGAGCTTGGTTGTGAAATGTAAGGTTGTGAAATGAAGGGCTTGTGAAATGAACAAAGAATGTATT  2294

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2295  TAAGGGTCTTTCATTTTAAATCGAACACTTACATAGCACTTACTACTTGCAAAGCTCCACTCTAAGCACTTTAC  2368

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2369  CCATCTTAATTCATTTAATTCTCTTCTCAACCCTAAAAAGCAGGTATTACCATTGCTCCAATCTTACAGATGAG  2442

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2443  GAAACTCAGGCATGGAGAGGTTGAGCGACTTGCCCAAATTCATGCAGTTAGGACCTGGCAGAGCTGCGCTTTGA  2516

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2517  ACCCAGGCTGCCTGGCTCTAGAGTGTGTGCACGAAACTTCACTGCCATATGAACAAAACTGCAGGACATATGTT  2590

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2591  CTCAAAGCAAATAAGCCTCCCAGAGAGGCTTTTCCTGATGGCTTCAAGGACCTGCCCTAGCCTGGTCTGACTTC  2664

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2665  CCAGAGGGGATCCAGTCCCAACATTGGCCCTATCTTTAGACCACATTTCCATCCCATTCTCAGTGAAAACCCTG  2738

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2739  AGTCATGACAGAAGACAACCAATGCTGGAGAGAGGAGGTTTCAGGAGGACAACAGTCAGAATACCCCCAAGACG  2812

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2813  TCCTTCTTTCCCTAAGGTCTCAAAATCCTTGCCTCAAGAAGTTATTCCTGAAGTCTAGCTTGAATTCCTCCAGA  2886

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2887  TAGAGTTTAAACCAGACAAACAGCCTACGAACATGTTACAATATTCAAAAACTTCTAATTTAGTCACCATCACT  2960

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2961  TGCAAATAGGGATATCTCATGGAAATACGATTTCTGATTTATCTTGAAAAGTCAAGATGATCTGGCCACAATGG  3034

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3035  GCCTGCACTCCTGTGAGGTGGTATCATTGGCTTGGGGGTCTCACCAGTGCCACCCTGCATGGGGGCACCGGGTG  3108

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3109  ACATGATGCTCGATTGAGCTTTCCCTCCAGGCTGGGTAATCAGAGGCCAGGCCCTGTGTGTCTTCCAGGGGATG  3182

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3183  CTGTCCTGATCCAGGCTGGTGAGGCAAGGAGGGGCTGCGGCTTCCTGAGCTCTCCGAGCTGCTAATGTGCGTGG  3256

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3257  GGAATGCTAAGCAGCCTCCAGGCTCTGACCAGGTTTGTCTTCTAGGACCCACTTGCCCAATGGGTGCCAGGACA  3330

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3331  CCAGGTCTGGGTCTGGAGAAGAGAATTCTTCTCCAAGGGATGTTGATGGTCCATTCCGGAAATGAAAGCTTCCC  3404

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3405  ACGGTCTGCCCTGCACCAGGCTTTCATCAGTGAGAAATACCCCGAATTTACACCCAAACCTAAAAGGAGAAGCG  3478

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3479  TAGAAGTGTTCTTGGCCCAATTCTTTTAATTGCAAGTCCTACTAGCAGGACAACTAAGGGATTATCCCTAAACT  3552

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3553  TTCATTTAAAAGTCTGGGGAGGGAAGGAAGGAGTAAAAACTTTGGCAGTCAGATTTTTCTCACTTTCACATTTA  3626

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3627  TTCTTTACTATTAATGACTTGTTCATCATGCTGTACAACAATTGTGCAAAGATGCATACGTTTGCCACTATAAT  3700

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3701  TTGCCATTAAAATGTAATAATCAGTAAGTATACACGGCGTGCCAGGTGCTAAACAGCAGATGAGGGGCGAGGTG  3774

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3775  GGTGAAGGTTCCATGCCGTGAGTTTGTGGCTAATGGAACCCCTCATGCTGCTGCTATCCTTCCTGGGCCCAGCA  3848

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3849  GTTGGATCCTGCAGGGGTGCCCCACTCTCTCGGGGACCTCAGAAATGTCCTCTATGGTTAGGGACGGCTAAGGA  3922

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3923  GGGTGTATCTGCAGGATTCCCAGGCACTGGGAGGTGTATAGAGGTCACAGGACCCATACAACCACCCCAGACCT  3996

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3997  TGTCAGAGTGCTCCAGTCTGGCATCCGCAGAAGGCCAGGGAGGGTCAAGGGGCAGTGCTGAGCCACTGAACACA  4070

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4071  GCCACAGAGTTGGAGCTGCCAGGCAGAAGGTGCACGGCTCAGCAGAGGAGACCCCTTGAGGCAGCAATGCTGGG  4144

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4145  GCCGGAGGGTCAAGGCTGAGGAGAAGGCCACCGCAATGCCCTGTGTGGCCCTCATGAGCTGAGGGACCATGGGA  4218

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4219  AGGTGGCCTAGCCACTCTGAGCCTCAGTTTCCCCGGGAGATAAAAACAGAGACAGTATCTGCAAACTCAACAGG  4292

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4293  GCATTATGGTGAAGAAATGAGAGGACTCAGGAACATGTTAGCTGTCACAGCCTTAGCCACTGCCAACTCCAGCC  4366

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4367  AGGCAGCTGGTCAACATTGCCGAGCACCAGCCAGGTGACAGGAGGACAGAGGGCTCGGGGGAAACCAAATCCAT  4440

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4441  CCCCCCAAACAAAAGAAAAACACAAACAAAAATAGGCACCAGAGCCGCCGGACGTGTACAAAGACTGTGTACGT  4514

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4515  TCTGCCTGTGGACAGAGCCCAGGAAGAGCACCCTGGCTCCTGTGCTCCACGCCTGCAGCTCATCTGGAAGGTTC  4588

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4589  CCTGTCTATGGCAGCCAGGTACCCAGGCCAGCCTGCAAAGGCCCAGTAACAGAACTTGTGTCTAAGATAGAACT  4662

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4663  TCATAGCTTTGTGCTGCCAAGCCCACCTGGAGCCCCCTTTAAGCCTTCTTTTGTTTGTTTGTTTGTTTGTTTTG  4736

Query  187  --------------------------------  186
                                            
Sbjct 4737  AGACAGGATCTCATTCTGTTACTCAGGCTGGA  4768

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