Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_15487
- Subject:
- XR_001756629.2
- Aligned Length:
- 4373
- Identities:
- 160
- Gaps:
- 4187
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CTAAAAATAATAAATGAATAAAATAAATATATAAATAAAAATTTGACCGACAGCTTAGTAAGGATTATATAGTT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 ATGTCTGCTACTGTTTAAAAAGGCTTTTCTTTTTTTTTTTTCTTTGACATAGAGTCTTACTCTGTTGCCCAGAC 148
Query 1 ----ATGCAGTGGCGCCATCTCAGCTCACTGCAACCTCCATCTCCCAGGTTCAAGCGATTCTCGTGCCTCGGCC 70
.|||||||||.|.||||..|||||||||||||||||.||||..|||||||||.||||||.||||||.|||
Sbjct 149 TAGAGTGCAGTGGCACGATCTTGGCTCACTGCAACCTCCACCTCCTGGGTTCAAGCAATTCTCATGCCTCAGCC 222
Query 71 TCCTGAGTAGCTGGGATTACAGGCGTGTGCCACTACACTCAACTAATTTTTGTATTTTTAGGAGAGACGGGGTT 144
|||..|||||||||||||||||..|||||||||.||||....|||||||||.|||||||||.|||||.||||||
Sbjct 223 TCCCAAGTAGCTGGGATTACAGATGTGTGCCACCACACATGGCTAATTTTTTTATTTTTAGTAGAGATGGGGTT 296
Query 145 TCACCCTGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG-------------------------------- 186
|||||.||||||||||||||||||||||||||||..||||||
Sbjct 297 TCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGGGCTCAAGTGATCTGACTGCCTCAGCCTCCCAAAGTGGTG 370
Query 187 -------------------------------------------------------------------------- 186
Sbjct 371 CTATTACAGGTGTGAGCCACCTCGCCTGACCTAAAAACACTTTTCAGCTCCAATTTTAAACTTAAAATTTTTCT 444
Query 187 -------------------------------------------------------------------------- 186
Sbjct 445 TATTTTAAAAACAACATATGCATGTATTATCAAATACAGGAAAATATGAAGAGACAGAAGTACTTACTGATCAT 518
Query 187 -------------------------------------------------------------------------- 186
Sbjct 519 AATCCTACCACCAGAGACATCACTATGAATATGTTTGTACATTTTTTTCCTGTGCATTCTAAAACATAGTTAAG 592
Query 187 -------------------------------------------------------------------------- 186
Sbjct 593 ATTATGCTAAATATACAGTTCTCATGCTCTTTTATGTCAGAAGTGTTTTCCCATGACATTTTAAACCCCATAGA 666
Query 187 -------------------------------------------------------------------------- 186
Sbjct 667 CATAATTTTCTAATGGCTACATACTATTCTATCTAACCATTTCCAGAGGTTGGATATTTATCCAGCTTCTGAGA 740
Query 187 -------------------------------------------------------------------------- 186
Sbjct 741 CTTCCTGTTATAAACAACACTTTGATGAACATCTTGGTACATAAATCTTTTGCATGTGACTACTTCCTTAGGAC 814
Query 187 -------------------------------------------------------------------------- 186
Sbjct 815 AGATTCCTAGAAGTGAAATTCTGGGTCAAAGAGTAGTAATATTTTAAAGGCTGTTTATGCATACTGACAAGCTG 888
Query 187 -------------------------------------------------------------------------- 186
Sbjct 889 CTTCCTGGCAATTTGTCCAAACTTTTACTCTGACTAGCATTGTATGGGAGCTTCCCTGAGTGAATGCTGCCTTT 962
Query 187 -------------------------------------------------------------------------- 186
Sbjct 963 GAAGTGGGGTCAGAGACTGAGGACCAAGGGGCACAGAGAAAGAAGAGTGTGGTCCTCGATGGGAGGACCCATCA 1036
Query 187 -------------------------------------------------------------------------- 186
Sbjct 1037 CAAACCGTCTTGCACAGTGTAAACCCAGGAGAGGGGCTGAAGAAACCACTGCAGCCCGGGGCCGCCCATTCTAC 1110
Query 187 -------------------------------------------------------------------------- 186
Sbjct 1111 CTGGCCCATGGTAGGCACTCAAGAAATGGTTTGCTACGTGAATAAACAAATCCACAAACATATATTTCTGAATT 1184
Query 187 -------------------------------------------------------------------------- 186
Sbjct 1185 CCTATCATGCGTCAAACACAAGAGATAGGGAGAGAGGAGGAAAAGAAAAGCAAGGGATCATGGGATAAAAGGGG 1258
Query 187 -------------------------------------------------------------------------- 186
Sbjct 1259 ACAGTGGCAGTGGGGTGGACAGAAGTCAGAACTAAATTTACCTCATGCTTTAATTCGGCGAGTTTTCTTAGAAT 1332
Query 187 -------------------------------------------------------------------------- 186
Sbjct 1333 AGTCTGACCATTGCTTACGTTGAGGGTCTATAGTCCTCCCTTCCCCACAAGACAAAGTCCAACCTAATTCAGCA 1406
Query 187 -------------------------------------------------------------------------- 186
Sbjct 1407 CCAAGATCCAAGCAGCTCGGAAGATACAGGAGGGAAAAATCTGGTGTAGATTAAGTGCCACCCCCCAGCAATGG 1480
Query 187 -------------------------------------------------------------------------- 186
Sbjct 1481 CCAGGACACAGCAGCAATGTTACCTAAGAAAGCAACTGCGCCTCTTGCTGATCAGCTAGACATGAGGGCAGTGT 1554
Query 187 -------------------------------------------------------------------------- 186
Sbjct 1555 CCTACCTCAGCGGTTTGCAGCGGACATGCTGTCAGGCCATTGGGATAGTTCCCATAAGCCACTCCTGGTTGTCA 1628
Query 187 -------------------------------------------------------------------------- 186
Sbjct 1629 CCACTATTCCAAGTGGGCAGGAGCAGCCTTATTGACTGAGATGGGCGGCTATGGACACACATGGGTGTACGCAT 1702
Query 187 -------------------------------------------------------------------------- 186
Sbjct 1703 GTGATGGAAATGGGGGCTTGGGGCCCTGAGGGTCCACAGGGGCTGCGTGGTCAGGGAGGGTGGGCATGGCATCA 1776
Query 187 -------------------------------------------------------------------------- 186
Sbjct 1777 CAGGCACCCCAGGGGAGAAGCTGGCTTTCTTCCCATACTTTTGGCACTGTTTTCTGTTTTGTTTGCCTTCAAAG 1850
Query 187 -------------------------------------------------------------------------- 186
Sbjct 1851 AGCAAGTGATGGCTGGACAGCAAAGAGGAGTGGAGGCCGGGAGAATGGGCAGCTAGCCCAGCGCTCTCCAATAT 1924
Query 187 -------------------------------------------------------------------------- 186
Sbjct 1925 CTGGGAGTCGACCGCACTCCTGCACTCCCTGTCATCCCTGCTAATGGTGAGGAACTGAGCAAAAGAGCCTCCAG 1998
Query 187 -------------------------------------------------------------------------- 186
Sbjct 1999 AGTGACAGGTGACTTAAAGCGCACGTGGCTCTACATTTACAATTGAAGTGGGCTTTGGAGATTGCAGATTCTGA 2072
Query 187 -------------------------------------------------------------------------- 186
Sbjct 2073 ATACCTGCTGGGGTGGTACAGAGGCTGTGTTCTGGTTTTGCCATCTTGGACAGGGGGTTGGGAGTCTGGGGGGC 2146
Query 187 -------------------------------------------------------------------------- 186
Sbjct 2147 TGCCTTCTCTCCTCTTCGTGCAGCTCTGCTGGGGCCTGTCTCACACTTGTGAGCAGAGTTATGGCTGGATTCCA 2220
Query 187 -------------------------------------------------------------------------- 186
Sbjct 2221 GGGGAGACAGAGCTTGGTTGTGAAATGTAAGGTTGTGAAATGAAGGGCTTGTGAAATGAACAAAGAATGTATTT 2294
Query 187 -------------------------------------------------------------------------- 186
Sbjct 2295 AAGGGTCTTTCATTTTAAATCGAACACTTACATAGCACTTACTACTTGCAAAGCTCCACTCTAAGCACTTTACC 2368
Query 187 -------------------------------------------------------------------------- 186
Sbjct 2369 CATCTTAATTCATTTAATTCTCTTCTCAACCCTAAAAAGCAGGTATTACCATTGCTCCAATCTTACAGATGAGG 2442
Query 187 -------------------------------------------------------------------------- 186
Sbjct 2443 AAACTCAGGCATGGAGAGGTTGAGCGACTTGCCCAAATTCATGCAGTTAGGACCTGGCAGAGCTGCGCTTTGAA 2516
Query 187 -------------------------------------------------------------------------- 186
Sbjct 2517 CCCAGGCTGCCTGGCTCTAGAGTGTGTGCACGAAACTTCACTGCCATATGAACAAAACTGCAGGACATATGTTC 2590
Query 187 -------------------------------------------------------------------------- 186
Sbjct 2591 TCAAAGCAAATAAGCCTCCCAGAGAGGCTTTTCCTGATGGCTTCAAGGACCTGCCCTAGCCTGGTCTGACTTCC 2664
Query 187 -------------------------------------------------------------------------- 186
Sbjct 2665 CAGAGGGGATCCAGTCCCAACATTGGCCCTATCTTTAGACCACATTTCCATCCCATTCTCAGTGAAAACCCTGA 2738
Query 187 -------------------------------------------------------------------------- 186
Sbjct 2739 GTCATGACAGAAGACAACCAATGCTGGAGAGAGGAGGTTTCAGGGGATGCTGTCCTGATCCAGGCTGGTGAGGC 2812
Query 187 -------------------------------------------------------------------------- 186
Sbjct 2813 AAGGAGGGGCTGCGGCTTCCTGAGCTCTCCGAGCTGCTAATGTGCGTGGGGAATGCTAAGCAGCCTCCAGGCTC 2886
Query 187 -------------------------------------------------------------------------- 186
Sbjct 2887 TGACCAGGTTTGTCTTCTAGGACCCACTTGCCCAATGGGTGCCAGGACACCAGGTCTGGGTCTGGAGAAGAGAA 2960
Query 187 -------------------------------------------------------------------------- 186
Sbjct 2961 TTCTTCTCCAAGGGATGTTGATGGTCCATTCCGGAAATGAAAGCTTCCCACGGTCTGCCCTGCACCAGGCTTTC 3034
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3035 ATCAGTGAGAAATACCCCGAATTTACACCCAAACCTAAAAGGAGAAGCGTAGAAGTGTTCTTGGCCCAATTCTT 3108
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3109 TTAATTGCAAGTCCTACTAGCAGGACAACTAAGGGATTATCCCTAAACTTTCATTTAAAAGTCTGGGGAGGGAA 3182
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3183 GGAAGGAGTAAAAACTTTGGCAGTCAGATTTTTCTCACTTTCACATTTATTCTTTACTATTAATGACTTGTTCA 3256
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3257 TCATGCTGTACAACAATTGTGCAAAGATGCATACGTTTGCCACTATAATTTGCCATTAAAATGTAATAATCAGT 3330
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3331 AAGTATACACGGCGTGCCAGGTGCTAAACAGCAGATGAGGGGCGAGGTGGGTGAAGGTTCCATGCCGTGAGTTT 3404
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3405 GTGGCTAATGGAACCCCTCATGCTGCTGCTATCCTTCCTGGGCCCAGCAGTTGGATCCTGCAGGGGTGCCCCAC 3478
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3479 TCTCTCGGGGACCTCAGAAATGTCCTCTATGGTTAGGGACGGCTAAGGAGGGTGTATCTGCAGGATTCCCAGGC 3552
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3553 ACTGGGAGGTGTATAGAGGTCACAGGACCCATACAACCACCCCAGACCTTGTCAGAGTGCTCCAGTCTGGCATC 3626
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3627 CGCAGAAGGCCAGGGAGGGTCAAGGGGCAGTGCTGAGCCACTGAACACAGCCACAGAGTTGGAGCTGCCAGGCA 3700
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3701 GAAGGTGCACGGCTCAGCAGAGGAGACCCCTTGAGGCAGCAATGCTGGGGCCGGAGGGTCAAGGCTGAGGAGAA 3774
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3775 GGCCACCGCAATGCCCTGTGTGGCCCTCATGAGCTGAGGGACCATGGGAAGGTGGCCTAGCCACTCTGAGCCTC 3848
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3849 AGTTTCCCCGGGAGATAAAAACAGAGACAGTATCTGCAAACTCAACAGGGCATTATGGTGAAGAAATGAGAGGA 3922
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3923 CTCAGGAACATGTTAGCTGTCACAGCCTTAGCCACTGCCAACTCCAGCCAGGCAGCTGGTCAACATTGCCGAGC 3996
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3997 ACCAGCCAGGTGACAGGAGGACAGAGGGCTCGGGGGAAACCAAATCCATCCCCCCAAACAAAAGAAAAACACAA 4070
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4071 ACAAAAATAGGCACCAGAGCCGCCGGACGTGTACAAAGACTGTGTACGTTCTGCCTGTGGACAGAGCCCAGGAA 4144
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4145 GAGCACCCTGGCTCCTGTGCTCCACGCCTGCAGCTCATCTGGAAGGTTCCCTGTCTATGGCAGCCAGGTACCCA 4218
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4219 GGCCAGCCTGCAAAGGCCCAGTAACAGAACTTGTGTCTAAGATAGAACTTCATAGCTTTGTGCTGCCAAGCCCA 4292
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4293 CCTGGAGCCCCCTTTAAGCCTTCTTTTGTTTGTTTGTTTGTTTGTTTTGAGACAGGATCTCATTCTGTTACTCA 4366
Query 187 ------- 186
Sbjct 4367 GGCTGGA 4373
