Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_15487
- Subject:
- XR_002956669.1
- Aligned Length:
- 5559
- Identities:
- 163
- Gaps:
- 5378
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AACTCTTGGCCTCAAGTGATTCTCCAGCCTTGGCCTCCTAAGGTACTAGGAGGCATGAGCCACCACAACTGGCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AATAGAGATCTTTTTGTTCTCCAATTTTGCCATGCTAATTAATAGAGATACTAGGTGTGGTGGACTAAATGGTG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 ACCAAAAAGACATGGCCTAATCCCCAGAACCCATTACTATTCCCATATATAGTAACAGACTGAATATTACCTTA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TAGGGCAAAATATGTAGTTAAGAATTTTAAGGGCCAGCATGGTGGCTCATGCCTGTAATCCCAGCATTTTGGGA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GGTAGAGGTGGGTGAATCACCTGAGGTCAGGAGTTCAAGCCCAGCCTGGCCAACATGGCGAAACCCCATCTCTA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CTAAATATACAAAAATTAGCCAGGTGTGGTGGCCTGCACCTGTAATCCCAGCTACTCAGGAGGCTGAGGTAGCT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TGAACCCAGGAGGCAGAGGTTGCAGTGAGCCAAAATTGTGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGAC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TCCATCTCAAAAAAAAAAAATTGAGAGGAGTGTTATCCTAGATTTTCCAGGTGAGCTCTAAATCCAGTAACAAG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TGTCTGTACAAGAATGAGGCAAAGAAAGATAACACAGATAGGAGGAAGCAATGCCACCATGACGACACAGACTG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GAATGACACCGTTAACAGCTGAGGATGCCAAGAACCACCAGAAACTGGACGAGGCAAAAACAGATTCTCCTCTA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GAGCCTCTAGAGAGAGTATAGCCCTGCTGACACCTTGATTTTCTTCTGACCTCCAGCACTGTGAAAGAATAAAC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TTCTGTTGTTTAAGCCACCCAGTTTACAGTAATTTGTTGTAGCAGTCATATTTTAAGAAGAAAACTGGGGGAAT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AAATTTGGTGTAAGGAAATGTTATAGGAAATCTAGGTCCACCTGCCTGGTTATGGTGACAAAGGGTGAATACTT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TCCTAAGTTAGCAACATCAGAAACATCTTTAAAGTCTTTTTCTACATGAATTTCCTTATTGGTTGCAGTGATTT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TAAAATATGTCCACAAATTATTTAATTATACCCCCTCCAAAAGTTGGAGCCTAATTCTCCTCCCTTTGAGTATG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GATTATATTTATTGGCTTACTTCTAACAATACAATGTGGCAGAAGTGACCGTTTGTGACTTCCAAAATTAGGAC 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 ATAAAAGACTTTGTGGCTTTCTCCTTGTTCTTTGACTTAGATTATTCGCTCTGGGAGAAGCCAGCTGTTGTGTC 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 ATAAGGATACTCAAGCTGCACTATGCAATGTCCACATGGCAAAAACTCAGTCCTCTTGCCAACAGGAAACCCAA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GAACTTGGGCTATCTGAGCACAGTCAGCCTTAAAATGACTGTAGTTCGGGGCCGGCCTTCAAGCGTCAGCAACG 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CAAGACGGCAGCCACCATGGGCTCGGGAGTAAAAGTCCCTCACAATTTCTGACTGTTGGAAGAACTCAGAGAAG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GCCAGAAAGGAGTAGGAGATGGCACAGTTAGCTGAGGTCTAGAAGATGATGAAGACATGACAAAAGATGGACAG 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GGATGATAATTGGGCCTCCAAGAACAATTTATGAAAACCAAATATACAGCCTTAAAATAGAATGTGGACCTAAA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TACCCACTAGCACCCCCCTTTGTAAGATTTGTAACAAAAATTAATGTAAATGGAGTTAATAGTTCTAATGGAGT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 AGTGGACCCAAGAGCCATATCAGTGCTAGCAAAATGGCAGAATTCATATAGCATCAAAGTTGTCCTGCAAGAGC 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TTCAGTGCCTATTGATGTCTAAAGAAAATATGAAACTCCCTCAGCCACCGGCAGGACAGTGTTACAGCAATTAA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TCAAAAAGAAAAACCACAGGCCCTTCCGCTTCCCCCCGCCCGATTCGATTTAAGCAGTCTTCGTTTTCCACAGT 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 AGTAAATTTTCTAGATACATCATGTAGACCTCAAAGTACTGGAAAGGAAGCTCCAATTCAAAGGAAATTTATCT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TAAGATACTGTAAATGATACTAATTATCCATTTGAAATATATAAGTTTTGCTATAACAAATCATCCTATCAAGT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 GTAACCACTGTCCACGTAGTTGAACTTCTGGAATCGAGAAATTCTAATTAAATTGATTCCCATCATAACTAGTG 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 GGGCATATCTAACTCAACTGTGAAAAGAAACATCACACAATCACCTTGCTGATTACATGGCCTGGGGGTCTCTG 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 CCTTCTCCCCTTACCCTCCTGCCTCCCACCCTCCCTGCAACAGCCCTCTAGCTTGGCTTGTTAGAGTGGATGTG 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 AAGGTTTCAGGTTGCAGCCTGTGGGACTACTGCTAGGTGTGTGGGGTGCTTCACCTGCACCCCTGGTTTCTTTA 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 AGTCTTATGCACCTTCCAATCCGTCATCCTGTCCCCACACTCCTCCACTCCTGCCTTTGGCAGAAGCATAGGTT 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 GTAACCCCTCCGCTCCCCTCTAAGATTGGCCTTTGGTAAGGAATTCAGGGCTTTCCCAGTATCTTCTCTCCCCC 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 ACCTTTATCGAGGGATGCTGTTTTTTCTTCCCTCCTCAAGTTGCTTTCTGCACCATCACCACTCAATACCTTCC 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 ATGACACTTCCTTGCTTTGGGCAGAAGCCATCAGGTAAGGTTAGAAAGTCTCTAACCTCCCTTGTTTAGTTTTG 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 GAACCATACTTATTCATTCTCCATCAGCCTGGGAAATGAATATTGGGTTTTCAGCCCTGCCACCCTCTGCTGTC 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 GTCAGCTGATGCGTTGTTTTTAGCTCAGGTTTTGATAAGGTGAAAAGGAAAGTCACCAGGGTTACTCAGACCTG 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 CCAGCTCTCGGAGTCCTTGGTGGTTGAAATTGGAGAAAGACCACAAGAAGACACTTGTAAGCACACGTGATCCC 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 TCTGAATTGTTTTACTTCCTGTAATTGCTTTTGCTTTTAAAAACTGAAGAAGTTTTAAACAGGGCTTTCATTTG 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 GTCATCCTTGCAATCCATTGAGGTCTAGTTTGGAATCTGACAACTGGAACAAAAAGAACCTTGAATCCAGTGCG 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 TGCCTTGGTTTTGGTGCTGCTGCTGCTTCTCAAGATCCTCAGCAGGGATTAAGAAAGAACCCAGTGTGCATAGC 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 AGATCCCTGAAATTGGCGGGCTTGACCTCCTGGGAAATTGGTGCGTCTTTCCACTTTCTGTTCAGGACCATTAA 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 ATGCTGAAATGTGGATGCATACCGAAATAAAAGTAATTCATTGTGTAAAAAAATAAAATAACTCTAGTTCAGGA 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 TGACATCTTGACTGCAACCTCATGAGAGACCCTGAGCCAGAACCCCCTAGGTAAGCTGCTCTTAAATTCCTGAA 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 CCACAGCAGAAATTATGAGATAATATTTAGTGCTTTAATCTACCAGATTTTGAGGTAATTCCCCCCCTTTTTTT 3404
Query 1 ----------------------------------------------------ATGCAGTGGCGCCATCTCAGCT 22
|||||.|||||..|||||||||
Sbjct 3405 TTTTTTTTTTTTTTTTTTGAGATGGAGTTTTGTTCTTCTCACCCAGGCTGGAATGCAATGGCGTGATCTCAGCT 3478
Query 23 CACTGCAACCTCCATCTCCCAGGTTCAAGCGATTCTCGTGCCTCGGCCTCCTGAGTAGCTGGGATTACAGG--C 94
||||||||||||...|||||.|||||||||.||||||.||||||.|||||||||||||||||||||||||| |
Sbjct 3479 CACTGCAACCTCTGCCTCCCGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTCC 3552
Query 95 GTGTGCCACTAC---ACTCAACTAATTTTTGTATTTTTAGGAGAGACGGGGTTTCACCCTGTTGGCCAGGCTGG 165
||||.|| .||||.|||||||||.|||||||||.|||||||||||||||||.|||||||||||||||
Sbjct 3553 -----CCACCACCATGCTCAGCTAATTTTTATATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGG 3621
Query 166 TCTCGAACTCCTGACCTCAAG----------------------------------------------------- 186
||||||||||||||.||||.|
Sbjct 3622 TCTCGAACTCCTGAGCTCAGGTAATCCATCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACC 3695
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3696 GCACCTGTCCTTGAGGTAATTCTTAACACAAATAACTAATACACTGATGCACCTTCTAAATAAAGTGCCATTTT 3769
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3770 TGTTCAGGAGGCCTTAGCATAACAAATATCACAATCCTATGAATCTCTAGAAGTTGTCATGTACTAGATGATTA 3843
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3844 CTGACATCAACACAAGTTATAATACCTTAAGAATGATACCATTCATTCAGTACTTCATATGTATATGAATTTTA 3917
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3918 CCAGCACAGAAACTTAGCCTAGGAATCTGTCTAGTTCTCCTATTATTAACATCATACATGAGTATGGTACATTT 3991
Query 187 -------------------------------------------------------------------------- 186
Sbjct 3992 GTAATGATCAATGAGCAAATATCAATCCATTATTACTAACTAAATTCATACTTTATTCAAATTTCCTTACTTTC 4065
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4066 TCTTTATTCTCTAAAGTTCTGTGAATCCATGGTCCTATATCTGCACTAATTCACTTGTGTTTTTTCTATATACT 4139
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4140 TCTGCATCTAAAATACTATTTTTACTAGATTTTTTACCAGACTAATTTCATTGAATGTCTTCCAAAGTATGAAC 4213
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4214 ACTTTTATTTTAAAGTTTTCTTAATATCCTCATGGTAACATCAAAATTTAAGGAAATCTGCTTGTCATCAAAAA 4287
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4288 GGGTTTTGGTAATGCTTTGTTAGATTTGCAAACTTTTCATATTATTTGCTCTTACATCACTTCCATGCTATTTC 4361
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4362 CTTTGCTTTTAGTGTATTAATTTTGTTCAAAATGGTAAAATAAAAGAAATATTTATACATTATATTTTTAAGTA 4435
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4436 TCTATTTCCTTAATCTAAGGTAAACTTTTCTCAAGGCATTTTAACTTAACAGGATATTACATAGAAAAAAATAG 4509
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4510 GGGAATAATATCTGACACACTTCAAATGTTCTTTGAACTTTGTTAGTTTAGTGTCAGTTATTGACTGCTTGAAT 4583
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4584 TGGAGAACCCCCTGCTCATATCAGTAACAGCTAGTCAAAATTATCAAGAACATTAAGAACACATCACAGAAATC 4657
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4658 ACTGTCATCAGTTATAGATAGAAAGGAAGATTGCACAGTGAGATGATGTATTCAATAGAAGGTTGTGTGTAGTA 4731
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4732 AAAATAAGAATTGTAAATGTAAGTCAACAGTAAATCCAAAAGCCATGTCTTTCCAGGGAAATCTAAAAACTATG 4805
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4806 TTTCCTACTTTCAAAATCCTTTCATCATTACAAGAGTTATTCTTTTCTGGTTCAAAAATCTTGCCTACCTCCTT 4879
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4880 TTAAAAGTTATTCTTTAAAACATTAGGCCAGATGAGCTAATTTCAGACAGCTTATTTACCTGCTCATGGATTTA 4953
Query 187 -------------------------------------------------------------------------- 186
Sbjct 4954 TATGCCACCTGCTTTTGCTTTTTCTACAGATGCAAAGTCAACCTCTGGGGCAAAATTCCACCTTTCTCTTTCTG 5027
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5028 CCACACAAGTGGTAAATAACATGACCCAATAAATTTTAGCATTTCCCCAAATGTGTAGGATACAAAAAATGTAT 5101
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5102 TCATTCATGTGAGATATAAAAATGTACACTCACACTTCTGAAATCAACAGCCAGCCATTTCACACTTGGGCCAA 5175
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5176 AGGCAAACAAACATAATTCTCACTGGCAGCTGGACAACATTCCGAGCTGCCACCACATTAATTAACTCACCTCA 5249
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5250 ATCAGATTCCACTTCAACTTGCACAGCTTGCTGCCAAGAAGCCTAGCAATAAATTGTTAGGTTAAATACTGAAC 5323
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5324 AAGGTAGGGAAATACCATATGGTATGTTGTTATAGAGGCTGGGATATTCTTGTTTAACACTAGTAGCAGGGTTT 5397
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5398 TCCATTTACTTTTTATTGTCTCTTGTGATTTGAGAAAAATGAGTATATGCTCTTGTTGATAAATGAACTTGCAT 5471
Query 187 -------------------------------------------------------------------------- 186
Sbjct 5472 GTCTTATTGTGAAGGGGAATGGGATGGTAACAAGTTAACAAAACACCTTTGTCCACAAGCTTCTATAGTTGATA 5545
Query 187 --------- 186
Sbjct 5546 TTCCCTAAA 5554
