Nucleotide Global Alignment

Description

Query:
ccsbBroad304_15487
Subject:
XR_002956669.1
Aligned Length:
5559
Identities:
163
Gaps:
5378

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AACTCTTGGCCTCAAGTGATTCTCCAGCCTTGGCCTCCTAAGGTACTAGGAGGCATGAGCCACCACAACTGGCC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AATAGAGATCTTTTTGTTCTCCAATTTTGCCATGCTAATTAATAGAGATACTAGGTGTGGTGGACTAAATGGTG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  ACCAAAAAGACATGGCCTAATCCCCAGAACCCATTACTATTCCCATATATAGTAACAGACTGAATATTACCTTA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TAGGGCAAAATATGTAGTTAAGAATTTTAAGGGCCAGCATGGTGGCTCATGCCTGTAATCCCAGCATTTTGGGA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GGTAGAGGTGGGTGAATCACCTGAGGTCAGGAGTTCAAGCCCAGCCTGGCCAACATGGCGAAACCCCATCTCTA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CTAAATATACAAAAATTAGCCAGGTGTGGTGGCCTGCACCTGTAATCCCAGCTACTCAGGAGGCTGAGGTAGCT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  TGAACCCAGGAGGCAGAGGTTGCAGTGAGCCAAAATTGTGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGAC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  TCCATCTCAAAAAAAAAAAATTGAGAGGAGTGTTATCCTAGATTTTCCAGGTGAGCTCTAAATCCAGTAACAAG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  TGTCTGTACAAGAATGAGGCAAAGAAAGATAACACAGATAGGAGGAAGCAATGCCACCATGACGACACAGACTG  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GAATGACACCGTTAACAGCTGAGGATGCCAAGAACCACCAGAAACTGGACGAGGCAAAAACAGATTCTCCTCTA  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  GAGCCTCTAGAGAGAGTATAGCCCTGCTGACACCTTGATTTTCTTCTGACCTCCAGCACTGTGAAAGAATAAAC  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  TTCTGTTGTTTAAGCCACCCAGTTTACAGTAATTTGTTGTAGCAGTCATATTTTAAGAAGAAAACTGGGGGAAT  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  AAATTTGGTGTAAGGAAATGTTATAGGAAATCTAGGTCCACCTGCCTGGTTATGGTGACAAAGGGTGAATACTT  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  TCCTAAGTTAGCAACATCAGAAACATCTTTAAAGTCTTTTTCTACATGAATTTCCTTATTGGTTGCAGTGATTT  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  TAAAATATGTCCACAAATTATTTAATTATACCCCCTCCAAAAGTTGGAGCCTAATTCTCCTCCCTTTGAGTATG  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  GATTATATTTATTGGCTTACTTCTAACAATACAATGTGGCAGAAGTGACCGTTTGTGACTTCCAAAATTAGGAC  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  ATAAAAGACTTTGTGGCTTTCTCCTTGTTCTTTGACTTAGATTATTCGCTCTGGGAGAAGCCAGCTGTTGTGTC  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  ATAAGGATACTCAAGCTGCACTATGCAATGTCCACATGGCAAAAACTCAGTCCTCTTGCCAACAGGAAACCCAA  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  GAACTTGGGCTATCTGAGCACAGTCAGCCTTAAAATGACTGTAGTTCGGGGCCGGCCTTCAAGCGTCAGCAACG  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  CAAGACGGCAGCCACCATGGGCTCGGGAGTAAAAGTCCCTCACAATTTCTGACTGTTGGAAGAACTCAGAGAAG  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  GCCAGAAAGGAGTAGGAGATGGCACAGTTAGCTGAGGTCTAGAAGATGATGAAGACATGACAAAAGATGGACAG  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  GGATGATAATTGGGCCTCCAAGAACAATTTATGAAAACCAAATATACAGCCTTAAAATAGAATGTGGACCTAAA  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  TACCCACTAGCACCCCCCTTTGTAAGATTTGTAACAAAAATTAATGTAAATGGAGTTAATAGTTCTAATGGAGT  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  AGTGGACCCAAGAGCCATATCAGTGCTAGCAAAATGGCAGAATTCATATAGCATCAAAGTTGTCCTGCAAGAGC  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  TTCAGTGCCTATTGATGTCTAAAGAAAATATGAAACTCCCTCAGCCACCGGCAGGACAGTGTTACAGCAATTAA  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  TCAAAAAGAAAAACCACAGGCCCTTCCGCTTCCCCCCGCCCGATTCGATTTAAGCAGTCTTCGTTTTCCACAGT  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  AGTAAATTTTCTAGATACATCATGTAGACCTCAAAGTACTGGAAAGGAAGCTCCAATTCAAAGGAAATTTATCT  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  TAAGATACTGTAAATGATACTAATTATCCATTTGAAATATATAAGTTTTGCTATAACAAATCATCCTATCAAGT  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  GTAACCACTGTCCACGTAGTTGAACTTCTGGAATCGAGAAATTCTAATTAAATTGATTCCCATCATAACTAGTG  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  GGGCATATCTAACTCAACTGTGAAAAGAAACATCACACAATCACCTTGCTGATTACATGGCCTGGGGGTCTCTG  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  CCTTCTCCCCTTACCCTCCTGCCTCCCACCCTCCCTGCAACAGCCCTCTAGCTTGGCTTGTTAGAGTGGATGTG  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  AAGGTTTCAGGTTGCAGCCTGTGGGACTACTGCTAGGTGTGTGGGGTGCTTCACCTGCACCCCTGGTTTCTTTA  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  AGTCTTATGCACCTTCCAATCCGTCATCCTGTCCCCACACTCCTCCACTCCTGCCTTTGGCAGAAGCATAGGTT  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  GTAACCCCTCCGCTCCCCTCTAAGATTGGCCTTTGGTAAGGAATTCAGGGCTTTCCCAGTATCTTCTCTCCCCC  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  ACCTTTATCGAGGGATGCTGTTTTTTCTTCCCTCCTCAAGTTGCTTTCTGCACCATCACCACTCAATACCTTCC  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  ATGACACTTCCTTGCTTTGGGCAGAAGCCATCAGGTAAGGTTAGAAAGTCTCTAACCTCCCTTGTTTAGTTTTG  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  GAACCATACTTATTCATTCTCCATCAGCCTGGGAAATGAATATTGGGTTTTCAGCCCTGCCACCCTCTGCTGTC  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  GTCAGCTGATGCGTTGTTTTTAGCTCAGGTTTTGATAAGGTGAAAAGGAAAGTCACCAGGGTTACTCAGACCTG  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  CCAGCTCTCGGAGTCCTTGGTGGTTGAAATTGGAGAAAGACCACAAGAAGACACTTGTAAGCACACGTGATCCC  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  TCTGAATTGTTTTACTTCCTGTAATTGCTTTTGCTTTTAAAAACTGAAGAAGTTTTAAACAGGGCTTTCATTTG  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  GTCATCCTTGCAATCCATTGAGGTCTAGTTTGGAATCTGACAACTGGAACAAAAAGAACCTTGAATCCAGTGCG  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  TGCCTTGGTTTTGGTGCTGCTGCTGCTTCTCAAGATCCTCAGCAGGGATTAAGAAAGAACCCAGTGTGCATAGC  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  AGATCCCTGAAATTGGCGGGCTTGACCTCCTGGGAAATTGGTGCGTCTTTCCACTTTCTGTTCAGGACCATTAA  3182

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3183  ATGCTGAAATGTGGATGCATACCGAAATAAAAGTAATTCATTGTGTAAAAAAATAAAATAACTCTAGTTCAGGA  3256

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3257  TGACATCTTGACTGCAACCTCATGAGAGACCCTGAGCCAGAACCCCCTAGGTAAGCTGCTCTTAAATTCCTGAA  3330

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3331  CCACAGCAGAAATTATGAGATAATATTTAGTGCTTTAATCTACCAGATTTTGAGGTAATTCCCCCCCTTTTTTT  3404

Query    1  ----------------------------------------------------ATGCAGTGGCGCCATCTCAGCT  22
                                                                |||||.|||||..|||||||||
Sbjct 3405  TTTTTTTTTTTTTTTTTTGAGATGGAGTTTTGTTCTTCTCACCCAGGCTGGAATGCAATGGCGTGATCTCAGCT  3478

Query   23  CACTGCAACCTCCATCTCCCAGGTTCAAGCGATTCTCGTGCCTCGGCCTCCTGAGTAGCTGGGATTACAGG--C  94
            ||||||||||||...|||||.|||||||||.||||||.||||||.||||||||||||||||||||||||||  |
Sbjct 3479  CACTGCAACCTCTGCCTCCCGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTCC  3552

Query   95  GTGTGCCACTAC---ACTCAACTAATTTTTGTATTTTTAGGAGAGACGGGGTTTCACCCTGTTGGCCAGGCTGG  165
                 ||||.||   .||||.|||||||||.|||||||||.|||||||||||||||||.|||||||||||||||
Sbjct 3553  -----CCACCACCATGCTCAGCTAATTTTTATATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGG  3621

Query  166  TCTCGAACTCCTGACCTCAAG-----------------------------------------------------  186
            ||||||||||||||.||||.|                                                     
Sbjct 3622  TCTCGAACTCCTGAGCTCAGGTAATCCATCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACC  3695

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3696  GCACCTGTCCTTGAGGTAATTCTTAACACAAATAACTAATACACTGATGCACCTTCTAAATAAAGTGCCATTTT  3769

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3770  TGTTCAGGAGGCCTTAGCATAACAAATATCACAATCCTATGAATCTCTAGAAGTTGTCATGTACTAGATGATTA  3843

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3844  CTGACATCAACACAAGTTATAATACCTTAAGAATGATACCATTCATTCAGTACTTCATATGTATATGAATTTTA  3917

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3918  CCAGCACAGAAACTTAGCCTAGGAATCTGTCTAGTTCTCCTATTATTAACATCATACATGAGTATGGTACATTT  3991

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3992  GTAATGATCAATGAGCAAATATCAATCCATTATTACTAACTAAATTCATACTTTATTCAAATTTCCTTACTTTC  4065

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4066  TCTTTATTCTCTAAAGTTCTGTGAATCCATGGTCCTATATCTGCACTAATTCACTTGTGTTTTTTCTATATACT  4139

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4140  TCTGCATCTAAAATACTATTTTTACTAGATTTTTTACCAGACTAATTTCATTGAATGTCTTCCAAAGTATGAAC  4213

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4214  ACTTTTATTTTAAAGTTTTCTTAATATCCTCATGGTAACATCAAAATTTAAGGAAATCTGCTTGTCATCAAAAA  4287

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4288  GGGTTTTGGTAATGCTTTGTTAGATTTGCAAACTTTTCATATTATTTGCTCTTACATCACTTCCATGCTATTTC  4361

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4362  CTTTGCTTTTAGTGTATTAATTTTGTTCAAAATGGTAAAATAAAAGAAATATTTATACATTATATTTTTAAGTA  4435

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4436  TCTATTTCCTTAATCTAAGGTAAACTTTTCTCAAGGCATTTTAACTTAACAGGATATTACATAGAAAAAAATAG  4509

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4510  GGGAATAATATCTGACACACTTCAAATGTTCTTTGAACTTTGTTAGTTTAGTGTCAGTTATTGACTGCTTGAAT  4583

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4584  TGGAGAACCCCCTGCTCATATCAGTAACAGCTAGTCAAAATTATCAAGAACATTAAGAACACATCACAGAAATC  4657

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4658  ACTGTCATCAGTTATAGATAGAAAGGAAGATTGCACAGTGAGATGATGTATTCAATAGAAGGTTGTGTGTAGTA  4731

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4732  AAAATAAGAATTGTAAATGTAAGTCAACAGTAAATCCAAAAGCCATGTCTTTCCAGGGAAATCTAAAAACTATG  4805

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4806  TTTCCTACTTTCAAAATCCTTTCATCATTACAAGAGTTATTCTTTTCTGGTTCAAAAATCTTGCCTACCTCCTT  4879

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4880  TTAAAAGTTATTCTTTAAAACATTAGGCCAGATGAGCTAATTTCAGACAGCTTATTTACCTGCTCATGGATTTA  4953

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4954  TATGCCACCTGCTTTTGCTTTTTCTACAGATGCAAAGTCAACCTCTGGGGCAAAATTCCACCTTTCTCTTTCTG  5027

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 5028  CCACACAAGTGGTAAATAACATGACCCAATAAATTTTAGCATTTCCCCAAATGTGTAGGATACAAAAAATGTAT  5101

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 5102  TCATTCATGTGAGATATAAAAATGTACACTCACACTTCTGAAATCAACAGCCAGCCATTTCACACTTGGGCCAA  5175

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 5176  AGGCAAACAAACATAATTCTCACTGGCAGCTGGACAACATTCCGAGCTGCCACCACATTAATTAACTCACCTCA  5249

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 5250  ATCAGATTCCACTTCAACTTGCACAGCTTGCTGCCAAGAAGCCTAGCAATAAATTGTTAGGTTAAATACTGAAC  5323

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 5324  AAGGTAGGGAAATACCATATGGTATGTTGTTATAGAGGCTGGGATATTCTTGTTTAACACTAGTAGCAGGGTTT  5397

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 5398  TCCATTTACTTTTTATTGTCTCTTGTGATTTGAGAAAAATGAGTATATGCTCTTGTTGATAAATGAACTTGCAT  5471

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 5472  GTCTTATTGTGAAGGGGAATGGGATGGTAACAAGTTAACAAAACACCTTTGTCCACAAGCTTCTATAGTTGATA  5545

Query  187  ---------  186
                     
Sbjct 5546  TTCCCTAAA  5554

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